co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
2	GO:0051553: flavone biosynthetic process	0.00E+00
3	GO:1904250: positive regulation of age-related resistance	0.00E+00
4	GO:0010398: xylogalacturonan metabolic process	0.00E+00
5	GO:0016102: diterpenoid biosynthetic process	0.00E+00
6	GO:0072722: response to amitrole	0.00E+00
7	GO:0006216: cytidine catabolic process	0.00E+00
8	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
9	GO:0090400: stress-induced premature senescence	0.00E+00
10	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
11	GO:0009407: toxin catabolic process	4.43E-05
12	GO:0006564: L-serine biosynthetic process	5.18E-05
13	GO:0010150: leaf senescence	9.61E-05
14	GO:0009617: response to bacterium	1.39E-04
15	GO:0071669: plant-type cell wall organization or biogenesis	1.40E-04
16	GO:1900057: positive regulation of leaf senescence	1.40E-04
17	GO:0006680: glucosylceramide catabolic process	2.11E-04
18	GO:0019567: arabinose biosynthetic process	2.11E-04
19	GO:0042964: thioredoxin reduction	2.11E-04
20	GO:0009620: response to fungus	2.48E-04
21	GO:0009651: response to salt stress	2.74E-04
22	GO:0051607: defense response to virus	3.02E-04
23	GO:0046686: response to cadmium ion	3.98E-04
24	GO:0051252: regulation of RNA metabolic process	4.71E-04
25	GO:0031204: posttranslational protein targeting to membrane, translocation	4.71E-04
26	GO:0050684: regulation of mRNA processing	4.71E-04
27	GO:1902000: homogentisate catabolic process	4.71E-04
28	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	4.71E-04
29	GO:0071398: cellular response to fatty acid	7.67E-04
30	GO:0010476: gibberellin mediated signaling pathway	7.67E-04
31	GO:0010325: raffinose family oligosaccharide biosynthetic process	7.67E-04
32	GO:0010272: response to silver ion	7.67E-04
33	GO:0009072: aromatic amino acid family metabolic process	7.67E-04
34	GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity	7.67E-04
35	GO:0002230: positive regulation of defense response to virus by host	7.67E-04
36	GO:0032784: regulation of DNA-templated transcription, elongation	7.67E-04
37	GO:0006556: S-adenosylmethionine biosynthetic process	7.67E-04
38	GO:0061158: 3'-UTR-mediated mRNA destabilization	7.67E-04
39	GO:0000162: tryptophan biosynthetic process	7.93E-04
40	GO:0042542: response to hydrogen peroxide	8.15E-04
41	GO:0016998: cell wall macromolecule catabolic process	1.05E-03
42	GO:1902290: positive regulation of defense response to oomycetes	1.09E-03
43	GO:0080024: indolebutyric acid metabolic process	1.09E-03
44	GO:0001676: long-chain fatty acid metabolic process	1.09E-03
45	GO:0000187: activation of MAPK activity	1.09E-03
46	GO:0070301: cellular response to hydrogen peroxide	1.09E-03
47	GO:0002239: response to oomycetes	1.09E-03
48	GO:0009693: ethylene biosynthetic process	1.25E-03
49	GO:0010188: response to microbial phytotoxin	1.45E-03
50	GO:0045227: capsule polysaccharide biosynthetic process	1.45E-03
51	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.45E-03
52	GO:0033358: UDP-L-arabinose biosynthetic process	1.45E-03
53	GO:0010600: regulation of auxin biosynthetic process	1.45E-03
54	GO:0033356: UDP-L-arabinose metabolic process	1.45E-03
55	GO:1901002: positive regulation of response to salt stress	1.45E-03
56	GO:0015867: ATP transport	1.45E-03
57	GO:0055114: oxidation-reduction process	1.48E-03
58	GO:0046283: anthocyanin-containing compound metabolic process	1.85E-03
59	GO:0000304: response to singlet oxygen	1.85E-03
60	GO:0010193: response to ozone	2.10E-03
61	GO:0009972: cytidine deamination	2.28E-03
62	GO:0015866: ADP transport	2.28E-03
63	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.28E-03
64	GO:0060918: auxin transport	2.28E-03
65	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.28E-03
66	GO:0009099: valine biosynthetic process	2.74E-03
67	GO:0080113: regulation of seed growth	2.74E-03
68	GO:0048444: floral organ morphogenesis	2.74E-03
69	GO:0030643: cellular phosphate ion homeostasis	2.74E-03
70	GO:0009082: branched-chain amino acid biosynthetic process	2.74E-03
71	GO:0009751: response to salicylic acid	3.20E-03
72	GO:1902074: response to salt	3.23E-03
73	GO:0080027: response to herbivore	3.23E-03
74	GO:0050829: defense response to Gram-negative bacterium	3.23E-03
