Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G53900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010081: regulation of inflorescence meristem growth0.00E+00
2GO:0009583: detection of light stimulus0.00E+00
3GO:0071000: response to magnetism0.00E+00
4GO:0006573: valine metabolic process0.00E+00
5GO:0000372: Group I intron splicing0.00E+00
6GO:0006114: glycerol biosynthetic process0.00E+00
7GO:0033528: S-methylmethionine cycle0.00E+00
8GO:1905177: tracheary element differentiation0.00E+00
9GO:0070979: protein K11-linked ubiquitination0.00E+00
10GO:0000373: Group II intron splicing4.81E-07
11GO:0051510: regulation of unidimensional cell growth3.37E-04
12GO:0009090: homoserine biosynthetic process3.75E-04
13GO:0051382: kinetochore assembly3.75E-04
14GO:1902025: nitrate import3.75E-04
15GO:0000012: single strand break repair3.75E-04
16GO:0043266: regulation of potassium ion transport3.75E-04
17GO:0010080: regulation of floral meristem growth3.75E-04
18GO:0006551: leucine metabolic process3.75E-04
19GO:0072387: flavin adenine dinucleotide metabolic process3.75E-04
20GO:0043087: regulation of GTPase activity3.75E-04
21GO:2000021: regulation of ion homeostasis3.75E-04
22GO:0006436: tryptophanyl-tRNA aminoacylation3.75E-04
23GO:0070574: cadmium ion transmembrane transport3.75E-04
24GO:0090548: response to nitrate starvation3.75E-04
25GO:0000066: mitochondrial ornithine transport3.75E-04
26GO:0034757: negative regulation of iron ion transport3.75E-04
27GO:0009657: plastid organization5.17E-04
28GO:0009086: methionine biosynthetic process7.31E-04
29GO:1901529: positive regulation of anion channel activity8.15E-04
30GO:1900871: chloroplast mRNA modification8.15E-04
31GO:0010617: circadian regulation of calcium ion oscillation8.15E-04
32GO:0006435: threonyl-tRNA aminoacylation8.15E-04
33GO:0010271: regulation of chlorophyll catabolic process8.15E-04
34GO:0099402: plant organ development8.15E-04
35GO:0031297: replication fork processing8.15E-04
36GO:0010343: singlet oxygen-mediated programmed cell death8.15E-04
37GO:0010582: floral meristem determinacy1.12E-03
38GO:0006094: gluconeogenesis1.27E-03
39GO:1902448: positive regulation of shade avoidance1.32E-03
40GO:0080117: secondary growth1.32E-03
41GO:0010022: meristem determinacy1.32E-03
42GO:0031145: anaphase-promoting complex-dependent catabolic process1.32E-03
43GO:1901672: positive regulation of systemic acquired resistance1.32E-03
44GO:0010623: programmed cell death involved in cell development1.32E-03
45GO:0030029: actin filament-based process1.32E-03
46GO:0051639: actin filament network formation1.91E-03
47GO:0034059: response to anoxia1.91E-03
48GO:0010239: chloroplast mRNA processing1.91E-03
49GO:0009800: cinnamic acid biosynthetic process1.91E-03
50GO:0042989: sequestering of actin monomers1.91E-03
51GO:1901332: negative regulation of lateral root development1.91E-03
52GO:1990019: protein storage vacuole organization1.91E-03
53GO:0046836: glycolipid transport1.91E-03
54GO:0009067: aspartate family amino acid biosynthetic process1.91E-03
55GO:0051513: regulation of monopolar cell growth1.91E-03
56GO:0030071: regulation of mitotic metaphase/anaphase transition1.91E-03
57GO:0005992: trehalose biosynthetic process1.97E-03
58GO:0051764: actin crosslink formation2.56E-03
59GO:0048442: sepal development2.56E-03
60GO:0051322: anaphase2.56E-03
61GO:0010508: positive regulation of autophagy2.56E-03
62GO:0008295: spermidine biosynthetic process2.56E-03
63GO:1902347: response to strigolactone2.56E-03
