GO Enrichment Analysis of Co-expressed Genes with
AT5G52960
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042407: cristae formation | 0.00E+00 |
| 2 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 3 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 4 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 5 | GO:0009069: serine family amino acid metabolic process | 0.00E+00 |
| 6 | GO:0097275: cellular ammonia homeostasis | 0.00E+00 |
| 7 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 8 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 9 | GO:0070178: D-serine metabolic process | 0.00E+00 |
| 10 | GO:0051924: regulation of calcium ion transport | 0.00E+00 |
| 11 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 12 | GO:0010190: cytochrome b6f complex assembly | 3.80E-05 |
| 13 | GO:0042026: protein refolding | 5.36E-05 |
| 14 | GO:0006353: DNA-templated transcription, termination | 9.31E-05 |
| 15 | GO:0009657: plastid organization | 1.17E-04 |
| 16 | GO:0032544: plastid translation | 1.17E-04 |
| 17 | GO:1905039: carboxylic acid transmembrane transport | 1.37E-04 |
| 18 | GO:1905200: gibberellic acid transmembrane transport | 1.37E-04 |
| 19 | GO:0005991: trehalose metabolic process | 1.37E-04 |
| 20 | GO:0080112: seed growth | 1.37E-04 |
| 21 | GO:0015995: chlorophyll biosynthetic process | 1.81E-04 |
| 22 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.04E-04 |
| 23 | GO:0006423: cysteinyl-tRNA aminoacylation | 3.16E-04 |
| 24 | GO:0018026: peptidyl-lysine monomethylation | 3.16E-04 |
| 25 | GO:0010207: photosystem II assembly | 3.55E-04 |
| 26 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 7.44E-04 |
| 27 | GO:0010731: protein glutathionylation | 7.44E-04 |
| 28 | GO:0006168: adenine salvage | 7.44E-04 |
| 29 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 7.44E-04 |
| 30 | GO:0006166: purine ribonucleoside salvage | 7.44E-04 |
| 31 | GO:0006020: inositol metabolic process | 7.44E-04 |
| 32 | GO:0051085: chaperone mediated protein folding requiring cofactor | 7.44E-04 |
| 33 | GO:0009958: positive gravitropism | 9.59E-04 |
| 34 | GO:0010107: potassium ion import | 9.85E-04 |
| 35 | GO:0006021: inositol biosynthetic process | 9.85E-04 |
| 36 | GO:0022622: root system development | 9.85E-04 |
| 37 | GO:0006457: protein folding | 1.05E-03 |
| 38 | GO:0098719: sodium ion import across plasma membrane | 1.25E-03 |
| 39 | GO:0006564: L-serine biosynthetic process | 1.25E-03 |
| 40 | GO:0044209: AMP salvage | 1.25E-03 |
| 41 | GO:0046855: inositol phosphate dephosphorylation | 1.53E-03 |
| 42 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.53E-03 |
| 43 | GO:0006563: L-serine metabolic process | 1.53E-03 |
| 44 | GO:0006751: glutathione catabolic process | 1.53E-03 |
| 45 | GO:0042549: photosystem II stabilization | 1.53E-03 |
| 46 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.53E-03 |
| 47 | GO:0010027: thylakoid membrane organization | 1.68E-03 |
| 48 | GO:1901259: chloroplast rRNA processing | 1.83E-03 |
| 49 | GO:0006458: 'de novo' protein folding | 1.83E-03 |
| 50 | GO:0009955: adaxial/abaxial pattern specification | 1.83E-03 |
| 51 | GO:0032880: regulation of protein localization | 2.15E-03 |
| 52 | GO:0042255: ribosome assembly | 2.49E-03 |
| 53 | GO:0070413: trehalose metabolism in response to stress | 2.49E-03 |
| 54 | GO:0010078: maintenance of root meristem identity | 2.49E-03 |
| 55 | GO:0055075: potassium ion homeostasis | 2.49E-03 |
| 56 | GO:0052543: callose deposition in cell wall | 2.49E-03 |
| 57 | GO:0048564: photosystem I assembly | 2.49E-03 |
