Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G54840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071327: cellular response to trehalose stimulus0.00E+00
2GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
3GO:1900367: positive regulation of defense response to insect0.00E+00
4GO:0002764: immune response-regulating signaling pathway0.00E+00
5GO:0032515: negative regulation of phosphoprotein phosphatase activity0.00E+00
6GO:0010150: leaf senescence2.87E-07
7GO:2000031: regulation of salicylic acid mediated signaling pathway1.85E-04
8GO:1901183: positive regulation of camalexin biosynthetic process1.86E-04
9GO:0048508: embryonic meristem development1.86E-04
10GO:0051938: L-glutamate import1.86E-04
11GO:0046256: 2,4,6-trinitrotoluene catabolic process1.86E-04
12GO:0019567: arabinose biosynthetic process1.86E-04
13GO:1900426: positive regulation of defense response to bacterium2.69E-04
14GO:0010115: regulation of abscisic acid biosynthetic process4.19E-04
15GO:0015865: purine nucleotide transport4.19E-04
16GO:0010271: regulation of chlorophyll catabolic process4.19E-04
17GO:0043091: L-arginine import4.19E-04
18GO:0006123: mitochondrial electron transport, cytochrome c to oxygen4.19E-04
19GO:0080151: positive regulation of salicylic acid mediated signaling pathway4.19E-04
20GO:0015802: basic amino acid transport4.19E-04
21GO:0010618: aerenchyma formation4.19E-04
22GO:0009945: radial axis specification4.19E-04
23GO:0009751: response to salicylic acid5.05E-04
24GO:1900055: regulation of leaf senescence6.84E-04
25GO:0034051: negative regulation of plant-type hypersensitive response6.84E-04
26GO:0016045: detection of bacterium6.84E-04
27GO:1900140: regulation of seedling development6.84E-04
28GO:0010359: regulation of anion channel activity6.84E-04
29GO:2000377: regulation of reactive oxygen species metabolic process7.41E-04
30GO:0031348: negative regulation of defense response9.73E-04
31GO:0071456: cellular response to hypoxia9.73E-04
32GO:0010306: rhamnogalacturonan II biosynthetic process9.77E-04
33GO:0046836: glycolipid transport9.77E-04
34GO:0046902: regulation of mitochondrial membrane permeability9.77E-04
35GO:0009399: nitrogen fixation9.77E-04
36GO:0072583: clathrin-dependent endocytosis9.77E-04
37GO:0009625: response to insect1.06E-03
38GO:0080142: regulation of salicylic acid biosynthetic process1.29E-03
39GO:0006542: glutamine biosynthetic process1.29E-03
40GO:0060548: negative regulation of cell death1.29E-03
41GO:0045227: capsule polysaccharide biosynthetic process1.29E-03
42GO:0033358: UDP-L-arabinose biosynthetic process1.29E-03
43GO:0010508: positive regulation of autophagy1.29E-03
44GO:0009697: salicylic acid biosynthetic process1.65E-03
45GO:0010225: response to UV-C1.65E-03
46GO:0006468: protein phosphorylation1.75E-03
47GO:0007264: small GTPase mediated signal transduction1.89E-03
48GO:0010337: regulation of salicylic acid metabolic process2.03E-03
49GO:0010942: positive regulation of cell death2.03E-03
50GO:0010405: arabinogalactan protein metabolic process2.03E-03
51GO:0018258: protein O-linked glycosylation via hydroxyproline2.03E-03
52GO:0009942: longitudinal axis specification2.43E-03
53GO:0010310: regulation of hydrogen peroxide metabolic process2.43E-03
54GO:0009423: chorismate biosynthetic process2.43E-03
55GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c2.87E-03
56GO:0071446: cellular response to salicylic acid stimulus2.87E-03
57GO:1900056: negative regulation of leaf senescence2.87E-03
58GO:0050829: defense response to Gram-negative bacterium2.87E-03
59GO:0006950: response to stress2.99E-03
60GO:0009819: drought recovery3.32E-03
61GO:0006499: N-terminal protein myristoylation3.64E-03
62GO:0006470: protein dephosphorylation3.66E-03
63GO:0010204: defense response signaling pathway, resistance gene-independent3.80E-03
64GO:0010099: regulation of photomorphogenesis3.80E-03
65GO:0007568: aging3.82E-03
66GO:0090333: regulation of stomatal closure4.30E-03
67GO:0048268: clathrin coat assembly4.82E-03
68GO:0048354: mucilage biosynthetic process involved in seed coat development4.82E-03
