co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G55220

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
2	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
3	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0015995: chlorophyll biosynthetic process	3.17E-09
6	GO:0006412: translation	5.09E-07
7	GO:0032544: plastid translation	1.34E-06
8	GO:0042254: ribosome biogenesis	3.92E-06
9	GO:0009735: response to cytokinin	7.76E-06
10	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.28E-05
11	GO:1901259: chloroplast rRNA processing	4.63E-05
12	GO:0019252: starch biosynthetic process	6.22E-05
13	GO:0000476: maturation of 4.5S rRNA	1.25E-04
14	GO:0000967: rRNA 5'-end processing	1.25E-04
15	GO:0006783: heme biosynthetic process	1.25E-04
16	GO:0034337: RNA folding	1.25E-04
17	GO:0006782: protoporphyrinogen IX biosynthetic process	1.79E-04
18	GO:0006633: fatty acid biosynthetic process	1.82E-04
19	GO:0019388: galactose catabolic process	2.90E-04
20	GO:0010270: photosystem II oxygen evolving complex assembly	2.90E-04
21	GO:0034470: ncRNA processing	2.90E-04
22	GO:0010207: photosystem II assembly	3.14E-04
23	GO:0006418: tRNA aminoacylation for protein translation	4.81E-04
24	GO:0006165: nucleoside diphosphate phosphorylation	6.85E-04
25	GO:0006228: UTP biosynthetic process	6.85E-04
26	GO:0010731: protein glutathionylation	6.85E-04
27	GO:0009590: detection of gravity	6.85E-04
28	GO:0006020: inositol metabolic process	6.85E-04
29	GO:0071484: cellular response to light intensity	6.85E-04
30	GO:0051085: chaperone mediated protein folding requiring cofactor	6.85E-04
31	GO:0006241: CTP biosynthetic process	6.85E-04
32	GO:0015979: photosynthesis	7.35E-04
33	GO:0006021: inositol biosynthetic process	9.08E-04
34	GO:0019464: glycine decarboxylation via glycine cleavage system	9.08E-04
35	GO:0006183: GTP biosynthetic process	9.08E-04
36	GO:0006828: manganese ion transport	1.41E-03
37	GO:0046855: inositol phosphate dephosphorylation	1.41E-03
38	GO:0010190: cytochrome b6f complex assembly	1.41E-03
39	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.41E-03
40	GO:0006014: D-ribose metabolic process	1.41E-03
41	GO:0000470: maturation of LSU-rRNA	1.41E-03
42	GO:0042026: protein refolding	1.68E-03
43	GO:0009955: adaxial/abaxial pattern specification	1.68E-03
44	GO:0009817: defense response to fungus, incompatible interaction	1.93E-03
45	GO:0006353: DNA-templated transcription, termination	2.29E-03
46	GO:0005978: glycogen biosynthetic process	2.29E-03
47	GO:0009658: chloroplast organization	2.67E-03
48	GO:0010206: photosystem II repair	2.95E-03
49	GO:0009409: response to cold	3.13E-03
50	GO:0006415: translational termination	4.06E-03
51	GO:0006816: calcium ion transport	4.06E-03
52	GO:0005983: starch catabolic process	4.45E-03
53	GO:0006790: sulfur compound metabolic process	4.45E-03
54	GO:0006006: glucose metabolic process	4.86E-03
55	GO:0046854: phosphatidylinositol phosphorylation	5.71E-03
56	GO:0000027: ribosomal large subunit assembly	6.61E-03
57	GO:0051017: actin filament bundle assembly	6.61E-03
58	GO:0009768: photosynthesis, light harvesting in photosystem I	7.08E-03
59	GO:0016114: terpenoid biosynthetic process	7.56E-03
60	GO:0061077: chaperone-mediated protein folding	7.56E-03
61	GO:0016226: iron-sulfur cluster assembly	8.05E-03
62	GO:0007005: mitochondrion organization	8.05E-03
63	GO:0009411: response to UV	8.56E-03
64	GO:0006012: galactose metabolic process	8.56E-03
