Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G54140

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
2GO:2000378: negative regulation of reactive oxygen species metabolic process0.00E+00
3GO:0046865: terpenoid transport0.00E+00
4GO:0009312: oligosaccharide biosynthetic process0.00E+00
5GO:0006983: ER overload response0.00E+00
6GO:1902009: positive regulation of toxin transport0.00E+00
7GO:0051553: flavone biosynthetic process0.00E+00
8GO:0010055: atrichoblast differentiation0.00E+00
9GO:0006654: phosphatidic acid biosynthetic process0.00E+00
10GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
11GO:1902001: fatty acid transmembrane transport0.00E+00
12GO:1902289: negative regulation of defense response to oomycetes0.00E+00
13GO:0009751: response to salicylic acid2.69E-05
14GO:1900057: positive regulation of leaf senescence1.67E-04
15GO:0050691: regulation of defense response to virus by host2.36E-04
16GO:1990542: mitochondrial transmembrane transport2.36E-04
17GO:0032107: regulation of response to nutrient levels2.36E-04
18GO:1990641: response to iron ion starvation2.36E-04
19GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway3.78E-04
20GO:0015908: fatty acid transport5.24E-04
21GO:0006101: citrate metabolic process5.24E-04
22GO:0043066: negative regulation of apoptotic process5.24E-04
23GO:0015012: heparan sulfate proteoglycan biosynthetic process5.24E-04
24GO:0071668: plant-type cell wall assembly5.24E-04
25GO:0010155: regulation of proton transport5.24E-04
26GO:0080151: positive regulation of salicylic acid mediated signaling pathway5.24E-04
27GO:0009838: abscission5.24E-04
28GO:0006024: glycosaminoglycan biosynthetic process5.24E-04
29GO:0055088: lipid homeostasis5.24E-04
30GO:0042742: defense response to bacterium7.44E-04
31GO:0002237: response to molecule of bacterial origin7.46E-04
32GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway8.52E-04
33GO:0080163: regulation of protein serine/threonine phosphatase activity8.52E-04
34GO:0080168: abscisic acid transport8.52E-04
35GO:0071398: cellular response to fatty acid8.52E-04
36GO:0015783: GDP-fucose transport8.52E-04
37GO:0009410: response to xenobiotic stimulus8.52E-04
38GO:0015692: lead ion transport8.52E-04
39GO:0006631: fatty acid metabolic process9.48E-04
40GO:0080147: root hair cell development1.02E-03
41GO:0051707: response to other organism1.05E-03
42GO:0007166: cell surface receptor signaling pathway1.06E-03
43GO:0071323: cellular response to chitin1.21E-03
44GO:0080024: indolebutyric acid metabolic process1.21E-03
45GO:0055070: copper ion homeostasis1.21E-03
46GO:0001676: long-chain fatty acid metabolic process1.21E-03
47GO:0010116: positive regulation of abscisic acid biosynthetic process1.21E-03
48GO:0002239: response to oomycetes1.21E-03
49GO:0071456: cellular response to hypoxia1.35E-03
50GO:0006621: protein retention in ER lumen1.62E-03
51GO:0015867: ATP transport1.62E-03
52GO:0045088: regulation of innate immune response1.62E-03
53GO:0006097: glyoxylate cycle2.07E-03
54GO:0009229: thiamine diphosphate biosynthetic process2.07E-03
55GO:0009620: response to fungus2.12E-03
56GO:0010200: response to chitin2.44E-03
57GO:0002229: defense response to oomycetes2.47E-03
58GO:0010193: response to ozone2.47E-03
59GO:0009228: thiamine biosynthetic process2.55E-03
60GO:1900425: negative regulation of defense response to bacterium2.55E-03
61GO:0033365: protein localization to organelle2.55E-03
62GO:0009759: indole glucosinolate biosynthetic process2.55E-03
63GO:0015866: ADP transport2.55E-03
64GO:0010256: endomembrane system organization2.55E-03
65GO:0009861: jasmonic acid and ethylene-dependent systemic resistance3.06E-03
66GO:0000122: negative regulation of transcription from RNA polymerase II promoter3.61E-03
67GO:1902074: response to salt3.61E-03
68GO:0010044: response to aluminum ion3.61E-03
69GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway3.61E-03
70GO:0046470: phosphatidylcholine metabolic process3.61E-03
71GO:1900056: negative regulation of leaf senescence3.61E-03
72GO:0009816: defense response to bacterium, incompatible interaction3.76E-03
73GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.19E-03
74GO:0006605: protein targeting4.19E-03
75GO:0031540: regulation of anthocyanin biosynthetic process4.19E-03
76GO:0006102: isocitrate metabolic process4.19E-03
77GO:0009753: response to jasmonic acid4.66E-03
78GO:0010120: camalexin biosynthetic process4.79E-03
79GO:0006997: nucleus organization4.79E-03