69GO:0010380: regulation of chlorophyll biosynthetic process4.82E-03
70GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway4.82E-03
71GO:0007064: mitotic sister chromatid cohesion5.36E-03
72GO:0007165: signal transduction5.61E-03
73GO:0009073: aromatic amino acid family biosynthetic process5.92E-03
74GO:0015770: sucrose transport5.92E-03
75GO:0006855: drug transmembrane transport6.28E-03
76GO:0010105: negative regulation of ethylene-activated signaling pathway6.51E-03
77GO:0008361: regulation of cell size6.51E-03
78GO:0012501: programmed cell death6.51E-03
79GO:0002213: defense response to insect6.51E-03
80GO:0006829: zinc II ion transport7.11E-03
81GO:0010200: response to chitin7.39E-03
82GO:0007034: vacuolar transport7.73E-03
83GO:0010540: basipetal auxin transport7.73E-03
84GO:0046688: response to copper ion8.37E-03
85GO:0009225: nucleotide-sugar metabolic process8.37E-03
86GO:0010167: response to nitrate8.37E-03
87GO:0005985: sucrose metabolic process8.37E-03
88GO:0009626: plant-type hypersensitive response9.15E-03
89GO:0009620: response to fungus9.44E-03
90GO:0009624: response to nematode1.03E-02
91GO:0006825: copper ion transport1.04E-02
92GO:0009742: brassinosteroid mediated signaling pathway1.10E-02
93GO:0003333: amino acid transmembrane transport1.11E-02
94GO:0009269: response to desiccation1.11E-02
95GO:0016226: iron-sulfur cluster assembly1.19E-02
96GO:2000022: regulation of jasmonic acid mediated signaling pathway1.19E-02
97GO:0010017: red or far-red light signaling pathway1.19E-02
98GO:0006012: galactose metabolic process1.26E-02
99GO:0006952: defense response1.44E-02
100GO:0000271: polysaccharide biosynthetic process1.50E-02
101GO:0042391: regulation of membrane potential1.50E-02
102GO:0045489: pectin biosynthetic process1.58E-02
103GO:0009749: response to glucose1.75E-02
104GO:0016032: viral process1.92E-02
105GO:0009630: gravitropism1.92E-02
106GO:0009617: response to bacterium2.14E-02
107GO:0010468: regulation of gene expression2.14E-02
108GO:0006904: vesicle docking involved in exocytosis2.19E-02
109GO:0001666: response to hypoxia2.38E-02
110GO:0009816: defense response to bacterium, incompatible interaction2.48E-02
111GO:0035556: intracellular signal transduction2.57E-02
112GO:0009627: systemic acquired resistance2.58E-02
113GO:0042128: nitrate assimilation2.58E-02
114GO:0008219: cell death2.88E-02
115GO:0009832: plant-type cell wall biogenesis2.98E-02
116GO:0009407: toxin catabolic process3.08E-02
117GO:0048527: lateral root development3.19E-02
118GO:0010119: regulation of stomatal movement3.19E-02
119GO:0010043: response to zinc ion3.19E-02
120GO:0055085: transmembrane transport3.23E-02
121GO:0048366: leaf development3.27E-02
122GO:0009867: jasmonic acid mediated signaling pathway3.40E-02
123GO:0045087: innate immune response3.40E-02
124GO:0016051: carbohydrate biosynthetic process3.40E-02
125GO:0006887: exocytosis3.85E-02
126GO:0006897: endocytosis3.85E-02
127GO:0009744: response to sucrose4.08E-02
128GO:0051707: response to other organism4.08E-02
129GO:0009636: response to toxic substance4.43E-02
130GO:0031347: regulation of defense response4.67E-02
131GO:0006812: cation transport4.79E-02
132GO:0032259: methylation4.85E-02
RankGO TermAdjusted P value
1GO:0004865: protein serine/threonine phosphatase inhibitor activity0.00E+00
2GO:0004107: chorismate synthase activity0.00E+00
3GO:0019707: protein-cysteine S-acyltransferase activity1.86E-04
4GO:0032050: clathrin heavy chain binding1.86E-04
5GO:0001671: ATPase activator activity4.19E-04
6GO:0022821: potassium ion antiporter activity4.19E-04
7GO:0016531: copper chaperone activity6.84E-04
8GO:0043424: protein histidine kinase binding8.15E-04
9GO:0015189: L-lysine transmembrane transporter activity9.77E-04
10GO:0017089: glycolipid transporter activity9.77E-04
11GO:0015181: arginine transmembrane transporter activity9.77E-04
12GO:0016301: kinase activity1.13E-03
13GO:0050373: UDP-arabinose 4-epimerase activity1.29E-03
14GO:0051861: glycolipid binding1.29E-03
15GO:0005313: L-glutamate transmembrane transporter activity1.29E-03
