co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
2	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
3	GO:0017038: protein import	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
6	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
7	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
8	GO:0002184: cytoplasmic translational termination	0.00E+00
9	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
10	GO:0018026: peptidyl-lysine monomethylation	3.29E-06
11	GO:0009658: chloroplast organization	7.43E-06
12	GO:2000012: regulation of auxin polar transport	4.22E-05
13	GO:0010020: chloroplast fission	5.12E-05
14	GO:0042793: transcription from plastid promoter	1.12E-04
15	GO:0048437: floral organ development	2.02E-04
16	GO:0010182: sugar mediated signaling pathway	2.34E-04
17	GO:0005980: glycogen catabolic process	2.68E-04
18	GO:0030198: extracellular matrix organization	2.68E-04
19	GO:0006438: valyl-tRNA aminoacylation	2.68E-04
20	GO:0070509: calcium ion import	2.68E-04
21	GO:0010442: guard cell morphogenesis	2.68E-04
22	GO:0010063: positive regulation of trichoblast fate specification	2.68E-04
23	GO:0010480: microsporocyte differentiation	2.68E-04
24	GO:0042759: long-chain fatty acid biosynthetic process	2.68E-04
25	GO:1902458: positive regulation of stomatal opening	2.68E-04
26	GO:0015904: tetracycline transport	2.68E-04
27	GO:0005991: trehalose metabolic process	2.68E-04
28	GO:0010027: thylakoid membrane organization	5.06E-04
29	GO:0009734: auxin-activated signaling pathway	5.82E-04
30	GO:0080175: phragmoplast microtubule organization	5.89E-04
31	GO:0071497: cellular response to freezing	5.89E-04
32	GO:0001682: tRNA 5'-leader removal	5.89E-04
33	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.89E-04
34	GO:2000123: positive regulation of stomatal complex development	5.89E-04
35	GO:0052541: plant-type cell wall cellulose metabolic process	5.89E-04
36	GO:1901529: positive regulation of anion channel activity	5.89E-04
37	GO:0005983: starch catabolic process	6.94E-04
38	GO:0009790: embryo development	8.79E-04
39	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	9.55E-04
40	GO:0030261: chromosome condensation	9.55E-04
41	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	9.55E-04
42	GO:0070588: calcium ion transmembrane transport	9.87E-04
43	GO:0006071: glycerol metabolic process	1.10E-03
44	GO:0009640: photomorphogenesis	1.31E-03
45	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.36E-03
46	GO:0046739: transport of virus in multicellular host	1.36E-03
47	GO:0043572: plastid fission	1.36E-03
48	GO:0010071: root meristem specification	1.36E-03
49	GO:0007231: osmosensory signaling pathway	1.36E-03
50	GO:0009102: biotin biosynthetic process	1.36E-03
51	GO:0033500: carbohydrate homeostasis	1.83E-03
52	GO:2000038: regulation of stomatal complex development	1.83E-03
53	GO:0007112: male meiosis cytokinesis	1.83E-03
54	GO:0006808: regulation of nitrogen utilization	1.83E-03
55	GO:1901141: regulation of lignin biosynthetic process	1.83E-03
56	GO:0010109: regulation of photosynthesis	1.83E-03
57	GO:0000914: phragmoplast assembly	1.83E-03
58	GO:0022622: root system development	1.83E-03
59	GO:0045038: protein import into chloroplast thylakoid membrane	2.33E-03
60	GO:0010375: stomatal complex patterning	2.33E-03
61	GO:0009793: embryo development ending in seed dormancy	2.38E-03
62	GO:0010305: leaf vascular tissue pattern formation	2.39E-03
63	GO:0019252: starch biosynthetic process	2.75E-03
64	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.88E-03
65	GO:0010405: arabinogalactan protein metabolic process	2.88E-03
66	GO:0016554: cytidine to uridine editing	2.88E-03
67	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.94E-03
68	GO:0009742: brassinosteroid mediated signaling pathway	3.21E-03
69	GO:0042372: phylloquinone biosynthetic process	3.46E-03
70	GO:2000033: regulation of seed dormancy process	3.46E-03
71	GO:0017148: negative regulation of translation	3.46E-03
72	GO:0030488: tRNA methylation	3.46E-03
73	GO:0010444: guard mother cell differentiation	4.08E-03
74	GO:0030307: positive regulation of cell growth	4.08E-03
75	GO:0032880: regulation of protein localization	4.08E-03
