co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54610

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090400: stress-induced premature senescence	0.00E+00
2	GO:0046680: response to DDT	0.00E+00
3	GO:0006903: vesicle targeting	0.00E+00
4	GO:0072722: response to amitrole	0.00E+00
5	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
6	GO:0006216: cytidine catabolic process	0.00E+00
7	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
8	GO:1904250: positive regulation of age-related resistance	0.00E+00
9	GO:0010398: xylogalacturonan metabolic process	0.00E+00
10	GO:0016102: diterpenoid biosynthetic process	0.00E+00
11	GO:0046686: response to cadmium ion	5.33E-05
12	GO:0006102: isocitrate metabolic process	2.38E-04
13	GO:0000032: cell wall mannoprotein biosynthetic process	2.55E-04
14	GO:0042964: thioredoxin reduction	2.55E-04
15	GO:0006680: glucosylceramide catabolic process	2.55E-04
16	GO:1900384: regulation of flavonol biosynthetic process	2.55E-04
17	GO:0010421: hydrogen peroxide-mediated programmed cell death	2.55E-04
18	GO:0030163: protein catabolic process	3.41E-04
19	GO:0015031: protein transport	4.81E-04
20	GO:0015709: thiosulfate transport	5.64E-04
21	GO:0009805: coumarin biosynthetic process	5.64E-04
22	GO:0071422: succinate transmembrane transport	5.64E-04
23	GO:0046939: nucleotide phosphorylation	5.64E-04
24	GO:0080026: response to indolebutyric acid	5.64E-04
25	GO:0055046: microgametogenesis	7.37E-04
26	GO:0006807: nitrogen compound metabolic process	7.37E-04
27	GO:0006886: intracellular protein transport	8.43E-04
28	GO:0040009: regulation of growth rate	9.15E-04
29	GO:0006517: protein deglycosylation	9.15E-04
30	GO:0010272: response to silver ion	9.15E-04
31	GO:0006556: S-adenosylmethionine biosynthetic process	9.15E-04
32	GO:0009062: fatty acid catabolic process	9.15E-04
33	GO:0033591: response to L-ascorbic acid	9.15E-04
34	GO:0061158: 3'-UTR-mediated mRNA destabilization	9.15E-04
35	GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity	9.15E-04
36	GO:0010253: UDP-rhamnose biosynthetic process	9.15E-04
37	GO:0006099: tricarboxylic acid cycle	9.27E-04
38	GO:0055114: oxidation-reduction process	9.96E-04
39	GO:0006612: protein targeting to membrane	1.31E-03
40	GO:0006893: Golgi to plasma membrane transport	1.31E-03
41	GO:0009298: GDP-mannose biosynthetic process	1.31E-03
42	GO:0015729: oxaloacetate transport	1.31E-03
43	GO:0080024: indolebutyric acid metabolic process	1.31E-03
44	GO:0000187: activation of MAPK activity	1.31E-03
45	GO:0010222: stem vascular tissue pattern formation	1.75E-03
46	GO:1902584: positive regulation of response to water deprivation	1.75E-03
47	GO:0010188: response to microbial phytotoxin	1.75E-03
48	GO:0009651: response to salt stress	1.77E-03
49	GO:0006096: glycolytic process	2.17E-03
50	GO:0071423: malate transmembrane transport	2.23E-03
51	GO:0000304: response to singlet oxygen	2.23E-03
52	GO:0098719: sodium ion import across plasma membrane	2.23E-03
53	GO:0046283: anthocyanin-containing compound metabolic process	2.23E-03
54	GO:0006564: L-serine biosynthetic process	2.23E-03
55	GO:0045927: positive regulation of growth	2.23E-03
56	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.23E-03
57	GO:0060918: auxin transport	2.75E-03
58	GO:0035435: phosphate ion transmembrane transport	2.75E-03
59	GO:0006555: methionine metabolic process	2.75E-03
60	GO:0009972: cytidine deamination	2.75E-03
61	GO:0010315: auxin efflux	2.75E-03
62	GO:0016192: vesicle-mediated transport	2.96E-03
63	GO:0034389: lipid particle organization	3.30E-03
64	GO:0009082: branched-chain amino acid biosynthetic process	3.30E-03