80GO:0010204: defense response signaling pathway, resistance gene-independent4.79E-03
81GO:0010208: pollen wall assembly4.79E-03
82GO:0010112: regulation of systemic acquired resistance5.43E-03
83GO:0015780: nucleotide-sugar transport5.43E-03
84GO:0009835: fruit ripening5.43E-03
85GO:0007338: single fertilization5.43E-03
86GO:0045087: innate immune response5.87E-03
87GO:0009617: response to bacterium5.97E-03
88GO:0009086: methionine biosynthetic process6.09E-03
89GO:0008202: steroid metabolic process6.09E-03
90GO:0043067: regulation of programmed cell death6.09E-03
91GO:0006839: mitochondrial transport6.69E-03
92GO:0009870: defense response signaling pathway, resistance gene-dependent6.78E-03
93GO:0043069: negative regulation of programmed cell death6.78E-03
94GO:0010629: negative regulation of gene expression6.78E-03
95GO:0051555: flavonol biosynthetic process6.78E-03
96GO:0019684: photosynthesis, light reaction7.50E-03
97GO:0009089: lysine biosynthetic process via diaminopimelate7.50E-03
98GO:0009684: indoleacetic acid biosynthetic process7.50E-03
99GO:0000038: very long-chain fatty acid metabolic process7.50E-03
100GO:0045037: protein import into chloroplast stroma8.25E-03
101GO:0000266: mitochondrial fission8.25E-03
102GO:0009636: response to toxic substance8.51E-03
103GO:0006855: drug transmembrane transport8.84E-03
104GO:2000012: regulation of auxin polar transport9.02E-03
105GO:0031347: regulation of defense response9.17E-03
106GO:0009723: response to ethylene1.00E-02
107GO:0090351: seedling development1.06E-02
108GO:0000162: tryptophan biosynthetic process1.15E-02
109GO:0000027: ribosomal large subunit assembly1.24E-02
110GO:0009863: salicylic acid mediated signaling pathway1.24E-02
111GO:0030150: protein import into mitochondrial matrix1.24E-02
112GO:0006289: nucleotide-excision repair1.24E-02
113GO:0015031: protein transport1.34E-02
114GO:0006334: nucleosome assembly1.42E-02
115GO:0009269: response to desiccation1.42E-02
116GO:0009814: defense response, incompatible interaction1.51E-02
117GO:0016226: iron-sulfur cluster assembly1.51E-02
118GO:0031348: negative regulation of defense response1.51E-02
119GO:0009693: ethylene biosynthetic process1.61E-02
120GO:0006012: galactose metabolic process1.61E-02
121GO:0006810: transport1.72E-02
122GO:0006520: cellular amino acid metabolic process2.01E-02
123GO:0048544: recognition of pollen2.12E-02
124GO:0071554: cell wall organization or biogenesis2.34E-02
125GO:0006635: fatty acid beta-oxidation2.34E-02
126GO:0032502: developmental process2.45E-02
127GO:0010150: leaf senescence2.53E-02
128GO:0030163: protein catabolic process2.56E-02
129GO:0009567: double fertilization forming a zygote and endosperm2.68E-02
130GO:0051607: defense response to virus2.92E-02
131GO:0008380: RNA splicing3.02E-02
132GO:0010029: regulation of seed germination3.16E-02
133GO:0009737: response to abscisic acid3.22E-02
134GO:0009627: systemic acquired resistance3.29E-02
135GO:0009611: response to wounding3.77E-02
136GO:0009813: flavonoid biosynthetic process3.80E-02
137GO:0009407: toxin catabolic process3.93E-02
138GO:0048527: lateral root development4.07E-02
139GO:0006970: response to osmotic stress4.20E-02
140GO:0000724: double-strand break repair via homologous recombination4.20E-02
141GO:0009867: jasmonic acid mediated signaling pathway4.34E-02
142GO:0009637: response to blue light4.34E-02
143GO:0009853: photorespiration4.34E-02
144GO:0006099: tricarboxylic acid cycle4.48E-02
RankGO TermAdjusted P value
1GO:0050334: thiaminase activity0.00E+00
2GO:0005046: KDEL sequence binding0.00E+00
3GO:0034338: short-chain carboxylesterase activity0.00E+00
4GO:0033759: flavone synthase activity0.00E+00
5GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
6GO:0102391: decanoate--CoA ligase activity1.27E-04
7GO:0004467: long-chain fatty acid-CoA ligase activity1.67E-04
8GO:0047150: betaine-homocysteine S-methyltransferase activity2.36E-04
9GO:0015245: fatty acid transporter activity2.36E-04
10GO:0010285: L,L-diaminopimelate aminotransferase activity2.36E-04
11GO:0016920: pyroglutamyl-peptidase activity2.36E-04
12GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity2.63E-04
13GO:0004630: phospholipase D activity2.63E-04
14GO:0032934: sterol binding5.24E-04
15GO:0050736: O-malonyltransferase activity5.24E-04
16GO:0015036: disulfide oxidoreductase activity5.24E-04
17GO:0003994: aconitate hydratase activity5.24E-04
18GO:0032403: protein complex binding8.52E-04