76	GO:0048528: post-embryonic root development	4.08E-03
77	GO:0001522: pseudouridine synthesis	4.73E-03
78	GO:0046620: regulation of organ growth	4.73E-03
79	GO:0070413: trehalose metabolism in response to stress	4.73E-03
80	GO:0006605: protein targeting	4.73E-03
81	GO:2000070: regulation of response to water deprivation	4.73E-03
82	GO:0000105: histidine biosynthetic process	4.73E-03
83	GO:0005978: glycogen biosynthetic process	4.73E-03
84	GO:0015995: chlorophyll biosynthetic process	5.00E-03
85	GO:0016042: lipid catabolic process	5.27E-03
86	GO:0007186: G-protein coupled receptor signaling pathway	5.42E-03
87	GO:0010497: plasmodesmata-mediated intercellular transport	5.42E-03
88	GO:0009657: plastid organization	5.42E-03
89	GO:0006526: arginine biosynthetic process	5.42E-03
90	GO:0032544: plastid translation	5.42E-03
91	GO:0015996: chlorophyll catabolic process	5.42E-03
92	GO:0040008: regulation of growth	5.64E-03
93	GO:0000160: phosphorelay signal transduction system	5.82E-03
94	GO:0048507: meristem development	6.14E-03
95	GO:0000902: cell morphogenesis	6.14E-03
96	GO:0009835: fruit ripening	6.14E-03
97	GO:0006865: amino acid transport	6.71E-03
98	GO:1900865: chloroplast RNA modification	6.90E-03
99	GO:0071577: zinc II ion transmembrane transport	6.90E-03
100	GO:0006779: porphyrin-containing compound biosynthetic process	6.90E-03
101	GO:0009098: leucine biosynthetic process	6.90E-03
102	GO:0006782: protoporphyrinogen IX biosynthetic process	7.68E-03
103	GO:0051026: chiasma assembly	7.68E-03
104	GO:0048829: root cap development	7.68E-03
105	GO:0045036: protein targeting to chloroplast	7.68E-03
106	GO:0006949: syncytium formation	7.68E-03
107	GO:0010162: seed dormancy process	7.68E-03
108	GO:0006631: fatty acid metabolic process	8.35E-03
109	GO:0009073: aromatic amino acid family biosynthetic process	8.50E-03
110	GO:0048229: gametophyte development	8.50E-03
111	GO:0006816: calcium ion transport	8.50E-03
112	GO:0045037: protein import into chloroplast stroma	9.35E-03
113	GO:0000266: mitochondrial fission	9.35E-03
114	GO:0030048: actin filament-based movement	1.02E-02
115	GO:0010102: lateral root morphogenesis	1.02E-02
116	GO:0050826: response to freezing	1.02E-02
117	GO:0055046: microgametogenesis	1.02E-02
118	GO:0010075: regulation of meristem growth	1.02E-02
119	GO:0010588: cotyledon vascular tissue pattern formation	1.02E-02
120	GO:0010207: photosystem II assembly	1.11E-02
121	GO:0009266: response to temperature stimulus	1.11E-02
122	GO:0009934: regulation of meristem structural organization	1.11E-02
123	GO:0080188: RNA-directed DNA methylation	1.21E-02
124	GO:0010030: positive regulation of seed germination	1.21E-02
125	GO:0009736: cytokinin-activated signaling pathway	1.22E-02
126	GO:0006508: proteolysis	1.25E-02
127	GO:0010025: wax biosynthetic process	1.30E-02
128	GO:0006833: water transport	1.30E-02
129	GO:0000162: tryptophan biosynthetic process	1.30E-02
130	GO:0080147: root hair cell development	1.40E-02
131	GO:0005992: trehalose biosynthetic process	1.40E-02
132	GO:0009733: response to auxin	1.48E-02
133	GO:0010026: trichome differentiation	1.50E-02
134	GO:0007017: microtubule-based process	1.50E-02
135	GO:0048367: shoot system development	1.50E-02
136	GO:0019953: sexual reproduction	1.50E-02
137	GO:0006418: tRNA aminoacylation for protein translation	1.50E-02
138	GO:0003333: amino acid transmembrane transport	1.61E-02
139	GO:0048511: rhythmic process	1.61E-02
140	GO:0009740: gibberellic acid mediated signaling pathway	1.64E-02
141	GO:0030245: cellulose catabolic process	1.71E-02
142	GO:0009693: ethylene biosynthetic process	1.82E-02
143	GO:0042127: regulation of cell proliferation	1.94E-02
144	GO:0008284: positive regulation of cell proliferation	2.05E-02
145	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.05E-02
146	GO:0008033: tRNA processing	2.17E-02
147	GO:0034220: ion transmembrane transport	2.17E-02
148	GO:0048653: anther development	2.17E-02
149	GO:0042631: cellular response to water deprivation	2.17E-02
150	GO:0009958: positive gravitropism	2.29E-02
151	GO:0006520: cellular amino acid metabolic process	2.29E-02
152	GO:0006662: glycerol ether metabolic process	2.29E-02
153	GO:0009741: response to brassinosteroid	2.29E-02