65	GO:0019509: L-methionine salvage from methylthioadenosine	3.30E-03
66	GO:0009099: valine biosynthetic process	3.30E-03
67	GO:0009554: megasporogenesis	3.30E-03
68	GO:0080113: regulation of seed growth	3.30E-03
69	GO:0010252: auxin homeostasis	3.33E-03
70	GO:0045454: cell redox homeostasis	3.61E-03
71	GO:0080027: response to herbivore	3.89E-03
72	GO:0008272: sulfate transport	3.89E-03
73	GO:0050829: defense response to Gram-negative bacterium	3.89E-03
74	GO:1900057: positive regulation of leaf senescence	3.89E-03
75	GO:0080186: developmental vegetative growth	3.89E-03
76	GO:1902074: response to salt	3.89E-03
77	GO:0071669: plant-type cell wall organization or biogenesis	3.89E-03
78	GO:0009058: biosynthetic process	3.90E-03
79	GO:0009615: response to virus	3.97E-03
80	GO:0009627: systemic acquired resistance	4.44E-03
81	GO:0006491: N-glycan processing	4.52E-03
82	GO:0043068: positive regulation of programmed cell death	4.52E-03
83	GO:0009819: drought recovery	4.52E-03
84	GO:0006888: ER to Golgi vesicle-mediated transport	4.68E-03
85	GO:0019430: removal of superoxide radicals	5.18E-03
86	GO:0009699: phenylpropanoid biosynthetic process	5.18E-03
87	GO:0006002: fructose 6-phosphate metabolic process	5.18E-03
88	GO:0009097: isoleucine biosynthetic process	5.18E-03
89	GO:0060321: acceptance of pollen	5.18E-03
90	GO:0010150: leaf senescence	5.49E-03
91	GO:0009407: toxin catabolic process	5.71E-03
92	GO:0009821: alkaloid biosynthetic process	5.86E-03
93	GO:0046685: response to arsenic-containing substance	5.86E-03
94	GO:0010043: response to zinc ion	5.99E-03
95	GO:0051453: regulation of intracellular pH	6.58E-03
96	GO:0009098: leucine biosynthetic process	6.58E-03
97	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.58E-03
98	GO:0006032: chitin catabolic process	7.33E-03
99	GO:0051555: flavonol biosynthetic process	7.33E-03
100	GO:0009688: abscisic acid biosynthetic process	7.33E-03
101	GO:0043069: negative regulation of programmed cell death	7.33E-03
102	GO:0000272: polysaccharide catabolic process	8.11E-03
103	GO:0000209: protein polyubiquitination	8.81E-03
104	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	8.92E-03
105	GO:0006790: sulfur compound metabolic process	8.92E-03
106	GO:0016925: protein sumoylation	8.92E-03
107	GO:0009636: response to toxic substance	9.53E-03
108	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	9.75E-03
109	GO:0010102: lateral root morphogenesis	9.75E-03
110	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.03E-02
111	GO:0009846: pollen germination	1.06E-02
112	GO:0046854: phosphatidylinositol phosphorylation	1.15E-02
113	GO:0019853: L-ascorbic acid biosynthetic process	1.15E-02
114	GO:0010053: root epidermal cell differentiation	1.15E-02
115	GO:0009225: nucleotide-sugar metabolic process	1.15E-02
116	GO:0007031: peroxisome organization	1.15E-02
117	GO:0007030: Golgi organization	1.15E-02
118	GO:0034976: response to endoplasmic reticulum stress	1.24E-02
119	GO:0000162: tryptophan biosynthetic process	1.24E-02
120	GO:0009620: response to fungus	1.49E-02
121	GO:0019915: lipid storage	1.53E-02
122	GO:0016998: cell wall macromolecule catabolic process	1.53E-02
123	GO:0015992: proton transport	1.53E-02
124	GO:0009814: defense response, incompatible interaction	1.64E-02
125	GO:0019748: secondary metabolic process	1.64E-02
126	GO:0006730: one-carbon metabolic process	1.64E-02
127	GO:0030245: cellulose catabolic process	1.64E-02
128	GO:0030433: ubiquitin-dependent ERAD pathway	1.64E-02
129	GO:0010227: floral organ abscission	1.74E-02
130	GO:0009693: ethylene biosynthetic process	1.74E-02
131	GO:0009561: megagametogenesis	1.85E-02
132	GO:0042127: regulation of cell proliferation	1.85E-02