16GO:0019199: transmembrane receptor protein kinase activity1.29E-03
17GO:0004674: protein serine/threonine kinase activity1.45E-03
18GO:0005471: ATP:ADP antiporter activity1.65E-03
19GO:0070696: transmembrane receptor protein serine/threonine kinase binding1.65E-03
20GO:0004356: glutamate-ammonia ligase activity1.65E-03
21GO:0035252: UDP-xylosyltransferase activity2.03E-03
22GO:1990714: hydroxyproline O-galactosyltransferase activity2.03E-03
23GO:0003978: UDP-glucose 4-epimerase activity2.43E-03
24GO:0043295: glutathione binding2.87E-03
25GO:0008506: sucrose:proton symporter activity2.87E-03
26GO:0004714: transmembrane receptor protein tyrosine kinase activity3.32E-03
27GO:0015238: drug transmembrane transporter activity3.47E-03
28GO:0015174: basic amino acid transmembrane transporter activity4.82E-03
29GO:0004568: chitinase activity5.36E-03
30GO:0008171: O-methyltransferase activity5.36E-03
31GO:0005545: 1-phosphatidylinositol binding5.36E-03
32GO:0008515: sucrose transmembrane transporter activity5.92E-03
33GO:0008559: xenobiotic-transporting ATPase activity5.92E-03
34GO:0008378: galactosyltransferase activity6.51E-03
35GO:0030552: cAMP binding8.37E-03
36GO:0030553: cGMP binding8.37E-03
37GO:0003954: NADH dehydrogenase activity9.71E-03
38GO:0004722: protein serine/threonine phosphatase activity1.00E-02
39GO:0005216: ion channel activity1.04E-02
40GO:0008324: cation transmembrane transporter activity1.04E-02
41GO:0051087: chaperone binding1.04E-02
42GO:0033612: receptor serine/threonine kinase binding1.11E-02
43GO:0019706: protein-cysteine S-palmitoyltransferase activity1.11E-02
44GO:0004707: MAP kinase activity1.11E-02
45GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.19E-02
46GO:0016758: transferase activity, transferring hexosyl groups1.26E-02
47GO:0005249: voltage-gated potassium channel activity1.50E-02
48GO:0030551: cyclic nucleotide binding1.50E-02
49GO:0046873: metal ion transmembrane transporter activity1.58E-02
50GO:0030276: clathrin binding1.58E-02
51GO:0010181: FMN binding1.66E-02
52GO:0015297: antiporter activity1.71E-02
53GO:0019901: protein kinase binding1.75E-02
54GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity2.19E-02
55GO:0008375: acetylglucosaminyltransferase activity2.58E-02
56GO:0004806: triglyceride lipase activity2.67E-02
57GO:0004842: ubiquitin-protein transferase activity2.80E-02
58GO:0043531: ADP binding3.05E-02
59GO:0000987: core promoter proximal region sequence-specific DNA binding3.51E-02
60GO:0005507: copper ion binding3.72E-02
61GO:0004364: glutathione transferase activity3.96E-02
62GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting4.12E-02
63GO:0051537: 2 iron, 2 sulfur cluster binding4.31E-02
64GO:0015293: symporter activity4.43E-02
65GO:0005198: structural molecule activity4.43E-02
66GO:0005525: GTP binding4.44E-02
67GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding4.57E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane8.85E-06
2GO:0005758: mitochondrial intermembrane space3.89E-05
3GO:0000138: Golgi trans cisterna1.86E-04
4GO:0005901: caveola4.19E-04
5GO:0031304: intrinsic component of mitochondrial inner membrane4.19E-04
6GO:0030139: endocytic vesicle6.84E-04
7GO:0070062: extracellular exosome9.77E-04
8GO:0000813: ESCRT I complex1.65E-03
9GO:0000164: protein phosphatase type 1 complex1.65E-03
10GO:0005794: Golgi apparatus3.28E-03
11GO:0030125: clathrin vesicle coat5.36E-03
12GO:0005740: mitochondrial envelope5.36E-03
13GO:0016021: integral component of membrane6.79E-03
14GO:0005769: early endosome9.03E-03
15GO:0070469: respiratory chain1.04E-02
16GO:0005905: clathrin-coated pit1.11E-02
17GO:0030136: clathrin-coated vesicle1.42E-02
18GO:0000145: exocyst1.92E-02
19GO:0032580: Golgi cisterna membrane2.10E-02
20GO:0000151: ubiquitin ligase complex2.88E-02
21GO:0000325: plant-type vacuole3.19E-02
22GO:0000786: nucleosome3.30E-02
23GO:0031902: late endosome membrane3.85E-02
24GO:0005774: vacuolar membrane4.06E-02
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Gene type



Gene DE type