65	GO:0016117: carotenoid biosynthetic process	9.60E-03
66	GO:0010027: thylakoid membrane organization	1.61E-02
67	GO:0006457: protein folding	1.65E-02
68	GO:0009627: systemic acquired resistance	1.74E-02
69	GO:0048481: plant ovule development	1.94E-02
70	GO:0008219: cell death	1.94E-02
71	GO:0000160: phosphorelay signal transduction system	2.01E-02
72	GO:0009813: flavonoid biosynthetic process	2.01E-02
73	GO:0016051: carbohydrate biosynthetic process	2.30E-02
74	GO:0009853: photorespiration	2.30E-02
75	GO:0006839: mitochondrial transport	2.52E-02
76	GO:0006631: fatty acid metabolic process	2.60E-02
77	GO:0042542: response to hydrogen peroxide	2.68E-02
78	GO:0032259: methylation	2.81E-02
79	GO:0006629: lipid metabolic process	2.93E-02
80	GO:0008152: metabolic process	3.23E-02
81	GO:0042538: hyperosmotic salinity response	3.24E-02
82	GO:0055114: oxidation-reduction process	3.34E-02
83	GO:0006364: rRNA processing	3.40E-02
84	GO:0009585: red, far-red light phototransduction	3.40E-02
85	GO:0009736: cytokinin-activated signaling pathway	3.40E-02
86	GO:0006096: glycolytic process	3.83E-02
87	GO:0006396: RNA processing	4.47E-02
88	GO:0005975: carbohydrate metabolic process	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0051060: pullulanase activity	0.00E+00
5	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
6	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
7	GO:0046408: chlorophyll synthetase activity	0.00E+00
8	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
9	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
10	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
11	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
12	GO:0090711: FMN hydrolase activity	0.00E+00
13	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
14	GO:0010303: limit dextrinase activity	0.00E+00
15	GO:0019843: rRNA binding	1.97E-13
16	GO:0003735: structural constituent of ribosome	2.30E-08
17	GO:0005528: FK506 binding	2.56E-07
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.17E-05
19	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.25E-04
20	GO:0008934: inositol monophosphate 1-phosphatase activity	2.90E-04
21	GO:0052833: inositol monophosphate 4-phosphatase activity	2.90E-04
22	GO:0008967: phosphoglycolate phosphatase activity	2.90E-04
23	GO:0016630: protochlorophyllide reductase activity	2.90E-04
24	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	2.90E-04
25	GO:0004614: phosphoglucomutase activity	2.90E-04
26	GO:0052832: inositol monophosphate 3-phosphatase activity	2.90E-04
27	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.90E-04
28	GO:0002161: aminoacyl-tRNA editing activity	4.78E-04
29	GO:0005504: fatty acid binding	4.78E-04
30	GO:0045174: glutathione dehydrogenase (ascorbate) activity	4.78E-04
31	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	4.78E-04
32	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	4.78E-04
33	GO:0016851: magnesium chelatase activity	6.85E-04
34	GO:0016149: translation release factor activity, codon specific	6.85E-04
35	GO:0004550: nucleoside diphosphate kinase activity	6.85E-04
36	GO:0043023: ribosomal large subunit binding	6.85E-04
37	GO:0008097: 5S rRNA binding	6.85E-04
38	GO:0004375: glycine dehydrogenase (decarboxylating) activity	6.85E-04
39	GO:0019201: nucleotide kinase activity	6.85E-04
40	GO:0004812: aminoacyl-tRNA ligase activity	7.35E-04
41	GO:0045430: chalcone isomerase activity	9.08E-04
42	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	9.08E-04