| 58 | GO:0048527: lateral root development | 2.51E-03 |
| 59 | GO:0043562: cellular response to nitrogen levels | 2.85E-03 |
| 60 | GO:0071482: cellular response to light stimulus | 2.85E-03 |
| 61 | GO:0009821: alkaloid biosynthetic process | 3.22E-03 |
| 62 | GO:0090333: regulation of stomatal closure | 3.22E-03 |
| 63 | GO:0006783: heme biosynthetic process | 3.22E-03 |
| 64 | GO:0046685: response to arsenic-containing substance | 3.22E-03 |
| 65 | GO:0051453: regulation of intracellular pH | 3.60E-03 |
| 66 | GO:0005982: starch metabolic process | 3.60E-03 |
| 67 | GO:0043067: regulation of programmed cell death | 3.60E-03 |
| 68 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.60E-03 |
| 69 | GO:0015770: sucrose transport | 4.42E-03 |
| 70 | GO:0006415: translational termination | 4.42E-03 |
| 71 | GO:0009684: indoleacetic acid biosynthetic process | 4.42E-03 |
| 72 | GO:0000038: very long-chain fatty acid metabolic process | 4.42E-03 |
| 73 | GO:0009773: photosynthetic electron transport in photosystem I | 4.42E-03 |
| 74 | GO:0006790: sulfur compound metabolic process | 4.85E-03 |
| 75 | GO:0010588: cotyledon vascular tissue pattern formation | 5.30E-03 |
| 76 | GO:2000012: regulation of auxin polar transport | 5.30E-03 |
| 77 | GO:0048467: gynoecium development | 5.76E-03 |
| 78 | GO:0048367: shoot system development | 5.80E-03 |
| 79 | GO:0046854: phosphatidylinositol phosphorylation | 6.23E-03 |
| 80 | GO:0009901: anther dehiscence | 6.23E-03 |
| 81 | GO:0032259: methylation | 6.39E-03 |
| 82 | GO:0080147: root hair cell development | 7.22E-03 |
| 83 | GO:0005992: trehalose biosynthetic process | 7.22E-03 |
| 84 | GO:0006418: tRNA aminoacylation for protein translation | 7.73E-03 |
| 85 | GO:0019915: lipid storage | 8.26E-03 |
| 86 | GO:0061077: chaperone-mediated protein folding | 8.26E-03 |
| 87 | GO:0006730: one-carbon metabolic process | 8.79E-03 |
| 88 | GO:0016226: iron-sulfur cluster assembly | 8.79E-03 |
| 89 | GO:0007005: mitochondrion organization | 8.79E-03 |
| 90 | GO:0008284: positive regulation of cell proliferation | 1.05E-02 |
| 91 | GO:0016117: carotenoid biosynthetic process | 1.05E-02 |
| 92 | GO:0042335: cuticle development | 1.11E-02 |
| 93 | GO:0080022: primary root development | 1.11E-02 |
| 94 | GO:0000413: protein peptidyl-prolyl isomerization | 1.11E-02 |
| 95 | GO:0010087: phloem or xylem histogenesis | 1.11E-02 |
| 96 | GO:0006885: regulation of pH | 1.17E-02 |
| 97 | GO:0006662: glycerol ether metabolic process | 1.17E-02 |
| 98 | GO:0010197: polar nucleus fusion | 1.17E-02 |
| 99 | GO:0010182: sugar mediated signaling pathway | 1.17E-02 |
| 100 | GO:0006814: sodium ion transport | 1.23E-02 |
| 101 | GO:0009735: response to cytokinin | 1.25E-02 |
| 102 | GO:0048825: cotyledon development | 1.29E-02 |
| 103 | GO:0019252: starch biosynthetic process | 1.29E-02 |
| 104 | GO:0009851: auxin biosynthetic process | 1.29E-02 |
| 105 | GO:0032502: developmental process | 1.42E-02 |
| 106 | GO:0009409: response to cold | 1.44E-02 |
| 107 | GO:1901657: glycosyl compound metabolic process | 1.49E-02 |
| 108 | GO:0009658: chloroplast organization | 1.82E-02 |
| 109 | GO:0009627: systemic acquired resistance | 1.90E-02 |
| 110 | GO:0048481: plant ovule development | 2.12E-02 |
| 111 | GO:0008219: cell death | 2.12E-02 |
| 112 | GO:0009817: defense response to fungus, incompatible interaction | 2.12E-02 |
| 113 | GO:0009832: plant-type cell wall biogenesis | 2.20E-02 |
| 114 | GO:0009813: flavonoid biosynthetic process | 2.20E-02 |
| 115 | GO:0015979: photosynthesis | 2.57E-02 |
| 116 | GO:0034599: cellular response to oxidative stress | 2.60E-02 |