133	GO:0009306: protein secretion	1.85E-02
134	GO:0009751: response to salicylic acid	2.03E-02
135	GO:0042631: cellular response to water deprivation	2.07E-02
136	GO:0010051: xylem and phloem pattern formation	2.07E-02
137	GO:0006662: glycerol ether metabolic process	2.18E-02
138	GO:0045489: pectin biosynthetic process	2.18E-02
139	GO:0006814: sodium ion transport	2.29E-02
140	GO:0009646: response to absence of light	2.29E-02
141	GO:0009851: auxin biosynthetic process	2.41E-02
142	GO:0006635: fatty acid beta-oxidation	2.53E-02
143	GO:0071281: cellular response to iron ion	2.78E-02
144	GO:1901657: glycosyl compound metabolic process	2.78E-02
145	GO:0045490: pectin catabolic process	2.83E-02
146	GO:0009567: double fertilization forming a zygote and endosperm	2.90E-02
147	GO:0006464: cellular protein modification process	2.90E-02
148	GO:0019760: glucosinolate metabolic process	2.90E-02
149	GO:0006914: autophagy	2.90E-02
150	GO:0006904: vesicle docking involved in exocytosis	3.03E-02
151	GO:0071805: potassium ion transmembrane transport	3.03E-02
152	GO:0051607: defense response to virus	3.16E-02
153	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.16E-02
154	GO:0009617: response to bacterium	3.37E-02
155	GO:0010468: regulation of gene expression	3.37E-02
156	GO:0010029: regulation of seed germination	3.42E-02
157	GO:0006979: response to oxidative stress	3.42E-02
158	GO:0016049: cell growth	3.83E-02
159	GO:0009733: response to auxin	4.00E-02
160	GO:0048767: root hair elongation	4.12E-02
161	GO:0010311: lateral root formation	4.12E-02
162	GO:0006499: N-terminal protein myristoylation	4.26E-02
163	GO:0009631: cold acclimation	4.41E-02
164	GO:0048527: lateral root development	4.41E-02
165	GO:0007568: aging	4.41E-02
166	GO:0009860: pollen tube growth	4.69E-02
167	GO:0016051: carbohydrate biosynthetic process	4.70E-02
168	GO:0034599: cellular response to oxidative stress	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0047844: deoxycytidine deaminase activity	0.00E+00
3	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
4	GO:0070577: lysine-acetylated histone binding	0.00E+00
5	GO:0080013: (E,E)-geranyllinalool synthase activity	0.00E+00
6	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.46E-05
7	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.04E-04
8	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.04E-04
9	GO:0008320: protein transmembrane transporter activity	1.88E-04
10	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	2.55E-04
11	GO:0016229: steroid dehydrogenase activity	2.55E-04
12	GO:0048037: cofactor binding	2.55E-04
13	GO:0004476: mannose-6-phosphate isomerase activity	2.55E-04
14	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.55E-04
15	GO:0019786: Atg8-specific protease activity	2.55E-04
16	GO:0004348: glucosylceramidase activity	2.55E-04
17	GO:0070401: NADP+ binding	2.55E-04
18	GO:0004743: pyruvate kinase activity	4.21E-04
19	GO:0030955: potassium ion binding	4.21E-04
20	GO:0019779: Atg8 activating enzyme activity	5.64E-04
21	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	5.64E-04
22	GO:0052739: phosphatidylserine 1-acylhydrolase activity	5.64E-04
23	GO:0050377: UDP-glucose 4,6-dehydratase activity	5.64E-04
24	GO:0004617: phosphoglycerate dehydrogenase activity	5.64E-04
25	GO:1990585: hydroxyproline O-arabinosyltransferase activity	5.64E-04
26	GO:0010280: UDP-L-rhamnose synthase activity	5.64E-04
27	GO:0010297: heteropolysaccharide binding	5.64E-04
28	GO:0008460: dTDP-glucose 4,6-dehydratase activity	5.64E-04
29	GO:0015117: thiosulfate transmembrane transporter activity	5.64E-04
30	GO:1901677: phosphate transmembrane transporter activity	5.64E-04