64GO:0009793: embryo development ending in seed dormancy3.01E-03
65GO:0010158: abaxial cell fate specification3.28E-03
66GO:0032876: negative regulation of DNA endoreduplication3.28E-03
67GO:0080110: sporopollenin biosynthetic process3.28E-03
68GO:0016131: brassinosteroid metabolic process3.28E-03
69GO:0030041: actin filament polymerization3.28E-03
70GO:0010117: photoprotection3.28E-03
71GO:0046283: anthocyanin-containing compound metabolic process3.28E-03
72GO:0045038: protein import into chloroplast thylakoid membrane3.28E-03
73GO:0016123: xanthophyll biosynthetic process3.28E-03
74GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.37E-03
75GO:0010087: phloem or xylem histogenesis3.64E-03
76GO:0010268: brassinosteroid homeostasis3.92E-03
77GO:0045489: pectin biosynthetic process3.92E-03
78GO:0046323: glucose import3.92E-03
79GO:0060918: auxin transport4.05E-03
80GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.05E-03
81GO:0048831: regulation of shoot system development4.05E-03
82GO:1901371: regulation of leaf morphogenesis4.05E-03
83GO:0006559: L-phenylalanine catabolic process4.05E-03
84GO:0010190: cytochrome b6f complex assembly4.05E-03
85GO:0007059: chromosome segregation4.22E-03
86GO:0000302: response to reactive oxygen species4.84E-03
87GO:0042372: phylloquinone biosynthetic process4.88E-03
88GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.88E-03
89GO:0010076: maintenance of floral meristem identity4.88E-03
90GO:0009082: branched-chain amino acid biosynthetic process4.88E-03
91GO:0048509: regulation of meristem development4.88E-03
92GO:0009099: valine biosynthetic process4.88E-03
93GO:0009088: threonine biosynthetic process4.88E-03
94GO:0009648: photoperiodism4.88E-03
95GO:0010310: regulation of hydrogen peroxide metabolic process4.88E-03
96GO:0007264: small GTPase mediated signal transduction5.18E-03
97GO:0010050: vegetative phase change5.77E-03
98GO:0000712: resolution of meiotic recombination intermediates5.77E-03
99GO:0006955: immune response5.77E-03
100GO:0048564: photosystem I assembly6.70E-03
101GO:0009850: auxin metabolic process6.70E-03
102GO:0070413: trehalose metabolism in response to stress6.70E-03
103GO:0006875: cellular metal ion homeostasis6.70E-03
104GO:0032875: regulation of DNA endoreduplication6.70E-03
105GO:0010029: regulation of seed germination7.42E-03
106GO:0007129: synapsis7.69E-03
107GO:0071482: cellular response to light stimulus7.69E-03
108GO:0009827: plant-type cell wall modification7.69E-03
109GO:0009097: isoleucine biosynthetic process7.69E-03
110GO:0009845: seed germination8.33E-03
111GO:0009416: response to light stimulus8.57E-03
112GO:0006098: pentose-phosphate shunt8.73E-03
113GO:0090305: nucleic acid phosphodiester bond hydrolysis8.73E-03
114GO:0010206: photosystem II repair8.73E-03
115GO:0000160: phosphorelay signal transduction system9.64E-03
116GO:0009638: phototropism9.82E-03
117GO:0010018: far-red light signaling pathway9.82E-03
118GO:0016571: histone methylation9.82E-03
119GO:0016573: histone acetylation9.82E-03
120GO:1900426: positive regulation of defense response to bacterium9.82E-03
121GO:0048441: petal development1.10E-02
122GO:0006535: cysteine biosynthetic process from serine1.10E-02
123GO:0006259: DNA metabolic process1.10E-02
124GO:0009451: RNA modification1.17E-02
125GO:0006265: DNA topological change1.21E-02
126GO:0009089: lysine biosynthetic process via diaminopimelate1.21E-02
127GO:0006415: translational termination1.21E-02
128GO:0006631: fatty acid metabolic process1.39E-02