| 117 | GO:0045454: cell redox homeostasis | 2.70E-02 |
| 118 | GO:0010114: response to red light | 3.01E-02 |
| 119 | GO:0016042: lipid catabolic process | 3.23E-02 |
| 120 | GO:0006855: drug transmembrane transport | 3.36E-02 |
| 121 | GO:0042538: hyperosmotic salinity response | 3.54E-02 |
| 122 | GO:0006364: rRNA processing | 3.72E-02 |
| 123 | GO:0006417: regulation of translation | 4.00E-02 |
| 124 | GO:0055114: oxidation-reduction process | 4.50E-02 |
| 125 | GO:0006396: RNA processing | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 2 | GO:0030378: serine racemase activity | 0.00E+00 |
| 3 | GO:0003941: L-serine ammonia-lyase activity | 0.00E+00 |
| 4 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 5 | GO:0008721: D-serine ammonia-lyase activity | 0.00E+00 |
| 6 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 7 | GO:0090711: FMN hydrolase activity | 0.00E+00 |
| 8 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.37E-04 |
| 9 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.37E-04 |
| 10 | GO:1905201: gibberellin transmembrane transporter activity | 1.37E-04 |
| 11 | GO:0044183: protein binding involved in protein folding | 2.39E-04 |
| 12 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.16E-04 |
| 13 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 3.16E-04 |
| 14 | GO:0016630: protochlorophyllide reductase activity | 3.16E-04 |
| 15 | GO:0003839: gamma-glutamylcyclotransferase activity | 3.16E-04 |
| 16 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 3.16E-04 |
| 17 | GO:0004617: phosphoglycerate dehydrogenase activity | 3.16E-04 |
| 18 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.16E-04 |
| 19 | GO:0033201: alpha-1,4-glucan synthase activity | 3.16E-04 |
| 20 | GO:0004817: cysteine-tRNA ligase activity | 3.16E-04 |
| 21 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.16E-04 |
| 22 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.92E-04 |
| 23 | GO:0004148: dihydrolipoyl dehydrogenase activity | 5.20E-04 |
| 24 | GO:0004751: ribose-5-phosphate isomerase activity | 5.20E-04 |
| 25 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 5.20E-04 |
| 26 | GO:0004373: glycogen (starch) synthase activity | 5.20E-04 |
| 27 | GO:0002161: aminoacyl-tRNA editing activity | 5.20E-04 |
| 28 | GO:0003999: adenine phosphoribosyltransferase activity | 7.44E-04 |
| 29 | GO:0016149: translation release factor activity, codon specific | 7.44E-04 |
| 30 | GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 7.44E-04 |
| 31 | GO:0003727: single-stranded RNA binding | 7.68E-04 |
| 32 | GO:0051082: unfolded protein binding | 9.14E-04 |
| 33 | GO:0045430: chalcone isomerase activity | 9.85E-04 |
| 34 | GO:0009011: starch synthase activity | 9.85E-04 |
| 35 | GO:0016279: protein-lysine N-methyltransferase activity | 9.85E-04 |
| 36 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 9.85E-04 |
| 37 | GO:0019843: rRNA binding | 1.21E-03 |
| 38 | GO:0003959: NADPH dehydrogenase activity | 1.25E-03 |
| 39 | GO:0016846: carbon-sulfur lyase activity | 1.25E-03 |
| 40 | GO:0015081: sodium ion transmembrane transporter activity | 1.53E-03 |
| 41 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.83E-03 |
| 42 | GO:0008168: methyltransferase activity | 2.99E-03 |
| 43 | GO:0016788: hydrolase activity, acting on ester bonds | 3.21E-03 |
| 44 | GO:0003747: translation release factor activity | 3.22E-03 |
| 45 | GO:0016844: strictosidine synthase activity | 3.60E-03 |
| 46 | GO:0043621: protein self-association | 3.82E-03 |
| 47 | GO:0008515: sucrose transmembrane transporter activity | 4.42E-03 |