75	GO:0006102: isocitrate metabolic process	3.74E-03
76	GO:0009819: drought recovery	3.74E-03
77	GO:0043068: positive regulation of programmed cell death	3.74E-03
78	GO:0008152: metabolic process	3.79E-03
79	GO:0022900: electron transport chain	4.29E-03
80	GO:0019430: removal of superoxide radicals	4.29E-03
81	GO:0010497: plasmodesmata-mediated intercellular transport	4.29E-03
82	GO:0009097: isoleucine biosynthetic process	4.29E-03
83	GO:0010043: response to zinc ion	4.55E-03
84	GO:0010112: regulation of systemic acquired resistance	4.85E-03
85	GO:0009056: catabolic process	4.85E-03
86	GO:0009835: fruit ripening	4.85E-03
87	GO:0046685: response to arsenic-containing substance	4.85E-03
88	GO:0006099: tricarboxylic acid cycle	5.21E-03
89	GO:1900426: positive regulation of defense response to bacterium	5.44E-03
90	GO:0009098: leucine biosynthetic process	5.44E-03
91	GO:2000280: regulation of root development	5.44E-03
92	GO:0050832: defense response to fungus	5.56E-03
93	GO:0006631: fatty acid metabolic process	5.93E-03
94	GO:0006032: chitin catabolic process	6.06E-03
95	GO:0042742: defense response to bacterium	6.65E-03
96	GO:0000272: polysaccharide catabolic process	6.69E-03
97	GO:0000209: protein polyubiquitination	6.69E-03
98	GO:0006415: translational termination	6.69E-03
99	GO:0006979: response to oxidative stress	6.75E-03
100	GO:0009636: response to toxic substance	7.22E-03
101	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	7.36E-03
102	GO:0031347: regulation of defense response	7.79E-03
103	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	7.79E-03
104	GO:0055046: microgametogenesis	8.04E-03
105	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	8.04E-03
106	GO:0010102: lateral root morphogenesis	8.04E-03
107	GO:0006807: nitrogen compound metabolic process	8.04E-03
108	GO:0009611: response to wounding	8.07E-03
109	GO:0002237: response to molecule of bacterial origin	8.75E-03
110	GO:0090351: seedling development	9.48E-03
111	GO:0009225: nucleotide-sugar metabolic process	9.48E-03
112	GO:0045454: cell redox homeostasis	1.12E-02
113	GO:0010073: meristem maintenance	1.18E-02
114	GO:0006874: cellular calcium ion homeostasis	1.18E-02
115	GO:0030245: cellulose catabolic process	1.34E-02
116	GO:0009814: defense response, incompatible interaction	1.34E-02
117	GO:0016226: iron-sulfur cluster assembly	1.34E-02
118	GO:0006730: one-carbon metabolic process	1.34E-02
119	GO:0030433: ubiquitin-dependent ERAD pathway	1.34E-02
120	GO:0010227: floral organ abscission	1.43E-02
121	GO:0006012: galactose metabolic process	1.43E-02
122	GO:0009561: megagametogenesis	1.52E-02
123	GO:0042147: retrograde transport, endosome to Golgi	1.61E-02
124	GO:0010051: xylem and phloem pattern formation	1.70E-02
125	GO:0042631: cellular response to water deprivation	1.70E-02
126	GO:0006662: glycerol ether metabolic process	1.79E-02
127	GO:0045489: pectin biosynthetic process	1.79E-02
128	GO:0048544: recognition of pollen	1.88E-02
129	GO:0006814: sodium ion transport	1.88E-02
130	GO:0009851: auxin biosynthetic process	1.98E-02
131	GO:0006623: protein targeting to vacuole	1.98E-02
132	GO:0010183: pollen tube guidance	1.98E-02
133	GO:0006891: intra-Golgi vesicle-mediated transport	2.08E-02
134	GO:0006635: fatty acid beta-oxidation	2.08E-02
135	GO:0002229: defense response to oomycetes	2.08E-02
136	GO:0000302: response to reactive oxygen species	2.08E-02
137	GO:0045490: pectin catabolic process	2.14E-02
138	GO:1901657: glycosyl compound metabolic process	2.28E-02
139	GO:0071281: cellular response to iron ion	2.28E-02
140	GO:0019760: glucosinolate metabolic process	2.38E-02
141	GO:0006464: cellular protein modification process	2.38E-02
142	GO:0010468: regulation of gene expression	2.56E-02
143	GO:0009615: response to virus	2.70E-02
144	GO:0010029: regulation of seed germination	2.81E-02
145	GO:0009627: systemic acquired resistance	2.92E-02
146	GO:0006888: ER to Golgi vesicle-mediated transport	3.04E-02
147	GO:0016311: dephosphorylation	3.15E-02
148	GO:0016049: cell growth	3.15E-02
149	GO:0015031: protein transport	3.21E-02
150	GO:0009817: defense response to fungus, incompatible interaction	3.27E-02
151	GO:0030244: cellulose biosynthetic process	3.27E-02