129GO:0009785: blue light signaling pathway1.46E-02
130GO:0010075: regulation of meristem growth1.46E-02
131GO:0008283: cell proliferation1.51E-02
132GO:0042546: cell wall biogenesis1.57E-02
133GO:0048440: carpel development1.59E-02
134GO:0010207: photosystem II assembly1.59E-02
135GO:0010020: chloroplast fission1.59E-02
136GO:0009266: response to temperature stimulus1.59E-02
137GO:0006302: double-strand break repair1.59E-02
138GO:0009644: response to high light intensity1.63E-02
139GO:0009636: response to toxic substance1.69E-02
140GO:0090351: seedling development1.73E-02
141GO:0042753: positive regulation of circadian rhythm1.87E-02
142GO:0006863: purine nucleobase transport1.87E-02
143GO:0030150: protein import into mitochondrial matrix2.01E-02
144GO:0006338: chromatin remodeling2.01E-02
145GO:0007010: cytoskeleton organization2.01E-02
146GO:0051017: actin filament bundle assembly2.01E-02
147GO:0006289: nucleotide-excision repair2.01E-02
148GO:2000377: regulation of reactive oxygen species metabolic process2.01E-02
149GO:0019344: cysteine biosynthetic process2.01E-02
150GO:0009736: cytokinin-activated signaling pathway2.03E-02
151GO:0006418: tRNA aminoacylation for protein translation2.15E-02
152GO:0006970: response to osmotic stress2.17E-02
153GO:0016998: cell wall macromolecule catabolic process2.30E-02
154GO:0010431: seed maturation2.30E-02
155GO:0035428: hexose transmembrane transport2.46E-02
156GO:0031348: negative regulation of defense response2.46E-02
157GO:0048316: seed development2.48E-02
158GO:0071215: cellular response to abscisic acid stimulus2.62E-02
159GO:0006952: defense response2.63E-02
160GO:0010584: pollen exine formation2.78E-02
161GO:0048443: stamen development2.78E-02
162GO:0019722: calcium-mediated signaling2.78E-02
163GO:0010089: xylem development2.78E-02
164GO:0016117: carotenoid biosynthetic process2.94E-02
165GO:0070417: cellular response to cold2.94E-02
166GO:0010118: stomatal movement3.11E-02
167GO:0055114: oxidation-reduction process3.27E-02
168GO:0009958: positive gravitropism3.28E-02
169GO:0006520: cellular amino acid metabolic process3.28E-02
170GO:0009741: response to brassinosteroid3.28E-02
171GO:0048544: recognition of pollen3.45E-02
172GO:0042752: regulation of circadian rhythm3.45E-02
173GO:0009646: response to absence of light3.45E-02
174GO:0055072: iron ion homeostasis3.63E-02
175GO:0016132: brassinosteroid biosynthetic process3.81E-02
176GO:0032259: methylation3.98E-02
177GO:0010583: response to cyclopentenone3.99E-02
178GO:0016032: viral process3.99E-02
179GO:0019761: glucosinolate biosynthetic process3.99E-02
180GO:0006281: DNA repair4.20E-02
181GO:0016125: sterol metabolic process4.36E-02
182GO:0009639: response to red or far red light4.36E-02
183GO:0007267: cell-cell signaling4.55E-02
184GO:0000910: cytokinesis4.75E-02
185GO:0016126: sterol biosynthetic process4.94E-02
186GO:0001666: response to hypoxia4.94E-02
RankGO TermAdjusted P value
1GO:0000121: glycerol-1-phosphatase activity0.00E+00
2GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
3GO:0019144: ADP-sugar diphosphatase activity0.00E+00
4GO:0050613: delta14-sterol reductase activity0.00E+00
5GO:0043136: glycerol-3-phosphatase activity0.00E+00
6GO:0004451: isocitrate lyase activity3.75E-04
7GO:0042834: peptidoglycan binding3.75E-04
8GO:0080042: ADP-glucose pyrophosphohydrolase activity3.75E-04
9GO:0005290: L-histidine transmembrane transporter activity3.75E-04
10GO:0003984: acetolactate synthase activity3.75E-04