| 48 | GO:0008559: xenobiotic-transporting ATPase activity | 4.42E-03 |
| 49 | GO:0015386: potassium:proton antiporter activity | 4.42E-03 |
| 50 | GO:0000049: tRNA binding | 4.85E-03 |
| 51 | GO:0003725: double-stranded RNA binding | 5.30E-03 |
| 52 | GO:0004022: alcohol dehydrogenase (NAD) activity | 5.30E-03 |
| 53 | GO:0004089: carbonate dehydratase activity | 5.30E-03 |
| 54 | GO:0031072: heat shock protein binding | 5.30E-03 |
| 55 | GO:0008266: poly(U) RNA binding | 5.76E-03 |
| 56 | GO:0008083: growth factor activity | 5.76E-03 |
| 57 | GO:0051119: sugar transmembrane transporter activity | 6.23E-03 |
| 58 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 6.71E-03 |
| 59 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 6.71E-03 |
| 60 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 6.71E-03 |
| 61 | GO:0051536: iron-sulfur cluster binding | 7.22E-03 |
| 62 | GO:0005528: FK506 binding | 7.22E-03 |
| 63 | GO:0047134: protein-disulfide reductase activity | 1.05E-02 |
| 64 | GO:0004812: aminoacyl-tRNA ligase activity | 1.05E-02 |
| 65 | GO:0004791: thioredoxin-disulfide reductase activity | 1.23E-02 |
| 66 | GO:0048038: quinone binding | 1.36E-02 |
| 67 | GO:0015385: sodium:proton antiporter activity | 1.49E-02 |
| 68 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.49E-02 |
| 69 | GO:0016791: phosphatase activity | 1.55E-02 |
| 70 | GO:0008237: metallopeptidase activity | 1.62E-02 |
| 71 | GO:0016597: amino acid binding | 1.69E-02 |
| 72 | GO:0004721: phosphoprotein phosphatase activity | 1.98E-02 |
| 73 | GO:0102483: scopolin beta-glucosidase activity | 1.98E-02 |
| 74 | GO:0015238: drug transmembrane transporter activity | 2.20E-02 |
| 75 | GO:0004222: metalloendopeptidase activity | 2.28E-02 |
| 76 | GO:0052689: carboxylic ester hydrolase activity | 2.49E-02 |
| 77 | GO:0003735: structural constituent of ribosome | 2.55E-02 |
| 78 | GO:0008422: beta-glucosidase activity | 2.68E-02 |
| 79 | GO:0004364: glutathione transferase activity | 2.93E-02 |
| 80 | GO:0003723: RNA binding | 3.08E-02 |
| 81 | GO:0051287: NAD binding | 3.45E-02 |
| 82 | GO:0003690: double-stranded DNA binding | 3.82E-02 |
| 83 | GO:0016298: lipase activity | 3.82E-02 |
| 84 | GO:0015035: protein disulfide oxidoreductase activity | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 9.00E-26 |
| 3 | GO:0009570: chloroplast stroma | 3.56E-19 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 2.25E-14 |
| 5 | GO:0009579: thylakoid | 5.13E-11 |
| 6 | GO:0031977: thylakoid lumen | 2.57E-08 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 5.43E-07 |
| 8 | GO:0009534: chloroplast thylakoid | 2.80E-06 |
| 9 | GO:0009941: chloroplast envelope | 4.08E-06 |
| 10 | GO:0031969: chloroplast membrane | 1.07E-04 |
| 11 | GO:0009547: plastid ribosome | 1.37E-04 |
| 12 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.44E-04 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 5.43E-04 |
| 14 | GO:0019898: extrinsic component of membrane | 1.10E-03 |
| 15 | GO:0009295: nucleoid | 1.50E-03 |
| 16 | GO:0009501: amyloplast | 2.49E-03 |
| 17 | GO:0005763: mitochondrial small ribosomal subunit | 3.22E-03 |
| 18 | GO:0000311: plastid large ribosomal subunit | 4.85E-03 |
| 19 | GO:0009508: plastid chromosome | 5.30E-03 |
| 20 | GO:0030095: chloroplast photosystem II | 5.76E-03 |
| 21 | GO:0010287: plastoglobule | 8.02E-03 |
| 22 | GO:0015935: small ribosomal subunit | 8.26E-03 |
| 23 | GO:0010319: stromule | 1.62E-02 |
| 24 | GO:0000325: plant-type vacuole | 2.36E-02 |
| 25 | GO:0005840: ribosome | 3.60E-02 |
| 26 | GO:0009536: plastid | 4.36E-02 |