152	GO:0009813: flavonoid biosynthetic process	3.38E-02
153	GO:0010311: lateral root formation	3.38E-02
154	GO:0009832: plant-type cell wall biogenesis	3.38E-02
155	GO:0009409: response to cold	3.52E-02
156	GO:0006970: response to osmotic stress	3.57E-02
157	GO:0007568: aging	3.62E-02
158	GO:0048527: lateral root development	3.62E-02
159	GO:0009631: cold acclimation	3.62E-02
160	GO:0009723: response to ethylene	3.83E-02
161	GO:0034599: cellular response to oxidative stress	3.99E-02
162	GO:0006468: protein phosphorylation	4.09E-02
163	GO:0006839: mitochondrial transport	4.24E-02
164	GO:0051707: response to other organism	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
2	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
3	GO:0033759: flavone synthase activity	0.00E+00
4	GO:0051766: inositol trisphosphate kinase activity	0.00E+00
5	GO:0051670: inulinase activity	0.00E+00
6	GO:0080013: (E,E)-geranyllinalool synthase activity	0.00E+00
7	GO:0047844: deoxycytidine deaminase activity	0.00E+00
8	GO:0051765: inositol tetrakisphosphate kinase activity	0.00E+00
9	GO:0004364: glutathione transferase activity	8.64E-05
10	GO:0102391: decanoate--CoA ligase activity	1.06E-04
11	GO:0043295: glutathione binding	1.40E-04
12	GO:0004467: long-chain fatty acid-CoA ligase activity	1.40E-04
13	GO:0031219: levanase activity	2.11E-04
14	GO:2001147: camalexin binding	2.11E-04
15	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.11E-04
16	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	2.11E-04
17	GO:0016229: steroid dehydrogenase activity	2.11E-04
18	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	2.11E-04
19	GO:0010179: IAA-Ala conjugate hydrolase activity	2.11E-04
20	GO:2001227: quercitrin binding	2.11E-04
21	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.11E-04
22	GO:0000824: inositol tetrakisphosphate 3-kinase activity	2.11E-04
23	GO:0070401: NADP+ binding	2.11E-04
24	GO:0051669: fructan beta-fructosidase activity	2.11E-04
25	GO:0047326: inositol tetrakisphosphate 5-kinase activity	2.11E-04
26	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	2.11E-04
27	GO:0004348: glucosylceramidase activity	2.11E-04
28	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	4.71E-04
29	GO:0010331: gibberellin binding	4.71E-04
30	GO:0004617: phosphoglycerate dehydrogenase activity	4.71E-04
31	GO:0052691: UDP-arabinopyranose mutase activity	4.71E-04
32	GO:0008428: ribonuclease inhibitor activity	4.71E-04
33	GO:1990585: hydroxyproline O-arabinosyltransferase activity	4.71E-04
34	GO:0004049: anthranilate synthase activity	7.67E-04
35	GO:0004478: methionine adenosyltransferase activity	7.67E-04
36	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.09E-03
37	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.09E-03
38	GO:0052656: L-isoleucine transaminase activity	1.09E-03
39	GO:0052654: L-leucine transaminase activity	1.09E-03
40	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	1.09E-03
41	GO:0052655: L-valine transaminase activity	1.09E-03
42	GO:0004416: hydroxyacylglutathione hydrolase activity	1.09E-03
43	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.09E-03
44	GO:0005432: calcium:sodium antiporter activity	1.09E-03
45	GO:0016149: translation release factor activity, codon specific	1.09E-03
46	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.09E-03
47	GO:0004601: peroxidase activity	1.30E-03
48	GO:0050373: UDP-arabinose 4-epimerase activity	1.45E-03
49	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.45E-03
50	GO:0004084: branched-chain-amino-acid transaminase activity	1.45E-03
51	GO:0016866: intramolecular transferase activity	1.45E-03
52	GO:0004791: thioredoxin-disulfide reductase activity	1.83E-03
53	GO:0008948: oxaloacetate decarboxylase activity	1.85E-03
54	GO:0018685: alkane 1-monooxygenase activity	1.85E-03
55	GO:0015035: protein disulfide oxidoreductase activity	2.01E-03
56	GO:0035252: UDP-xylosyltransferase activity	2.28E-03
57	GO:0008200: ion channel inhibitor activity	2.28E-03
58	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.28E-03
59	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.28E-03
60	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.70E-03
61	GO:0008237: metallopeptidase activity	2.70E-03