19GO:0005457: GDP-fucose transmembrane transporter activity8.52E-04
20GO:0004324: ferredoxin-NADP+ reductase activity8.52E-04
21GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity8.52E-04
22GO:0016740: transferase activity9.58E-04
23GO:0001046: core promoter sequence-specific DNA binding1.02E-03
24GO:0031418: L-ascorbic acid binding1.02E-03
25GO:0035529: NADH pyrophosphatase activity1.21E-03
26GO:0017077: oxidative phosphorylation uncoupler activity1.21E-03
27GO:0004834: tryptophan synthase activity1.62E-03
28GO:0046923: ER retention sequence binding1.62E-03
29GO:0004623: phospholipase A2 activity2.07E-03
30GO:0005496: steroid binding2.07E-03
31GO:0047631: ADP-ribose diphosphatase activity2.07E-03
32GO:0000210: NAD+ diphosphatase activity2.55E-03
33GO:0003978: UDP-glucose 4-epimerase activity3.06E-03
34GO:0005347: ATP transmembrane transporter activity3.06E-03
35GO:0004656: procollagen-proline 4-dioxygenase activity3.06E-03
36GO:0015217: ADP transmembrane transporter activity3.06E-03
37GO:0008483: transaminase activity3.17E-03
38GO:0047893: flavonol 3-O-glucosyltransferase activity4.19E-03
39GO:0052747: sinapyl alcohol dehydrogenase activity4.19E-03
40GO:0004714: transmembrane receptor protein tyrosine kinase activity4.19E-03
41GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.36E-03
42GO:0015297: antiporter activity4.49E-03
43GO:0008142: oxysterol binding4.79E-03
44GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity5.43E-03
45GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors5.87E-03
46GO:0051539: 4 iron, 4 sulfur cluster binding6.69E-03
47GO:0004864: protein phosphatase inhibitor activity6.78E-03
48GO:0045551: cinnamyl-alcohol dehydrogenase activity8.25E-03
49GO:0008061: chitin binding1.06E-02
50GO:0003712: transcription cofactor activity1.06E-02
51GO:0051536: iron-sulfur cluster binding1.24E-02
52GO:0035251: UDP-glucosyltransferase activity1.42E-02
53GO:0042803: protein homodimerization activity1.46E-02
54GO:0004499: N,N-dimethylaniline monooxygenase activity1.70E-02
55GO:0030170: pyridoxal phosphate binding2.03E-02
56GO:0003700: transcription factor activity, sequence-specific DNA binding2.15E-02
57GO:0004872: receptor activity2.23E-02
58GO:0004674: protein serine/threonine kinase activity2.30E-02
59GO:0005509: calcium ion binding2.55E-02
60GO:0016757: transferase activity, transferring glycosyl groups2.78E-02
61GO:0008194: UDP-glycosyltransferase activity2.83E-02
62GO:0016413: O-acetyltransferase activity2.92E-02
63GO:0005515: protein binding2.94E-02
64GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.21E-02
65GO:0042802: identical protein binding3.21E-02
66GO:0008375: acetylglucosaminyltransferase activity3.29E-02
67GO:0005215: transporter activity3.33E-02
68GO:0030247: polysaccharide binding3.41E-02
69GO:0008168: methyltransferase activity3.76E-02
70GO:0015238: drug transmembrane transporter activity3.80E-02
71GO:0003682: chromatin binding4.12E-02
72GO:0046983: protein dimerization activity4.37E-02
73GO:0004712: protein serine/threonine/tyrosine kinase activity4.62E-02
74GO:0050661: NADP binding4.76E-02
75GO:0004497: monooxygenase activity4.82E-02
76GO:0004672: protein kinase activity5.00E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane6.25E-06
2GO:0005794: Golgi apparatus4.77E-05
3GO:0005743: mitochondrial inner membrane1.63E-04
4GO:0031314: extrinsic component of mitochondrial inner membrane5.24E-04
5GO:0030658: transport vesicle membrane1.21E-03
6GO:0009898: cytoplasmic side of plasma membrane1.62E-03
7GO:0005802: trans-Golgi network1.64E-03
8GO:0000813: ESCRT I complex2.07E-03
9GO:0000164: protein phosphatase type 1 complex2.07E-03
10GO:0005801: cis-Golgi network3.06E-03
11GO:0005779: integral component of peroxisomal membrane4.79E-03
12GO:0005789: endoplasmic reticulum membrane5.99E-03
13GO:0005768: endosome7.38E-03
14GO:0005795: Golgi stack1.06E-02
15GO:0005635: nuclear envelope1.10E-02
16GO:0005741: mitochondrial outer membrane1.42E-02
17GO:0009706: chloroplast inner membrane1.46E-02
18GO:0031410: cytoplasmic vesicle1.51E-02
19GO:0005744: mitochondrial inner membrane presequence translocase complex1.70E-02
20GO:0005623: cell1.88E-02
21GO:0005783: endoplasmic reticulum2.04E-02
22GO:0009504: cell plate2.23E-02
23GO:0031965: nuclear membrane2.23E-02
24GO:0019898: extrinsic component of membrane2.23E-02
25GO:0005774: vacuolar membrane2.88E-02
26GO:0000325: plant-type vacuole4.07E-02
27GO:0005777: peroxisome4.34E-02
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Gene type



Gene DE type