GO Enrichment Analysis of Co-expressed Genes with
AT5G54585
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 2 | GO:0051924: regulation of calcium ion transport | 0.00E+00 |
| 3 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 4 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 5 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 6 | GO:1905157: positive regulation of photosynthesis | 0.00E+00 |
| 7 | GO:0097275: cellular ammonia homeostasis | 0.00E+00 |
| 8 | GO:0009773: photosynthetic electron transport in photosystem I | 7.43E-09 |
| 9 | GO:0015979: photosynthesis | 2.51E-07 |
| 10 | GO:0006094: gluconeogenesis | 1.17E-06 |
| 11 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.71E-06 |
| 12 | GO:0055114: oxidation-reduction process | 9.38E-06 |
| 13 | GO:0032544: plastid translation | 1.00E-05 |
| 14 | GO:0006000: fructose metabolic process | 1.33E-05 |
| 15 | GO:0005983: starch catabolic process | 3.93E-05 |
| 16 | GO:0015994: chlorophyll metabolic process | 5.37E-05 |
| 17 | GO:0010207: photosystem II assembly | 5.88E-05 |
| 18 | GO:0015995: chlorophyll biosynthetic process | 6.80E-05 |
| 19 | GO:0006636: unsaturated fatty acid biosynthetic process | 8.35E-05 |
| 20 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.14E-04 |
| 21 | GO:1901259: chloroplast rRNA processing | 1.69E-04 |
| 22 | GO:0010114: response to red light | 1.98E-04 |
| 23 | GO:0010196: nonphotochemical quenching | 2.21E-04 |
| 24 | GO:0006662: glycerol ether metabolic process | 2.65E-04 |
| 25 | GO:0009642: response to light intensity | 2.80E-04 |
| 26 | GO:0000025: maltose catabolic process | 2.84E-04 |
| 27 | GO:0005980: glycogen catabolic process | 2.84E-04 |
| 28 | GO:0009090: homoserine biosynthetic process | 2.84E-04 |
| 29 | GO:0019276: UDP-N-acetylgalactosamine metabolic process | 2.84E-04 |
| 30 | GO:0010028: xanthophyll cycle | 2.84E-04 |
| 31 | GO:0034337: RNA folding | 2.84E-04 |
| 32 | GO:0000023: maltose metabolic process | 2.84E-04 |
| 33 | GO:0006047: UDP-N-acetylglucosamine metabolic process | 2.84E-04 |
| 34 | GO:0032259: methylation | 3.16E-04 |
| 35 | GO:0006002: fructose 6-phosphate metabolic process | 3.44E-04 |
| 36 | GO:0006098: pentose-phosphate shunt | 4.15E-04 |
| 37 | GO:0010206: photosystem II repair | 4.15E-04 |
| 38 | GO:0005982: starch metabolic process | 4.91E-04 |
| 39 | GO:0080029: cellular response to boron-containing substance levels | 6.25E-04 |
| 40 | GO:0006898: receptor-mediated endocytosis | 6.25E-04 |
| 41 | GO:0005976: polysaccharide metabolic process | 6.25E-04 |
| 42 | GO:0010353: response to trehalose | 6.25E-04 |
| 43 | GO:0016122: xanthophyll metabolic process | 6.25E-04 |
| 44 | GO:0015804: neutral amino acid transport | 6.25E-04 |
| 45 | GO:0043085: positive regulation of catalytic activity | 6.61E-04 |
| 46 | GO:0005986: sucrose biosynthetic process | 8.57E-04 |
| 47 | GO:0006048: UDP-N-acetylglucosamine biosynthetic process | 1.01E-03 |
| 48 | GO:0090391: granum assembly | 1.01E-03 |
| 49 | GO:0006518: peptide metabolic process | 1.01E-03 |
| 50 | GO:0034599: cellular response to oxidative stress | 1.13E-03 |
| 51 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.45E-03 |
| 52 | GO:0046713: borate transport | 1.45E-03 |
| 53 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.45E-03 |
| 54 | GO:0009067: aspartate family amino acid biosynthetic process | 1.45E-03 |
| 55 | GO:1902358: sulfate transmembrane transport | 1.45E-03 |
| 56 | GO:0006020: inositol metabolic process | 1.45E-03 |
| 57 | GO:0071484: cellular response to light intensity | 1.45E-03 |