154	GO:0009058: biosynthetic process	2.31E-02
155	GO:0048364: root development	2.37E-02
156	GO:0007018: microtubule-based movement	2.41E-02
157	GO:0042752: regulation of circadian rhythm	2.41E-02
158	GO:0009646: response to absence of light	2.41E-02
159	GO:0005975: carbohydrate metabolic process	2.47E-02
160	GO:0010583: response to cyclopentenone	2.78E-02
161	GO:0071281: cellular response to iron ion	2.91E-02
162	GO:0010090: trichome morphogenesis	2.91E-02
163	GO:0009828: plant-type cell wall loosening	3.04E-02
164	GO:0007267: cell-cell signaling	3.18E-02
165	GO:0000910: cytokinesis	3.31E-02
166	GO:0007166: cell surface receptor signaling pathway	3.45E-02
167	GO:0071555: cell wall organization	3.73E-02
168	GO:0009817: defense response to fungus, incompatible interaction	4.17E-02
169	GO:0048481: plant ovule development	4.17E-02
170	GO:0030154: cell differentiation	4.22E-02
171	GO:0009832: plant-type cell wall biogenesis	4.32E-02
172	GO:0009813: flavonoid biosynthetic process	4.32E-02
173	GO:0009826: unidimensional cell growth	4.49E-02
174	GO:0048527: lateral root development	4.62E-02
175	GO:0009631: cold acclimation	4.62E-02
176	GO:0009910: negative regulation of flower development	4.62E-02
177	GO:0045087: innate immune response	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0051060: pullulanase activity	0.00E+00
2	GO:0047661: amino-acid racemase activity	0.00E+00
3	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
4	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
5	GO:0005201: extracellular matrix structural constituent	0.00E+00
6	GO:0004076: biotin synthase activity	0.00E+00
7	GO:0010303: limit dextrinase activity	0.00E+00
8	GO:0043023: ribosomal large subunit binding	2.67E-05
9	GO:0016279: protein-lysine N-methyltransferase activity	4.83E-05
10	GO:0004176: ATP-dependent peptidase activity	1.15E-04
11	GO:0050308: sugar-phosphatase activity	2.68E-04
12	GO:0004645: phosphorylase activity	2.68E-04
13	GO:0009374: biotin binding	2.68E-04
14	GO:0019203: carbohydrate phosphatase activity	2.68E-04
15	GO:0004832: valine-tRNA ligase activity	2.68E-04
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.68E-04
17	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.68E-04
18	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.68E-04
19	GO:0008184: glycogen phosphorylase activity	2.68E-04
20	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.80E-04
21	GO:0008237: metallopeptidase activity	4.36E-04
22	GO:0008493: tetracycline transporter activity	5.89E-04
23	GO:0003852: 2-isopropylmalate synthase activity	5.89E-04
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.89E-04
25	GO:0005262: calcium channel activity	7.86E-04
26	GO:0005504: fatty acid binding	9.55E-04
27	GO:0016805: dipeptidase activity	9.55E-04
28	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.55E-04
29	GO:0015462: ATPase-coupled protein transmembrane transporter activity	9.55E-04
30	GO:0004180: carboxypeptidase activity	9.55E-04
31	GO:0070330: aromatase activity	9.55E-04
32	GO:0017150: tRNA dihydrouridine synthase activity	9.55E-04
33	GO:0003924: GTPase activity	1.29E-03
34	GO:0016851: magnesium chelatase activity	1.36E-03
35	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.36E-03
36	GO:0045430: chalcone isomerase activity	1.83E-03
37	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.83E-03
38	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.83E-03
39	GO:0018685: alkane 1-monooxygenase activity	2.33E-03
40	GO:0003989: acetyl-CoA carboxylase activity	2.33E-03
41	GO:0005525: GTP binding	2.46E-03
42	GO:0004556: alpha-amylase activity	2.88E-03
43	GO:0016208: AMP binding	2.88E-03
44	GO:2001070: starch binding	2.88E-03
45	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.88E-03
46	GO:0004526: ribonuclease P activity	2.88E-03
47	GO:0000156: phosphorelay response regulator activity	3.35E-03
48	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.46E-03
49	GO:0030170: pyridoxal phosphate binding	4.53E-03
50	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	4.73E-03
51	GO:0008173: RNA methyltransferase activity	5.42E-03
52	GO:0004222: metalloendopeptidase activity	6.11E-03
