co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046460: neutral lipid biosynthetic process	0.00E+00
2	GO:0000372: Group I intron splicing	0.00E+00
3	GO:0043972: histone H3-K23 acetylation	0.00E+00
4	GO:0044154: histone H3-K14 acetylation	0.00E+00
5	GO:0006508: proteolysis	1.05E-05
6	GO:0048657: anther wall tapetum cell differentiation	5.48E-05
7	GO:0006436: tryptophanyl-tRNA aminoacylation	5.48E-05
8	GO:0000066: mitochondrial ornithine transport	5.48E-05
9	GO:0051171: regulation of nitrogen compound metabolic process	5.48E-05
10	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	5.48E-05
11	GO:0043971: histone H3-K18 acetylation	5.48E-05
12	GO:0006435: threonyl-tRNA aminoacylation	1.34E-04
13	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	1.34E-04
14	GO:0045493: xylan catabolic process	2.28E-04
15	GO:0048868: pollen tube development	2.91E-04
16	GO:0010306: rhamnogalacturonan II biosynthetic process	3.33E-04
17	GO:0010255: glucose mediated signaling pathway	3.33E-04
18	GO:0015846: polyamine transport	4.45E-04
19	GO:0031365: N-terminal protein amino acid modification	5.66E-04
20	GO:0034389: lipid particle organization	8.25E-04
21	GO:0006353: DNA-templated transcription, termination	1.11E-03
22	GO:0044030: regulation of DNA methylation	1.26E-03
23	GO:0022900: electron transport chain	1.26E-03
24	GO:0009827: plant-type cell wall modification	1.26E-03
25	GO:0019432: triglyceride biosynthetic process	1.41E-03
26	GO:0009821: alkaloid biosynthetic process	1.41E-03
27	GO:0000373: Group II intron splicing	1.41E-03
28	GO:0010380: regulation of chlorophyll biosynthetic process	1.58E-03
29	GO:0010207: photosystem II assembly	2.49E-03
30	GO:0080188: RNA-directed DNA methylation	2.70E-03
31	GO:0006071: glycerol metabolic process	2.90E-03
32	GO:0010187: negative regulation of seed germination	3.11E-03
33	GO:0006289: nucleotide-excision repair	3.11E-03
34	GO:0010073: meristem maintenance	3.32E-03
35	GO:0006418: tRNA aminoacylation for protein translation	3.32E-03
36	GO:0015992: proton transport	3.54E-03
37	GO:0080092: regulation of pollen tube growth	3.77E-03
38	GO:0010584: pollen exine formation	4.23E-03
39	GO:0010268: brassinosteroid homeostasis	4.96E-03
40	GO:0045489: pectin biosynthetic process	4.96E-03
41	GO:0009860: pollen tube growth	5.68E-03
42	GO:0016132: brassinosteroid biosynthetic process	5.74E-03
43	GO:0007264: small GTPase mediated signal transduction	6.00E-03
44	GO:0016125: sterol metabolic process	6.55E-03
45	GO:0009911: positive regulation of flower development	7.40E-03
46	GO:0016126: sterol biosynthetic process	7.40E-03
47	GO:0010411: xyloglucan metabolic process	8.29E-03
48	GO:0048481: plant ovule development	8.91E-03
49	GO:0030244: cellulose biosynthetic process	8.91E-03
50	GO:0009834: plant-type secondary cell wall biogenesis	9.54E-03
51	GO:0009910: negative regulation of flower development	9.86E-03
52	GO:0006839: mitochondrial transport	1.15E-02
53	GO:0010224: response to UV-B	1.59E-02
54	GO:0009740: gibberellic acid mediated signaling pathway	1.91E-02
55	GO:0009553: embryo sac development	1.95E-02
56	GO:0009793: embryo development ending in seed dormancy	2.06E-02
57	GO:0009058: biosynthetic process	2.43E-02
58	GO:0009790: embryo development	2.61E-02
59	GO:0006633: fatty acid biosynthetic process	2.75E-02
60	GO:0040008: regulation of growth	2.85E-02
61	GO:0007623: circadian rhythm	2.94E-02
62	GO:0009451: RNA modification	2.99E-02
63	GO:0009739: response to gibberellin	3.19E-02
64	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.19E-02
65	GO:0007166: cell surface receptor signaling pathway	3.24E-02
66	GO:0010468: regulation of gene expression	3.34E-02
67	GO:0009826: unidimensional cell growth	3.91E-02
68	GO:0010200: response to chitin	4.79E-02
69	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
2	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