| 58 | GO:0009152: purine ribonucleotide biosynthetic process | 1.45E-03 |
| 59 | GO:0046653: tetrahydrofolate metabolic process | 1.45E-03 |
| 60 | GO:0061077: chaperone-mediated protein folding | 1.60E-03 |
| 61 | GO:0045727: positive regulation of translation | 1.94E-03 |
| 62 | GO:0006021: inositol biosynthetic process | 1.94E-03 |
| 63 | GO:0071483: cellular response to blue light | 1.94E-03 |
| 64 | GO:0010021: amylopectin biosynthetic process | 1.94E-03 |
| 65 | GO:0009765: photosynthesis, light harvesting | 1.94E-03 |
| 66 | GO:0006109: regulation of carbohydrate metabolic process | 1.94E-03 |
| 67 | GO:0006364: rRNA processing | 2.14E-03 |
| 68 | GO:0006656: phosphatidylcholine biosynthetic process | 2.48E-03 |
| 69 | GO:0009904: chloroplast accumulation movement | 2.48E-03 |
| 70 | GO:0009409: response to cold | 2.61E-03 |
| 71 | GO:0019252: starch biosynthetic process | 3.01E-03 |
| 72 | GO:1902456: regulation of stomatal opening | 3.06E-03 |
| 73 | GO:0046855: inositol phosphate dephosphorylation | 3.06E-03 |
| 74 | GO:0010190: cytochrome b6f complex assembly | 3.06E-03 |
| 75 | GO:0009643: photosynthetic acclimation | 3.06E-03 |
| 76 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 3.06E-03 |
| 77 | GO:0042549: photosystem II stabilization | 3.06E-03 |
| 78 | GO:0006810: transport | 3.12E-03 |
| 79 | GO:1901657: glycosyl compound metabolic process | 3.66E-03 |
| 80 | GO:0009903: chloroplast avoidance movement | 3.68E-03 |
| 81 | GO:0009088: threonine biosynthetic process | 3.68E-03 |
| 82 | GO:0009955: adaxial/abaxial pattern specification | 3.68E-03 |
| 83 | GO:0008272: sulfate transport | 4.34E-03 |
| 84 | GO:0009769: photosynthesis, light harvesting in photosystem II | 4.34E-03 |
| 85 | GO:0009645: response to low light intensity stimulus | 4.34E-03 |
| 86 | GO:0009610: response to symbiotic fungus | 4.34E-03 |
| 87 | GO:0009772: photosynthetic electron transport in photosystem II | 4.34E-03 |
| 88 | GO:0045454: cell redox homeostasis | 4.59E-03 |
| 89 | GO:0010027: thylakoid membrane organization | 4.64E-03 |
| 90 | GO:0005978: glycogen biosynthetic process | 5.03E-03 |
| 91 | GO:0030091: protein repair | 5.03E-03 |
| 92 | GO:0016311: dephosphorylation | 5.76E-03 |
| 93 | GO:0009657: plastid organization | 5.77E-03 |
| 94 | GO:0015996: chlorophyll catabolic process | 5.77E-03 |
| 95 | GO:0018298: protein-chromophore linkage | 6.06E-03 |
| 96 | GO:0009821: alkaloid biosynthetic process | 6.54E-03 |
| 97 | GO:0006754: ATP biosynthetic process | 6.54E-03 |
| 98 | GO:0010218: response to far red light | 6.68E-03 |
| 99 | GO:0009086: methionine biosynthetic process | 7.35E-03 |
| 100 | GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 7.35E-03 |
| 101 | GO:0010205: photoinhibition | 7.35E-03 |
| 102 | GO:0009637: response to blue light | 7.68E-03 |
| 103 | GO:0009641: shade avoidance | 8.19E-03 |
| 104 | GO:0009089: lysine biosynthetic process via diaminopimelate | 9.06E-03 |
| 105 | GO:0006415: translational termination | 9.06E-03 |
| 106 | GO:0000272: polysaccharide catabolic process | 9.06E-03 |
| 107 | GO:0009750: response to fructose | 9.06E-03 |
| 108 | GO:0018119: peptidyl-cysteine S-nitrosylation | 9.06E-03 |
| 109 | GO:0006790: sulfur compound metabolic process | 9.96E-03 |
| 110 | GO:0018107: peptidyl-threonine phosphorylation | 1.09E-02 |
| 111 | GO:0009725: response to hormone | 1.09E-02 |
| 112 | GO:0019253: reductive pentose-phosphate cycle | 1.19E-02 |
| 113 | GO:0007015: actin filament organization | 1.19E-02 |
| 114 | GO:0010223: secondary shoot formation | 1.19E-02 |