11GO:0008395: steroid hydroxylase activity3.75E-04
12GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity3.75E-04
13GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.75E-04
14GO:0004830: tryptophan-tRNA ligase activity3.75E-04
15GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity3.75E-04
16GO:0043022: ribosome binding4.22E-04
17GO:0004518: nuclease activity6.47E-04
18GO:0000064: L-ornithine transmembrane transporter activity8.15E-04
19GO:0004412: homoserine dehydrogenase activity8.15E-04
20GO:0004829: threonine-tRNA ligase activity8.15E-04
21GO:0050736: O-malonyltransferase activity8.15E-04
22GO:0009884: cytokinin receptor activity8.15E-04
23GO:0048531: beta-1,3-galactosyltransferase activity8.15E-04
24GO:0050017: L-3-cyanoalanine synthase activity8.15E-04
25GO:0080041: ADP-ribose pyrophosphohydrolase activity8.15E-04
26GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity8.15E-04
27GO:0004766: spermidine synthase activity8.15E-04
28GO:0004805: trehalose-phosphatase activity8.52E-04
29GO:0045548: phenylalanine ammonia-lyase activity1.32E-03
30GO:0004148: dihydrolipoyl dehydrogenase activity1.32E-03
31GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.32E-03
32GO:0005034: osmosensor activity1.32E-03
33GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.43E-03
34GO:0004072: aspartate kinase activity1.91E-03
35GO:0005354: galactose transmembrane transporter activity1.91E-03
36GO:0015181: arginine transmembrane transporter activity1.91E-03
37GO:0015086: cadmium ion transmembrane transporter activity1.91E-03
38GO:0016149: translation release factor activity, codon specific1.91E-03
39GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.91E-03
40GO:0017172: cysteine dioxygenase activity1.91E-03
41GO:0009882: blue light photoreceptor activity1.91E-03
42GO:0004300: enoyl-CoA hydratase activity1.91E-03
43GO:0001872: (1->3)-beta-D-glucan binding1.91E-03
44GO:0015189: L-lysine transmembrane transporter activity1.91E-03
45GO:0017089: glycolipid transporter activity1.91E-03
46GO:0070628: proteasome binding2.56E-03
47GO:0052793: pectin acetylesterase activity2.56E-03
48GO:0042277: peptide binding2.56E-03
49GO:0051861: glycolipid binding2.56E-03
50GO:0003924: GTPase activity3.14E-03
51GO:0003785: actin monomer binding3.28E-03
52GO:0042802: identical protein binding3.50E-03
53GO:0003690: double-stranded DNA binding3.77E-03
54GO:0004332: fructose-bisphosphate aldolase activity4.05E-03
55GO:0031593: polyubiquitin binding4.05E-03
56GO:0004130: cytochrome-c peroxidase activity4.05E-03
57GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity4.05E-03
58GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity4.05E-03
59GO:0016688: L-ascorbate peroxidase activity4.05E-03
60GO:0005355: glucose transmembrane transporter activity4.22E-03
61GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.34E-03
62GO:0004656: procollagen-proline 4-dioxygenase activity4.88E-03
63GO:0019900: kinase binding4.88E-03
64GO:0004124: cysteine synthase activity4.88E-03
65GO:0015103: inorganic anion transmembrane transporter activity5.77E-03
66GO:0016597: amino acid binding6.62E-03
67GO:0005525: GTP binding6.68E-03
68GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity7.69E-03
69GO:0071949: FAD binding8.73E-03
70GO:0003747: translation release factor activity8.73E-03
71GO:0015144: carbohydrate transmembrane transporter activity9.47E-03
72GO:0005096: GTPase activator activity9.64E-03
73GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.04E-02
