co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54530

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
3	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
4	GO:0007050: cell cycle arrest	4.27E-05
5	GO:0010070: zygote asymmetric cell division	9.88E-05
6	GO:0090063: positive regulation of microtubule nucleation	9.88E-05
7	GO:0045786: negative regulation of cell cycle	9.88E-05
8	GO:0033566: gamma-tubulin complex localization	2.32E-04
9	GO:0010069: zygote asymmetric cytokinesis in embryo sac	2.32E-04
10	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.83E-04
11	GO:0006518: peptide metabolic process	3.86E-04
12	GO:0048575: short-day photoperiodism, flowering	3.86E-04
13	GO:0034090: maintenance of meiotic sister chromatid cohesion	3.86E-04
14	GO:0009686: gibberellin biosynthetic process	4.58E-04
15	GO:0033014: tetrapyrrole biosynthetic process	5.54E-04
16	GO:0009956: radial pattern formation	7.37E-04
17	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	1.14E-03
18	GO:0006811: ion transport	1.54E-03
19	GO:0009416: response to light stimulus	1.56E-03
20	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.59E-03
21	GO:0031540: regulation of anthocyanin biosynthetic process	1.84E-03
22	GO:0048564: photosystem I assembly	1.84E-03
23	GO:0045292: mRNA cis splicing, via spliceosome	1.84E-03
24	GO:0016567: protein ubiquitination	2.05E-03
25	GO:0007186: G-protein coupled receptor signaling pathway	2.10E-03
26	GO:0051865: protein autoubiquitination	2.37E-03
27	GO:0006783: heme biosynthetic process	2.37E-03
28	GO:0000373: Group II intron splicing	2.37E-03
29	GO:0048589: developmental growth	2.37E-03
30	GO:0048829: root cap development	2.95E-03
31	GO:0048229: gametophyte development	3.25E-03
32	GO:0016485: protein processing	3.25E-03
33	GO:0010152: pollen maturation	3.57E-03
34	GO:0010229: inflorescence development	3.89E-03
35	GO:0009767: photosynthetic electron transport chain	3.89E-03
36	GO:0010588: cotyledon vascular tissue pattern formation	3.89E-03
37	GO:0009740: gibberellic acid mediated signaling pathway	4.06E-03
38	GO:0009887: animal organ morphogenesis	4.22E-03
39	GO:0010540: basipetal auxin transport	4.22E-03
40	GO:0048768: root hair cell tip growth	4.22E-03
41	GO:0048467: gynoecium development	4.22E-03
42	GO:0009933: meristem structural organization	4.22E-03
43	GO:0009825: multidimensional cell growth	4.57E-03
44	GO:0080188: RNA-directed DNA methylation	4.57E-03
45	GO:0042023: DNA endoreduplication	4.92E-03
46	GO:0006874: cellular calcium ion homeostasis	5.65E-03
47	GO:0003333: amino acid transmembrane transport	6.03E-03
48	GO:0006306: DNA methylation	6.03E-03
49	GO:0048443: stamen development	7.23E-03
50	GO:0009451: RNA modification	7.60E-03
51	GO:0000271: polysaccharide biosynthetic process	8.07E-03
52	GO:0009739: response to gibberellin	8.31E-03
53	GO:0009958: positive gravitropism	8.50E-03
54	GO:0045489: pectin biosynthetic process	8.50E-03
55	GO:0010305: leaf vascular tissue pattern formation	8.50E-03
56	GO:0009791: post-embryonic development	9.39E-03
57	GO:0002229: defense response to oomycetes	9.85E-03
58	GO:0031047: gene silencing by RNA	1.03E-02
59	GO:0009639: response to red or far red light	1.13E-02
60	GO:0010252: auxin homeostasis	1.13E-02
61	GO:0006468: protein phosphorylation	1.27E-02
62	GO:0006974: cellular response to DNA damage stimulus	1.38E-02
63	GO:0015995: chlorophyll biosynthetic process	1.43E-02
64	GO:0006865: amino acid transport	1.76E-02
65	GO:0016051: carbohydrate biosynthetic process	1.82E-02
66	GO:0008283: cell proliferation	2.18E-02
67	GO:0010114: response to red light	2.18E-02
68	GO:0009926: auxin polar transport	2.18E-02
69	GO:0009965: leaf morphogenesis	2.37E-02
70	GO:0006364: rRNA processing	2.70E-02
71	GO:0009734: auxin-activated signaling pathway	2.98E-02
72	GO:0048316: seed development	3.11E-02
73	GO:0009908: flower development	3.39E-02
74	GO:0009742: brassinosteroid mediated signaling pathway	3.62E-02
75	GO:0051301: cell division	4.08E-02

Rank	GO Term	Adjusted P value
1	GO:0098519: nucleotide phosphatase activity, acting on free nucleotides	0.00E+00
2	GO:0008805: carbon-monoxide oxygenase activity	2.32E-04
3	GO:0016707: gibberellin 3-beta-dioxygenase activity	3.86E-04
4	GO:0045544: gibberellin 20-oxidase activity	5.54E-04
5	GO:0010011: auxin binding	7.37E-04
6	GO:0010328: auxin influx transmembrane transporter activity	7.37E-04
7	GO:0043495: protein anchor	7.37E-04
8	GO:0004930: G-protein coupled receptor activity	7.37E-04
9	GO:0030332: cyclin binding	1.14E-03
10	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	1.14E-03
11	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	1.14E-03
12	GO:0004222: metalloendopeptidase activity	1.54E-03
13	GO:0004871: signal transducer activity	3.09E-03
14	GO:0004970: ionotropic glutamate receptor activity	4.57E-03
15	GO:0005217: intracellular ligand-gated ion channel activity	4.57E-03
16	GO:0008134: transcription factor binding	5.28E-03
17	GO:0033612: receptor serine/threonine kinase binding	6.03E-03
18	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	6.42E-03
19	GO:0005102: receptor binding	7.64E-03
20	GO:0010181: FMN binding	8.94E-03
21	GO:0008237: metallopeptidase activity	1.18E-02
22	GO:0004674: protein serine/threonine kinase activity	1.66E-02
23	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.94E-02
24	GO:0016301: kinase activity	2.24E-02
25	GO:0004519: endonuclease activity	2.30E-02
26	GO:0015293: symporter activity	2.37E-02
27	GO:0046983: protein dimerization activity	2.77E-02
28	GO:0004842: ubiquitin-protein transferase activity	2.89E-02
29	GO:0015171: amino acid transmembrane transporter activity	2.90E-02
30	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.11E-02
31	GO:0016758: transferase activity, transferring hexosyl groups	3.99E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000930: gamma-tubulin complex	7.37E-04
3	GO:0000922: spindle pole	2.37E-03
4	GO:0042644: chloroplast nucleoid	2.37E-03
5	GO:0055028: cortical microtubule	2.95E-03
6	GO:0005938: cell cortex	3.89E-03
7	GO:0000419: DNA-directed RNA polymerase V complex	4.92E-03
8	GO:0043234: protein complex	4.92E-03
9	GO:0016592: mediator complex	1.03E-02
10	GO:0071944: cell periphery	1.08E-02
11	GO:0009507: chloroplast	1.46E-02
12	GO:0090406: pollen tube	2.18E-02
13	GO:0005635: nuclear envelope	2.83E-02
14	GO:0005654: nucleoplasm	3.99E-02
15	GO:0005759: mitochondrial matrix	4.78E-02