| 115 | GO:0009266: response to temperature stimulus | 1.19E-02 |
| 116 | GO:0005985: sucrose metabolic process | 1.29E-02 |
| 117 | GO:0046854: phosphatidylinositol phosphorylation | 1.29E-02 |
| 118 | GO:0080147: root hair cell development | 1.50E-02 |
| 119 | GO:0006096: glycolytic process | 1.59E-02 |
| 120 | GO:0009269: response to desiccation | 1.72E-02 |
| 121 | GO:0003333: amino acid transmembrane transport | 1.72E-02 |
| 122 | GO:0016226: iron-sulfur cluster assembly | 1.83E-02 |
| 123 | GO:0030433: ubiquitin-dependent ERAD pathway | 1.83E-02 |
| 124 | GO:0019748: secondary metabolic process | 1.83E-02 |
| 125 | GO:0016117: carotenoid biosynthetic process | 2.19E-02 |
| 126 | GO:0000413: protein peptidyl-prolyl isomerization | 2.31E-02 |
| 127 | GO:0042631: cellular response to water deprivation | 2.31E-02 |
| 128 | GO:0009741: response to brassinosteroid | 2.44E-02 |
| 129 | GO:0009058: biosynthetic process | 2.53E-02 |
| 130 | GO:0015986: ATP synthesis coupled proton transport | 2.57E-02 |
| 131 | GO:0005975: carbohydrate metabolic process | 2.87E-02 |
| 132 | GO:0032502: developmental process | 2.97E-02 |
| 133 | GO:0009630: gravitropism | 2.97E-02 |
| 134 | GO:0046686: response to cadmium ion | 3.00E-02 |
| 135 | GO:0006633: fatty acid biosynthetic process | 3.01E-02 |
| 136 | GO:0016126: sterol biosynthetic process | 3.68E-02 |
| 137 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 3.83E-02 |
| 138 | GO:0006979: response to oxidative stress | 4.30E-02 |
| 139 | GO:0009813: flavonoid biosynthetic process | 4.60E-02 |
| 140 | GO:0009631: cold acclimation | 4.93E-02 |
| 141 | GO:0007568: aging | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 2 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 3 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 4 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 5 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 6 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 7 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 8 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 9 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 10 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 11 | GO:0010297: heteropolysaccharide binding | 3.71E-06 |
| 12 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.71E-06 |
| 13 | GO:0031409: pigment binding | 8.35E-05 |
| 14 | GO:0004332: fructose-bisphosphate aldolase activity | 1.23E-04 |
| 15 | GO:0047134: protein-disulfide reductase activity | 2.14E-04 |
| 16 | GO:0016491: oxidoreductase activity | 2.22E-04 |
| 17 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 2.84E-04 |
| 18 | GO:0004134: 4-alpha-glucanotransferase activity | 2.84E-04 |
| 19 | GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity | 2.84E-04 |
| 20 | GO:0045485: omega-6 fatty acid desaturase activity | 2.84E-04 |
| 21 | GO:0004645: phosphorylase activity | 2.84E-04 |
| 22 | GO:0034256: chlorophyll(ide) b reductase activity | 2.84E-04 |
| 23 | GO:0015168: glycerol transmembrane transporter activity | 2.84E-04 |
| 24 | GO:0045486: naringenin 3-dioxygenase activity | 2.84E-04 |
| 25 | GO:0035671: enone reductase activity | 2.84E-04 |
| 26 | GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity | 2.84E-04 |
| 27 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 2.84E-04 |
| 28 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 2.84E-04 |
| 29 | GO:0080079: cellobiose glucosidase activity | 2.84E-04 |
| 30 | GO:0050521: alpha-glucan, water dikinase activity | 2.84E-04 |
| 31 | GO:0008184: glycogen phosphorylase activity | 2.84E-04 |
