co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G55260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
2	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
3	GO:0006741: NADP biosynthetic process	1.48E-04
4	GO:0009686: gibberellin biosynthetic process	2.42E-04
5	GO:0048575: short-day photoperiodism, flowering	2.51E-04
6	GO:0019674: NAD metabolic process	2.51E-04
7	GO:0090506: axillary shoot meristem initiation	2.51E-04
8	GO:0019363: pyridine nucleotide biosynthetic process	3.65E-04
9	GO:0009755: hormone-mediated signaling pathway	4.88E-04
10	GO:0009739: response to gibberellin	5.34E-04
11	GO:0010438: cellular response to sulfur starvation	6.19E-04
12	GO:0045487: gibberellin catabolic process	6.19E-04
13	GO:0006655: phosphatidylglycerol biosynthetic process	7.57E-04
14	GO:0031930: mitochondria-nucleus signaling pathway	9.01E-04
15	GO:0080186: developmental vegetative growth	1.05E-03
16	GO:0006402: mRNA catabolic process	1.21E-03
17	GO:0010439: regulation of glucosinolate biosynthetic process	1.21E-03
18	GO:0009704: de-etiolation	1.21E-03
19	GO:2000070: regulation of response to water deprivation	1.21E-03
20	GO:0009819: drought recovery	1.21E-03
21	GO:0042255: ribosome assembly	1.21E-03
22	GO:0006353: DNA-templated transcription, termination	1.21E-03
23	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.92E-03
24	GO:0010629: negative regulation of gene expression	1.92E-03
25	GO:0009733: response to auxin	2.03E-03
26	GO:0009682: induced systemic resistance	2.12E-03
27	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.32E-03
28	GO:0016024: CDP-diacylglycerol biosynthetic process	2.32E-03
29	GO:2000028: regulation of photoperiodism, flowering	2.52E-03
30	GO:0010102: lateral root morphogenesis	2.52E-03
31	GO:0010223: secondary shoot formation	2.74E-03
32	GO:0009887: animal organ morphogenesis	2.74E-03
33	GO:0006302: double-strand break repair	2.74E-03
34	GO:0051321: meiotic cell cycle	3.89E-03
35	GO:0016114: terpenoid biosynthetic process	3.89E-03
36	GO:0001944: vasculature development	4.40E-03
37	GO:0009625: response to insect	4.40E-03
38	GO:0071215: cellular response to abscisic acid stimulus	4.40E-03
39	GO:0010182: sugar mediated signaling pathway	5.46E-03
40	GO:0008654: phospholipid biosynthetic process	6.03E-03
41	GO:0071554: cell wall organization or biogenesis	6.32E-03
42	GO:0019761: glucosinolate biosynthetic process	6.61E-03
43	GO:0009723: response to ethylene	7.01E-03
44	GO:0009567: double fertilization forming a zygote and endosperm	7.21E-03
45	GO:0048573: photoperiodism, flowering	9.14E-03
46	GO:0009651: response to salt stress	1.07E-02
47	GO:0048527: lateral root development	1.09E-02
48	GO:0009751: response to salicylic acid	1.10E-02
49	GO:0006865: amino acid transport	1.12E-02
50	GO:0009867: jasmonic acid mediated signaling pathway	1.16E-02
51	GO:0009753: response to jasmonic acid	1.19E-02
52	GO:0042546: cell wall biogenesis	1.43E-02
53	GO:0009644: response to high light intensity	1.47E-02
54	GO:0009734: auxin-activated signaling pathway	1.57E-02
55	GO:0009908: flower development	1.79E-02
56	GO:0048367: shoot system development	1.97E-02
57	GO:0009740: gibberellic acid mediated signaling pathway	2.11E-02
58	GO:0051301: cell division	2.16E-02
59	GO:0051726: regulation of cell cycle	2.29E-02
60	GO:0010228: vegetative to reproductive phase transition of meristem	3.36E-02
61	GO:0006470: protein dephosphorylation	3.57E-02
62	GO:0008380: RNA splicing	3.68E-02
63	GO:0009617: response to bacterium	3.68E-02
64	GO:0009826: unidimensional cell growth	4.31E-02
65	GO:0009658: chloroplast organization	4.43E-02
66	GO:0007049: cell cycle	4.79E-02
67	GO:0048366: leaf development	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0042736: NADH kinase activity	6.10E-05
2	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.48E-04
3	GO:0045544: gibberellin 20-oxidase activity	3.65E-04
4	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	3.65E-04
5	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	6.19E-04
6	GO:0004523: RNA-DNA hybrid ribonuclease activity	6.19E-04
7	GO:0004605: phosphatidate cytidylyltransferase activity	7.57E-04
8	GO:0004709: MAP kinase kinase kinase activity	7.57E-04
9	GO:0003951: NAD+ kinase activity	1.38E-03
10	GO:0033612: receptor serine/threonine kinase binding	3.89E-03
11	GO:0008408: 3'-5' exonuclease activity	3.89E-03
12	GO:0010333: terpene synthase activity	3.89E-03
13	GO:0003727: single-stranded RNA binding	4.65E-03
14	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	5.46E-03
15	GO:0004518: nuclease activity	6.61E-03
16	GO:0016759: cellulose synthase activity	7.21E-03
17	GO:0016413: O-acetyltransferase activity	7.84E-03
18	GO:0051213: dioxygenase activity	8.16E-03
19	GO:0004722: protein serine/threonine phosphatase activity	9.88E-03
20	GO:0030145: manganese ion binding	1.09E-02
21	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.16E-02
22	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.23E-02
23	GO:0003690: double-stranded DNA binding	1.76E-02
24	GO:0016298: lipase activity	1.76E-02
25	GO:0015171: amino acid transmembrane transporter activity	1.84E-02
26	GO:0015035: protein disulfide oxidoreductase activity	2.25E-02
27	GO:0008026: ATP-dependent helicase activity	2.29E-02
28	GO:0019843: rRNA binding	2.58E-02
29	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.63E-02
30	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.83E-02
31	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.84E-02
32	GO:0044212: transcription regulatory region DNA binding	4.00E-02
33	GO:0008168: methyltransferase activity	4.31E-02
34	GO:0000287: magnesium ion binding	4.37E-02
35	GO:0016788: hydrolase activity, acting on ester bonds	4.49E-02
36	GO:0043531: ADP binding	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0000791: euchromatin	6.10E-05
2	GO:0030870: Mre11 complex	1.48E-04
3	GO:0000795: synaptonemal complex	6.19E-04
4	GO:0005875: microtubule associated complex	3.18E-03
5	GO:0009504: cell plate	6.03E-03
6	GO:0000785: chromatin	6.61E-03
7	GO:0030529: intracellular ribonucleoprotein complex	8.16E-03
8	GO:0010008: endosome membrane	1.97E-02
9	GO:0005615: extracellular space	3.52E-02