31	GO:0008805: carbon-monoxide oxygenase activity	5.64E-04
32	GO:0004776: succinate-CoA ligase (GDP-forming) activity	5.64E-04
33	GO:0004775: succinate-CoA ligase (ADP-forming) activity	5.64E-04
34	GO:0015141: succinate transmembrane transporter activity	9.15E-04
35	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	9.15E-04
36	GO:0004478: methionine adenosyltransferase activity	9.15E-04
37	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	9.15E-04
38	GO:0005310: dicarboxylic acid transmembrane transporter activity	9.15E-04
39	GO:0015131: oxaloacetate transmembrane transporter activity	1.31E-03
40	GO:0052655: L-valine transaminase activity	1.31E-03
41	GO:0017077: oxidative phosphorylation uncoupler activity	1.31E-03
42	GO:0019201: nucleotide kinase activity	1.31E-03
43	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.31E-03
44	GO:0052656: L-isoleucine transaminase activity	1.31E-03
45	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.31E-03
46	GO:0052654: L-leucine transaminase activity	1.31E-03
47	GO:0070628: proteasome binding	1.75E-03
48	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.75E-03
49	GO:0004031: aldehyde oxidase activity	1.75E-03
50	GO:0050302: indole-3-acetaldehyde oxidase activity	1.75E-03
51	GO:0019776: Atg8 ligase activity	1.75E-03
52	GO:0010279: indole-3-acetic acid amido synthetase activity	1.75E-03
53	GO:0004084: branched-chain-amino-acid transaminase activity	1.75E-03
54	GO:0000287: magnesium ion binding	1.92E-03
55	GO:0004040: amidase activity	2.23E-03
56	GO:0008374: O-acyltransferase activity	2.23E-03
57	GO:0031386: protein tag	2.23E-03
58	GO:0004791: thioredoxin-disulfide reductase activity	2.40E-03
59	GO:0035252: UDP-xylosyltransferase activity	2.75E-03
60	GO:0004017: adenylate kinase activity	3.30E-03
61	GO:0004126: cytidine deaminase activity	3.30E-03
62	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.30E-03
63	GO:0003950: NAD+ ADP-ribosyltransferase activity	3.30E-03
64	GO:0043295: glutathione binding	3.89E-03
65	GO:0003872: 6-phosphofructokinase activity	3.89E-03
66	GO:0015140: malate transmembrane transporter activity	3.89E-03
67	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.52E-03
68	GO:0004033: aldo-keto reductase (NADP) activity	4.52E-03
69	GO:0004708: MAP kinase kinase activity	4.52E-03
70	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	5.18E-03
71	GO:0016844: strictosidine synthase activity	6.58E-03
72	GO:0009672: auxin:proton symporter activity	6.58E-03
73	GO:0004568: chitinase activity	7.33E-03
74	GO:0008559: xenobiotic-transporting ATPase activity	8.11E-03
75	GO:0015386: potassium:proton antiporter activity	8.11E-03
76	GO:0004364: glutathione transferase activity	8.13E-03
77	GO:0015116: sulfate transmembrane transporter activity	8.92E-03
78	GO:0005198: structural molecule activity	9.53E-03
79	GO:0010329: auxin efflux transmembrane transporter activity	9.75E-03
80	GO:0031072: heat shock protein binding	9.75E-03
81	GO:0051287: NAD binding	1.03E-02
82	GO:0031624: ubiquitin conjugating enzyme binding	1.06E-02
83	GO:0004190: aspartic-type endopeptidase activity	1.15E-02
84	GO:0050660: flavin adenine dinucleotide binding	1.15E-02
85	GO:0008061: chitin binding	1.15E-02
86	GO:0031625: ubiquitin protein ligase binding	1.27E-02
87	GO:0051536: iron-sulfur cluster binding	1.34E-02
88	GO:0061630: ubiquitin protein ligase activity	1.34E-02
89	GO:0010333: terpene synthase activity	1.53E-02
90	GO:0008408: 3'-5' exonuclease activity	1.53E-02
91	GO:0004298: threonine-type endopeptidase activity	1.53E-02
92	GO:0046872: metal ion binding	1.55E-02
93	GO:0015035: protein disulfide oxidoreductase activity	1.68E-02