| 32 | GO:0004791: thioredoxin-disulfide reductase activity | 2.92E-04 |
| 33 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 4.17E-04 |
| 34 | GO:0008168: methyltransferase activity | 4.89E-04 |
| 35 | GO:0008047: enzyme activator activity | 5.73E-04 |
| 36 | GO:0016168: chlorophyll binding | 6.09E-04 |
| 37 | GO:0008934: inositol monophosphate 1-phosphatase activity | 6.25E-04 |
| 38 | GO:0018708: thiol S-methyltransferase activity | 6.25E-04 |
| 39 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 6.25E-04 |
| 40 | GO:0052833: inositol monophosphate 4-phosphatase activity | 6.25E-04 |
| 41 | GO:0004412: homoserine dehydrogenase activity | 6.25E-04 |
| 42 | GO:0008967: phosphoglycolate phosphatase activity | 6.25E-04 |
| 43 | GO:0019172: glyoxalase III activity | 6.25E-04 |
| 44 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 6.25E-04 |
| 45 | GO:0015172: acidic amino acid transmembrane transporter activity | 6.25E-04 |
| 46 | GO:0047746: chlorophyllase activity | 6.25E-04 |
| 47 | GO:0042389: omega-3 fatty acid desaturase activity | 6.25E-04 |
| 48 | GO:0052832: inositol monophosphate 3-phosphatase activity | 6.25E-04 |
| 49 | GO:0033201: alpha-1,4-glucan synthase activity | 6.25E-04 |
| 50 | GO:0043169: cation binding | 1.01E-03 |
| 51 | GO:0004373: glycogen (starch) synthase activity | 1.01E-03 |
| 52 | GO:0004751: ribose-5-phosphate isomerase activity | 1.01E-03 |
| 53 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 1.01E-03 |
| 54 | GO:0008864: formyltetrahydrofolate deformylase activity | 1.01E-03 |
| 55 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 1.01E-03 |
| 56 | GO:0005528: FK506 binding | 1.32E-03 |
| 57 | GO:0015175: neutral amino acid transmembrane transporter activity | 1.45E-03 |
| 58 | GO:0016851: magnesium chelatase activity | 1.45E-03 |
| 59 | GO:0016149: translation release factor activity, codon specific | 1.45E-03 |
| 60 | GO:0022890: inorganic cation transmembrane transporter activity | 1.45E-03 |
| 61 | GO:0046715: borate transmembrane transporter activity | 1.45E-03 |
| 62 | GO:0004072: aspartate kinase activity | 1.45E-03 |
| 63 | GO:0019201: nucleotide kinase activity | 1.45E-03 |
| 64 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.78E-03 |
| 65 | GO:0009011: starch synthase activity | 1.94E-03 |
| 66 | GO:0015204: urea transmembrane transporter activity | 1.94E-03 |
| 67 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.94E-03 |
| 68 | GO:0004462: lactoylglutathione lyase activity | 3.06E-03 |
| 69 | GO:0008200: ion channel inhibitor activity | 3.06E-03 |
| 70 | GO:2001070: starch binding | 3.06E-03 |
| 71 | GO:0048038: quinone binding | 3.22E-03 |
| 72 | GO:0015035: protein disulfide oxidoreductase activity | 3.47E-03 |
| 73 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 3.68E-03 |
| 74 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.68E-03 |
| 75 | GO:0004017: adenylate kinase activity | 3.68E-03 |
| 76 | GO:0004602: glutathione peroxidase activity | 3.68E-03 |
| 77 | GO:0019843: rRNA binding | 4.45E-03 |
| 78 | GO:0102483: scopolin beta-glucosidase activity | 5.47E-03 |
| 79 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 5.77E-03 |
| 80 | GO:0008271: secondary active sulfate transmembrane transporter activity | 5.77E-03 |
| 81 | GO:0071949: FAD binding | 6.54E-03 |
| 82 | GO:0003747: translation release factor activity | 6.54E-03 |
| 83 | GO:0016844: strictosidine synthase activity | 7.35E-03 |
| 84 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 7.35E-03 |
| 85 | GO:0003993: acid phosphatase activity | 8.04E-03 |