53	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.14E-03
54	GO:0008017: microtubule binding	6.34E-03
55	GO:0046983: protein dimerization activity	6.55E-03
56	GO:0042802: identical protein binding	8.11E-03
57	GO:0005089: Rho guanyl-nucleotide exchange factor activity	8.50E-03
58	GO:0005198: structural molecule activity	1.02E-02
59	GO:0031072: heat shock protein binding	1.02E-02
60	GO:0009982: pseudouridine synthase activity	1.02E-02
61	GO:0008083: growth factor activity	1.11E-02
62	GO:0008266: poly(U) RNA binding	1.11E-02
63	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.11E-02
64	GO:0003774: motor activity	1.11E-02
65	GO:0015171: amino acid transmembrane transporter activity	1.36E-02
66	GO:0003777: microtubule motor activity	1.36E-02
67	GO:0005385: zinc ion transmembrane transporter activity	1.40E-02
68	GO:0008324: cation transmembrane transporter activity	1.50E-02
69	GO:0052689: carboxylic ester hydrolase activity	1.56E-02
70	GO:0004650: polygalacturonase activity	1.59E-02
71	GO:0033612: receptor serine/threonine kinase binding	1.61E-02
72	GO:0008810: cellulase activity	1.82E-02
73	GO:0003727: single-stranded RNA binding	1.94E-02
74	GO:0047134: protein-disulfide reductase activity	2.05E-02
75	GO:0004812: aminoacyl-tRNA ligase activity	2.05E-02
76	GO:0001085: RNA polymerase II transcription factor binding	2.29E-02
77	GO:0016829: lyase activity	2.37E-02
78	GO:0004791: thioredoxin-disulfide reductase activity	2.41E-02
79	GO:0019901: protein kinase binding	2.53E-02
80	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.82E-02
81	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.91E-02
82	GO:0051015: actin filament binding	2.91E-02
83	GO:0016791: phosphatase activity	3.04E-02
84	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.18E-02
85	GO:0005200: structural constituent of cytoskeleton	3.18E-02
86	GO:0008483: transaminase activity	3.18E-02
87	GO:0016597: amino acid binding	3.31E-02
88	GO:0015250: water channel activity	3.45E-02
89	GO:0016887: ATPase activity	3.87E-02
90	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.17E-02
91	GO:0015238: drug transmembrane transporter activity	4.32E-02
92	GO:0000287: magnesium ion binding	4.57E-02
93	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.62E-02
94	GO:0016788: hydrolase activity, acting on ester bonds	4.74E-02
95	GO:0003697: single-stranded DNA binding	4.93E-02
96	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0010170: glucose-1-phosphate adenylyltransferase complex	0.00E+00
2	GO:0009507: chloroplast	4.13E-08
3	GO:0009570: chloroplast stroma	4.23E-08
4	GO:0009941: chloroplast envelope	1.94E-05
5	GO:0009295: nucleoid	3.32E-05
6	GO:0009508: plastid chromosome	4.22E-05
7	GO:0000796: condensin complex	2.68E-04
8	GO:0046658: anchored component of plasma membrane	3.33E-04
9	GO:0009534: chloroplast thylakoid	3.47E-04
10	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.89E-04
11	GO:0009317: acetyl-CoA carboxylase complex	9.55E-04
12	GO:0009528: plastid inner membrane	9.55E-04
13	GO:0019897: extrinsic component of plasma membrane	9.55E-04
14	GO:0010007: magnesium chelatase complex	9.55E-04
15	GO:0009532: plastid stroma	1.46E-03
16	GO:0005886: plasma membrane	1.64E-03
17	GO:0009527: plastid outer membrane	1.83E-03
18	GO:0030286: dynein complex	1.83E-03
19	GO:0005655: nucleolar ribonuclease P complex	3.46E-03
20	GO:0010319: stromule	3.78E-03
21	GO:0009707: chloroplast outer membrane	5.54E-03
22	GO:0009536: plastid	5.55E-03
23	GO:0000418: DNA-directed RNA polymerase IV complex	7.68E-03
24	GO:0016459: myosin complex	7.68E-03
25	GO:0031225: anchored component of membrane	7.70E-03
26	GO:0090404: pollen tube tip	8.50E-03
27	GO:0005884: actin filament	8.50E-03
28	GO:0005874: microtubule	1.31E-02
29	GO:0031969: chloroplast membrane	1.37E-02
30	GO:0042651: thylakoid membrane	1.50E-02
31	GO:0009706: chloroplast inner membrane	1.75E-02
32	GO:0015629: actin cytoskeleton	1.82E-02
33	GO:0005871: kinesin complex	2.05E-02
34	GO:0005778: peroxisomal membrane	3.18E-02
35	GO:0005615: extracellular space	3.38E-02
36	GO:0030529: intracellular ribonucleoprotein complex	3.45E-02
37	GO:0005667: transcription factor complex	3.73E-02
38	GO:0009535: chloroplast thylakoid membrane	4.68E-02