43	GO:0003959: NADPH dehydrogenase activity	1.15E-03
44	GO:0004556: alpha-amylase activity	1.41E-03
45	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.68E-03
46	GO:0004747: ribokinase activity	1.68E-03
47	GO:0004017: adenylate kinase activity	1.68E-03
48	GO:0051920: peroxiredoxin activity	1.68E-03
49	GO:0004033: aldo-keto reductase (NADP) activity	2.29E-03
50	GO:0008865: fructokinase activity	2.29E-03
51	GO:0004525: ribonuclease III activity	2.29E-03
52	GO:0016209: antioxidant activity	2.29E-03
53	GO:0004034: aldose 1-epimerase activity	2.29E-03
54	GO:0003747: translation release factor activity	2.95E-03
55	GO:0016491: oxidoreductase activity	2.98E-03
56	GO:0005384: manganese ion transmembrane transporter activity	3.31E-03
57	GO:0047617: acyl-CoA hydrolase activity	3.31E-03
58	GO:0044183: protein binding involved in protein folding	4.06E-03
59	GO:0047372: acylglycerol lipase activity	4.06E-03
60	GO:0000049: tRNA binding	4.45E-03
61	GO:0015095: magnesium ion transmembrane transporter activity	4.86E-03
62	GO:0031072: heat shock protein binding	4.86E-03
63	GO:0008266: poly(U) RNA binding	5.28E-03
64	GO:0051082: unfolded protein binding	5.96E-03
65	GO:0031409: pigment binding	6.15E-03
66	GO:0051536: iron-sulfur cluster binding	6.61E-03
67	GO:0003723: RNA binding	9.02E-03
68	GO:0005102: receptor binding	9.60E-03
69	GO:0016853: isomerase activity	1.12E-02
70	GO:0000156: phosphorelay response regulator activity	1.36E-02
71	GO:0051015: actin filament binding	1.36E-02
72	GO:0008237: metallopeptidase activity	1.48E-02
73	GO:0008168: methyltransferase activity	1.54E-02
74	GO:0016168: chlorophyll binding	1.67E-02
75	GO:0005507: copper ion binding	1.87E-02
76	GO:0004222: metalloendopeptidase activity	2.08E-02
77	GO:0004364: glutathione transferase activity	2.68E-02
78	GO:0043621: protein self-association	2.91E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009571: proplastid stroma	0.00E+00
3	GO:0009507: chloroplast	4.16E-52
4	GO:0009570: chloroplast stroma	2.88E-37
5	GO:0009941: chloroplast envelope	3.33E-24
6	GO:0009535: chloroplast thylakoid membrane	5.46E-20
7	GO:0009579: thylakoid	7.82E-20
8	GO:0009534: chloroplast thylakoid	1.22E-12
9	GO:0009543: chloroplast thylakoid lumen	3.59E-10
10	GO:0005840: ribosome	9.40E-09
11	GO:0031977: thylakoid lumen	1.72E-08
12	GO:0031969: chloroplast membrane	6.93E-06
13	GO:0010319: stromule	1.01E-04
14	GO:0009547: plastid ribosome	1.25E-04
15	GO:0010007: magnesium chelatase complex	4.78E-04
16	GO:0005960: glycine cleavage complex	6.85E-04
17	GO:0048046: apoplast	1.72E-03
18	GO:0022626: cytosolic ribosome	2.40E-03
19	GO:0009536: plastid	2.63E-03
20	GO:0005763: mitochondrial small ribosomal subunit	2.95E-03
21	GO:0022625: cytosolic large ribosomal subunit	3.74E-03
22	GO:0000311: plastid large ribosomal subunit	4.45E-03
23	GO:0032040: small-subunit processome	4.45E-03
24	GO:0030095: chloroplast photosystem II	5.28E-03
25	GO:0030076: light-harvesting complex	5.71E-03
26	GO:0009654: photosystem II oxygen evolving complex	7.08E-03
27	GO:0015935: small ribosomal subunit	7.56E-03
28	GO:0015629: actin cytoskeleton	8.56E-03
29	GO:0019898: extrinsic component of membrane	1.18E-02
30	GO:0009707: chloroplast outer membrane	1.94E-02
31	GO:0015934: large ribosomal subunit	2.15E-02
32	GO:0005856: cytoskeleton	2.99E-02
33	GO:0016020: membrane	3.13E-02
34	GO:0009706: chloroplast inner membrane	4.37E-02
35	GO:0010287: plastoglobule	4.94E-02