| 86 | GO:0030234: enzyme regulator activity | 8.19E-03 |
| 87 | GO:0008422: beta-glucosidase activity | 8.40E-03 |
| 88 | GO:0015386: potassium:proton antiporter activity | 9.06E-03 |
| 89 | GO:0044183: protein binding involved in protein folding | 9.06E-03 |
| 90 | GO:0047372: acylglycerol lipase activity | 9.06E-03 |
| 91 | GO:0015116: sulfate transmembrane transporter activity | 9.96E-03 |
| 92 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.07E-02 |
| 93 | GO:0004565: beta-galactosidase activity | 1.09E-02 |
| 94 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.09E-02 |
| 95 | GO:0031072: heat shock protein binding | 1.09E-02 |
| 96 | GO:0015293: symporter activity | 1.12E-02 |
| 97 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.19E-02 |
| 98 | GO:0051536: iron-sulfur cluster binding | 1.50E-02 |
| 99 | GO:0031418: L-ascorbic acid binding | 1.50E-02 |
| 100 | GO:0004857: enzyme inhibitor activity | 1.50E-02 |
| 101 | GO:0015079: potassium ion transmembrane transporter activity | 1.60E-02 |
| 102 | GO:0016779: nucleotidyltransferase activity | 1.83E-02 |
| 103 | GO:0003756: protein disulfide isomerase activity | 2.07E-02 |
| 104 | GO:0003727: single-stranded RNA binding | 2.07E-02 |
| 105 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 2.28E-02 |
| 106 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 2.44E-02 |
| 107 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.46E-02 |
| 108 | GO:0015299: solute:proton antiporter activity | 2.57E-02 |
| 109 | GO:0050662: coenzyme binding | 2.57E-02 |
| 110 | GO:0004872: receptor activity | 2.70E-02 |
| 111 | GO:0016597: amino acid binding | 3.54E-02 |
| 112 | GO:0015250: water channel activity | 3.68E-02 |
| 113 | GO:0004222: metalloendopeptidase activity | 4.76E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.46E-40 |
| 2 | GO:0009534: chloroplast thylakoid | 6.66E-32 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 5.65E-30 |
| 4 | GO:0009941: chloroplast envelope | 2.89E-14 |
| 5 | GO:0009579: thylakoid | 4.28E-14 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 8.06E-14 |
| 7 | GO:0031977: thylakoid lumen | 4.69E-13 |
| 8 | GO:0009570: chloroplast stroma | 1.01E-12 |
| 9 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.64E-09 |
| 10 | GO:0010287: plastoglobule | 3.24E-08 |
| 11 | GO:0031969: chloroplast membrane | 1.86E-06 |
| 12 | GO:0030076: light-harvesting complex | 7.05E-05 |
| 13 | GO:0042651: thylakoid membrane | 1.14E-04 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 1.14E-04 |
| 15 | GO:0009501: amyloplast | 2.80E-04 |
| 16 | GO:0009515: granal stacked thylakoid | 2.84E-04 |
| 17 | GO:0019898: extrinsic component of membrane | 3.21E-04 |
| 18 | GO:0010319: stromule | 4.89E-04 |
| 19 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 6.25E-04 |
| 20 | GO:0030095: chloroplast photosystem II | 9.62E-04 |
| 21 | GO:0010007: magnesium chelatase complex | 1.01E-03 |
| 22 | GO:0009517: PSII associated light-harvesting complex II | 1.94E-03 |
| 23 | GO:0009544: chloroplast ATP synthase complex | 1.94E-03 |
| 24 | GO:0009522: photosystem I | 2.80E-03 |
| 25 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 3.06E-03 |
| 26 | GO:0005623: cell | 4.60E-03 |
| 27 | GO:0031982: vesicle | 5.03E-03 |
| 28 | GO:0005763: mitochondrial small ribosomal subunit | 6.54E-03 |
| 29 | GO:0032040: small-subunit processome | 9.96E-03 |
| 30 | GO:0015935: small ribosomal subunit | 1.72E-02 |
| 31 | GO:0009706: chloroplast inner membrane | 1.91E-02 |
| 32 | GO:0048046: apoplast | 2.16E-02 |
| 33 | GO:0009523: photosystem II | 2.70E-02 |