94	GO:0008810: cellulase activity	1.74E-02
95	GO:0003756: protein disulfide isomerase activity	1.85E-02
96	GO:0003727: single-stranded RNA binding	1.85E-02
97	GO:0047134: protein-disulfide reductase activity	1.95E-02
98	GO:0005199: structural constituent of cell wall	2.18E-02
99	GO:0001085: RNA polymerase II transcription factor binding	2.18E-02
100	GO:0004527: exonuclease activity	2.18E-02
101	GO:0009055: electron carrier activity	2.25E-02
102	GO:0030170: pyridoxal phosphate binding	2.27E-02
103	GO:0016853: isomerase activity	2.29E-02
104	GO:0004518: nuclease activity	2.65E-02
105	GO:0015385: sodium:proton antiporter activity	2.78E-02
106	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.78E-02
107	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.03E-02
108	GO:0008237: metallopeptidase activity	3.03E-02
109	GO:0016597: amino acid binding	3.16E-02
110	GO:0051213: dioxygenase activity	3.29E-02
111	GO:0008375: acetylglucosaminyltransferase activity	3.56E-02
112	GO:0016887: ATPase activity	3.56E-02
113	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.70E-02
114	GO:0102483: scopolin beta-glucosidase activity	3.70E-02
115	GO:0003824: catalytic activity	3.87E-02
116	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.97E-02
117	GO:0004601: peroxidase activity	4.36E-02
118	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.41E-02
119	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.41E-02
120	GO:0016301: kinase activity	4.52E-02
121	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.70E-02
122	GO:0003746: translation elongation factor activity	4.70E-02
123	GO:0043531: ADP binding	4.77E-02
124	GO:0003993: acid phosphatase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	1.47E-05
2	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.88E-04
3	GO:0032580: Golgi cisterna membrane	3.69E-04
4	GO:0030132: clathrin coat of coated pit	9.15E-04
5	GO:0009530: primary cell wall	9.15E-04
6	GO:0030130: clathrin coat of trans-Golgi network vesicle	9.15E-04
7	GO:0005886: plasma membrane	1.04E-03
8	GO:0005775: vacuolar lumen	1.31E-03
9	GO:0005839: proteasome core complex	1.37E-03
10	GO:0000502: proteasome complex	1.75E-03
11	GO:0005776: autophagosome	1.75E-03
12	GO:0005737: cytoplasm	1.88E-03
13	GO:0005783: endoplasmic reticulum	1.90E-03
14	GO:0005945: 6-phosphofructokinase complex	2.23E-03
15	GO:0030127: COPII vesicle coat	2.75E-03
16	GO:0005794: Golgi apparatus	2.90E-03
17	GO:0030173: integral component of Golgi membrane	3.30E-03
18	GO:0031982: vesicle	4.52E-03
19	GO:0000421: autophagosome membrane	4.52E-03
20	GO:0019773: proteasome core complex, alpha-subunit complex	5.18E-03
21	GO:0005811: lipid particle	5.18E-03
22	GO:0005774: vacuolar membrane	5.27E-03
23	GO:0031901: early endosome membrane	5.86E-03
24	GO:0031090: organelle membrane	5.86E-03
25	GO:0005789: endoplasmic reticulum membrane	7.47E-03
26	GO:0008541: proteasome regulatory particle, lid subcomplex	8.11E-03
27	GO:0005768: endosome	8.97E-03
28	GO:0031410: cytoplasmic vesicle	1.64E-02
29	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.85E-02
30	GO:0005802: trans-Golgi network	2.40E-02
31	GO:0009506: plasmodesma	2.52E-02
32	GO:0000145: exocyst	2.65E-02
33	GO:0016592: mediator complex	2.65E-02
34	GO:0071944: cell periphery	2.78E-02
35	GO:0005778: peroxisomal membrane	3.03E-02
36	GO:0005773: vacuole	3.37E-02
37	GO:0005788: endoplasmic reticulum lumen	3.42E-02
38	GO:0005667: transcription factor complex	3.56E-02
39	GO:0016021: integral component of membrane	3.95E-02
40	GO:0000151: ubiquitin ligase complex	3.97E-02
41	GO:0000325: plant-type vacuole	4.41E-02
42	GO:0005777: peroxisome	4.98E-02