3	GO:0019808: polyamine binding	0.00E+00
4	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
5	GO:0004176: ATP-dependent peptidase activity	3.47E-06
6	GO:0004830: tryptophan-tRNA ligase activity	5.48E-05
7	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	5.48E-05
8	GO:0005290: L-histidine transmembrane transporter activity	5.48E-05
9	GO:0004829: threonine-tRNA ligase activity	1.34E-04
10	GO:0000064: L-ornithine transmembrane transporter activity	1.34E-04
11	GO:0032549: ribonucleoside binding	2.28E-04
12	GO:0016805: dipeptidase activity	2.28E-04
13	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	2.28E-04
14	GO:0015181: arginine transmembrane transporter activity	3.33E-04
15	GO:0009678: hydrogen-translocating pyrophosphatase activity	3.33E-04
16	GO:0015189: L-lysine transmembrane transporter activity	3.33E-04
17	GO:0000254: C-4 methylsterol oxidase activity	3.33E-04
18	GO:0070628: proteasome binding	4.45E-04
19	GO:0009044: xylan 1,4-beta-xylosidase activity	4.45E-04
20	GO:0046556: alpha-L-arabinofuranosidase activity	4.45E-04
21	GO:0010385: double-stranded methylated DNA binding	4.45E-04
22	GO:0008237: metallopeptidase activity	4.63E-04
23	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	5.66E-04
24	GO:0031593: polyubiquitin binding	6.92E-04
25	GO:0004222: metalloendopeptidase activity	7.35E-04
26	GO:0004144: diacylglycerol O-acyltransferase activity	8.25E-04
27	GO:0008235: metalloexopeptidase activity	9.62E-04
28	GO:0004427: inorganic diphosphatase activity	9.62E-04
29	GO:0016844: strictosidine synthase activity	1.58E-03
30	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.93E-03
31	GO:0001054: RNA polymerase I activity	1.93E-03
32	GO:0004177: aminopeptidase activity	1.93E-03
33	GO:0043130: ubiquitin binding	3.11E-03
34	GO:0004812: aminoacyl-tRNA ligase activity	4.47E-03
35	GO:0004402: histone acetyltransferase activity	4.71E-03
36	GO:0008536: Ran GTPase binding	4.96E-03
37	GO:0001085: RNA polymerase II transcription factor binding	4.96E-03
38	GO:0003682: chromatin binding	5.58E-03
39	GO:0008233: peptidase activity	6.43E-03
40	GO:0003684: damaged DNA binding	6.55E-03
41	GO:0005506: iron ion binding	6.98E-03
42	GO:0016413: O-acetyltransferase activity	7.11E-03
43	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	9.86E-03
44	GO:0042393: histone binding	1.15E-02
45	GO:0051537: 2 iron, 2 sulfur cluster binding	1.33E-02
46	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.55E-02
47	GO:0046872: metal ion binding	2.12E-02
48	GO:0030246: carbohydrate binding	2.31E-02
49	GO:0019843: rRNA binding	2.34E-02
50	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.38E-02
51	GO:0004252: serine-type endopeptidase activity	2.52E-02
52	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.57E-02
53	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.80E-02
54	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.49E-02
55	GO:0003824: catalytic activity	3.82E-02
56	GO:0004497: monooxygenase activity	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0009507: chloroplast	3.49E-06
3	GO:0005811: lipid particle	1.26E-03
4	GO:0005736: DNA-directed RNA polymerase I complex	1.41E-03
5	GO:0016324: apical plasma membrane	1.75E-03
6	GO:0009570: chloroplast stroma	1.93E-03
7	GO:0009532: plastid stroma	3.54E-03
8	GO:0005802: trans-Golgi network	5.29E-03
9	GO:0005768: endosome	6.23E-03
10	GO:0030529: intracellular ribonucleoprotein complex	7.40E-03
11	GO:0005667: transcription factor complex	7.99E-03
12	GO:0009505: plant-type cell wall	9.48E-03
13	GO:0005789: endoplasmic reticulum membrane	1.22E-02
14	GO:0009706: chloroplast inner membrane	1.99E-02
15	GO:0016021: integral component of membrane	2.63E-02
16	GO:0031969: chloroplast membrane	4.68E-02
17	GO:0000139: Golgi membrane	4.69E-02
18	GO:0009941: chloroplast envelope	4.96E-02