74GO:0004673: protein histidine kinase activity1.10E-02
75GO:0005351: sugar:proton symporter activity1.10E-02
76GO:0005089: Rho guanyl-nucleotide exchange factor activity1.21E-02
77GO:0015266: protein channel activity1.46E-02
78GO:0008081: phosphoric diester hydrolase activity1.46E-02
79GO:0000155: phosphorelay sensor kinase activity1.46E-02
80GO:0016787: hydrolase activity1.71E-02
81GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.87E-02
82GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.87E-02
83GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.87E-02
84GO:0043130: ubiquitin binding2.01E-02
85GO:0031418: L-ascorbic acid binding2.01E-02
86GO:0043424: protein histidine kinase binding2.15E-02
87GO:0005345: purine nucleobase transmembrane transporter activity2.15E-02
88GO:0003723: RNA binding2.88E-02
89GO:0004812: aminoacyl-tRNA ligase activity2.94E-02
90GO:0008536: Ran GTPase binding3.28E-02
91GO:0004527: exonuclease activity3.28E-02
92GO:0046873: metal ion transmembrane transporter activity3.28E-02
93GO:0050662: coenzyme binding3.45E-02
94GO:0010181: FMN binding3.45E-02
95GO:0019901: protein kinase binding3.63E-02
96GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.72E-02
97GO:0048038: quinone binding3.81E-02
98GO:0016762: xyloglucan:xyloglucosyl transferase activity3.81E-02
99GO:0030170: pyridoxal phosphate binding4.02E-02
100GO:0000156: phosphorelay response regulator activity4.17E-02
101GO:0051015: actin filament binding4.17E-02
102GO:0003684: damaged DNA binding4.36E-02
103GO:0016791: phosphatase activity4.36E-02
104GO:0005200: structural constituent of cytoskeleton4.55E-02
105GO:0004519: endonuclease activity4.66E-02
106GO:0016413: O-acetyltransferase activity4.75E-02
107GO:0051213: dioxygenase activity4.94E-02
RankGO TermAdjusted P value
1GO:0009537: proplastid0.00E+00
2GO:0005948: acetolactate synthase complex0.00E+00
3GO:0035452: extrinsic component of plastid membrane0.00E+00
4GO:0009507: chloroplast1.38E-07
5GO:0009570: chloroplast stroma2.77E-04
6GO:0043240: Fanconi anaemia nuclear complex3.75E-04
7GO:0071821: FANCM-MHF complex3.75E-04
8GO:0016604: nuclear body7.31E-04
9GO:0009513: etioplast8.15E-04
10GO:0080085: signal recognition particle, chloroplast targeting8.15E-04
11GO:0046658: anchored component of plasma membrane8.24E-04
12GO:0009574: preprophase band1.27E-03
13GO:0009509: chromoplast1.32E-03
14GO:0016605: PML body1.32E-03
15GO:0032432: actin filament bundle1.91E-03
16GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.56E-03
17GO:0009535: chloroplast thylakoid membrane2.77E-03
18GO:0031305: integral component of mitochondrial inner membrane6.70E-03
19GO:0009501: amyloplast6.70E-03
20GO:0030529: intracellular ribonucleoprotein complex7.02E-03
21GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.69E-03
22GO:0005680: anaphase-promoting complex8.73E-03
23GO:0005884: actin filament1.21E-02
24GO:0000311: plastid large ribosomal subunit1.34E-02
25GO:0005938: cell cortex1.46E-02
26GO:0030176: integral component of endoplasmic reticulum membrane1.73E-02
27GO:0031225: anchored component of membrane1.85E-02
28GO:0042651: thylakoid membrane2.15E-02
29GO:0009532: plastid stroma2.30E-02
30GO:0015629: actin cytoskeleton2.62E-02
31GO:0005744: mitochondrial inner membrane presequence translocase complex2.78E-02
32GO:0012505: endomembrane system2.81E-02
33GO:0031965: nuclear membrane3.63E-02
34GO:0009505: plant-type cell wall4.16E-02
35GO:0009295: nucleoid4.55E-02
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Gene type



Gene DE type