62	GO:0005347: ATP transmembrane transporter activity	2.74E-03
63	GO:0015217: ADP transmembrane transporter activity	2.74E-03
64	GO:0004126: cytidine deaminase activity	2.74E-03
65	GO:0003978: UDP-glucose 4-epimerase activity	2.74E-03
66	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.23E-03
67	GO:0004806: triglyceride lipase activity	3.56E-03
68	GO:0015491: cation:cation antiporter activity	3.74E-03
69	GO:0004708: MAP kinase kinase activity	3.74E-03
70	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.74E-03
71	GO:0052747: sinapyl alcohol dehydrogenase activity	3.74E-03
72	GO:0004033: aldo-keto reductase (NADP) activity	3.74E-03
73	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.85E-03
74	GO:0003747: translation release factor activity	4.85E-03
75	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.99E-03
76	GO:0004568: chitinase activity	6.06E-03
77	GO:0008794: arsenate reductase (glutaredoxin) activity	6.69E-03
78	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.36E-03
79	GO:0031072: heat shock protein binding	8.04E-03
80	GO:0031624: ubiquitin conjugating enzyme binding	8.75E-03
81	GO:0004970: ionotropic glutamate receptor activity	9.48E-03
82	GO:0004867: serine-type endopeptidase inhibitor activity	9.48E-03
83	GO:0008061: chitin binding	9.48E-03
84	GO:0005217: intracellular ligand-gated ion channel activity	9.48E-03
85	GO:0051536: iron-sulfur cluster binding	1.10E-02
86	GO:0031418: L-ascorbic acid binding	1.10E-02
87	GO:0042803: protein homodimerization activity	1.18E-02
88	GO:0010333: terpene synthase activity	1.26E-02
89	GO:0008810: cellulase activity	1.43E-02
90	GO:0003727: single-stranded RNA binding	1.52E-02
91	GO:0047134: protein-disulfide reductase activity	1.61E-02
92	GO:0004674: protein serine/threonine kinase activity	1.63E-02
93	GO:0001085: RNA polymerase II transcription factor binding	1.79E-02
94	GO:0015297: antiporter activity	2.05E-02
95	GO:0016301: kinase activity	2.26E-02
96	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.28E-02
97	GO:0016791: phosphatase activity	2.38E-02
98	GO:0008194: UDP-glycosyltransferase activity	2.40E-02
99	GO:0008483: transaminase activity	2.49E-02
100	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.49E-02
101	GO:0003824: catalytic activity	2.59E-02
102	GO:0016597: amino acid binding	2.59E-02
103	GO:0102483: scopolin beta-glucosidase activity	3.04E-02
104	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.27E-02
105	GO:0030145: manganese ion binding	3.62E-02
106	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.62E-02
107	GO:0016740: transferase activity	3.83E-02
108	GO:0003993: acid phosphatase activity	3.99E-02
109	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.11E-02
110	GO:0008422: beta-glucosidase activity	4.11E-02
111	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.22E-02
112	GO:0051539: 4 iron, 4 sulfur cluster binding	4.24E-02
113	GO:0061630: ubiquitin protein ligase activity	4.32E-02
114	GO:0043565: sequence-specific DNA binding	4.33E-02
115	GO:0046872: metal ion binding	4.40E-02
116	GO:0005524: ATP binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
2	GO:0005784: Sec61 translocon complex	0.00E+00
3	GO:0005794: Golgi apparatus	6.01E-05
4	GO:0045252: oxoglutarate dehydrogenase complex	2.11E-04
5	GO:0005950: anthranilate synthase complex	4.71E-04
6	GO:0005886: plasma membrane	4.78E-04
7	GO:0005829: cytosol	2.15E-03
8	GO:0005788: endoplasmic reticulum lumen	3.20E-03
9	GO:0009986: cell surface	3.23E-03
10	GO:0005737: cytoplasm	3.88E-03
11	GO:0005779: integral component of peroxisomal membrane	4.29E-03
12	GO:0017119: Golgi transport complex	6.06E-03
13	GO:0005750: mitochondrial respiratory chain complex III	8.75E-03
14	GO:0005783: endoplasmic reticulum	1.40E-02
15	GO:0019898: extrinsic component of membrane	1.98E-02
16	GO:0016592: mediator complex	2.18E-02
17	GO:0071944: cell periphery	2.28E-02
18	GO:0032580: Golgi cisterna membrane	2.38E-02
19	GO:0005618: cell wall	2.72E-02
20	GO:0005667: transcription factor complex	2.92E-02
21	GO:0009570: chloroplast stroma	2.94E-02
22	GO:0000151: ubiquitin ligase complex	3.27E-02
23	GO:0000139: Golgi membrane	3.52E-02
24	GO:0005777: peroxisome	3.55E-02
25	GO:0005789: endoplasmic reticulum membrane	4.18E-02
26	GO:0090406: pollen tube	4.63E-02