co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G52940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1904277: negative regulation of wax biosynthetic process	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0043392: negative regulation of DNA binding	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
7	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
8	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
9	GO:0048437: floral organ development	1.99E-04
10	GO:0010480: microsporocyte differentiation	2.65E-04
11	GO:0042371: vitamin K biosynthetic process	2.65E-04
12	GO:0043686: co-translational protein modification	2.65E-04
13	GO:0043007: maintenance of rDNA	2.65E-04
14	GO:0015904: tetracycline transport	2.65E-04
15	GO:0005991: trehalose metabolic process	2.65E-04
16	GO:0006747: FAD biosynthetic process	2.65E-04
17	GO:0000023: maltose metabolic process	2.65E-04
18	GO:0080112: seed growth	2.65E-04
19	GO:0005980: glycogen catabolic process	2.65E-04
20	GO:0030198: extracellular matrix organization	2.65E-04
21	GO:0046520: sphingoid biosynthetic process	2.65E-04
22	GO:0007093: mitotic cell cycle checkpoint	2.65E-04
23	GO:1905039: carboxylic acid transmembrane transport	2.65E-04
24	GO:1905200: gibberellic acid transmembrane transport	2.65E-04
25	GO:0010206: photosystem II repair	3.74E-04
26	GO:0006508: proteolysis	5.68E-04
27	GO:0007154: cell communication	5.83E-04
28	GO:0018026: peptidyl-lysine monomethylation	5.83E-04
29	GO:0071497: cellular response to freezing	5.83E-04
30	GO:0090342: regulation of cell aging	5.83E-04
31	GO:0042325: regulation of phosphorylation	5.83E-04
32	GO:0051304: chromosome separation	5.83E-04
33	GO:0006568: tryptophan metabolic process	5.83E-04
34	GO:0009629: response to gravity	5.83E-04
35	GO:0009773: photosynthetic electron transport in photosystem I	5.99E-04
36	GO:0005983: starch catabolic process	6.85E-04
37	GO:0010020: chloroplast fission	8.73E-04
38	GO:0006696: ergosterol biosynthetic process	9.47E-04
39	GO:0033591: response to L-ascorbic acid	9.47E-04
40	GO:0043572: plastid fission	1.35E-03
41	GO:0045338: farnesyl diphosphate metabolic process	1.35E-03
42	GO:0010601: positive regulation of auxin biosynthetic process	1.35E-03
43	GO:0010731: protein glutathionylation	1.35E-03
44	GO:0046739: transport of virus in multicellular host	1.35E-03
45	GO:0061077: chaperone-mediated protein folding	1.44E-03
46	GO:0006855: drug transmembrane transport	1.56E-03
47	GO:0042938: dipeptide transport	1.81E-03
48	GO:1901141: regulation of lignin biosynthetic process	1.81E-03
49	GO:0022622: root system development	1.81E-03
50	GO:0006221: pyrimidine nucleotide biosynthetic process	1.81E-03
51	GO:0006857: oligopeptide transport	2.04E-03
52	GO:0010236: plastoquinone biosynthetic process	2.31E-03
53	GO:0031365: N-terminal protein amino acid modification	2.31E-03
54	GO:0010405: arabinogalactan protein metabolic process	2.85E-03
55	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.85E-03
56	GO:0009959: negative gravitropism	2.85E-03
57	GO:0000470: maturation of LSU-rRNA	2.85E-03
58	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.85E-03
59	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.85E-03
60	GO:0048280: vesicle fusion with Golgi apparatus	3.43E-03
61	GO:0048509: regulation of meristem development	3.43E-03
62	GO:0030488: tRNA methylation	3.43E-03
63	GO:0010310: regulation of hydrogen peroxide metabolic process	3.43E-03
64	GO:0009955: adaxial/abaxial pattern specification	3.43E-03
65	GO:0042026: protein refolding	3.43E-03
66	GO:2000033: regulation of seed dormancy process	3.43E-03
67	GO:0042372: phylloquinone biosynthetic process	3.43E-03
68	GO:0006458: 'de novo' protein folding	3.43E-03
69	GO:0032880: regulation of protein localization	4.04E-03
70	GO:0010161: red light signaling pathway	4.04E-03
71	GO:0009772: photosynthetic electron transport in photosystem II	4.04E-03
72	GO:0010098: suspensor development	4.04E-03
73	GO:0009607: response to biotic stimulus	4.43E-03
74	GO:0009231: riboflavin biosynthetic process	4.69E-03
75	GO:0052543: callose deposition in cell wall	4.69E-03
76	GO:0048564: photosystem I assembly	4.69E-03
77	GO:0046620: regulation of organ growth	4.69E-03
78	GO:0006353: DNA-templated transcription, termination	4.69E-03
79	GO:0070413: trehalose metabolism in response to stress	4.69E-03
80	GO:0015995: chlorophyll biosynthetic process	4.93E-03
81	GO:0016042: lipid catabolic process	5.16E-03
82	GO:0010100: negative regulation of photomorphogenesis	5.37E-03
83	GO:0010099: regulation of photomorphogenesis	5.37E-03
84	GO:0010497: plasmodesmata-mediated intercellular transport	5.37E-03
85	GO:0009657: plastid organization	5.37E-03
86	GO:0006783: heme biosynthetic process	6.09E-03
87	GO:0046685: response to arsenic-containing substance	6.09E-03
88	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	6.83E-03
89	GO:0010205: photoinhibition	6.83E-03
90	GO:0009638: phototropism	6.83E-03
91	GO:1900865: chloroplast RNA modification	6.83E-03
92	GO:0031425: chloroplast RNA processing	6.83E-03
93	GO:0016441: posttranscriptional gene silencing	7.61E-03
94	GO:0010629: negative regulation of gene expression	7.61E-03
95	GO:0006896: Golgi to vacuole transport	7.61E-03
96	GO:0048229: gametophyte development	8.42E-03
97	GO:0010015: root morphogenesis	8.42E-03
98	GO:0000038: very long-chain fatty acid metabolic process	8.42E-03
99	GO:0015770: sucrose transport	8.42E-03
100	GO:0009640: photomorphogenesis	8.94E-03
101	GO:0006820: anion transport	9.26E-03
102	GO:0015706: nitrate transport	9.26E-03
103	GO:0010628: positive regulation of gene expression	1.01E-02
104	GO:0010075: regulation of meristem growth	1.01E-02
105	GO:2000012: regulation of auxin polar transport	1.01E-02
106	GO:0010102: lateral root morphogenesis	1.01E-02
107	GO:0009658: chloroplast organization	1.03E-02
108	GO:0009266: response to temperature stimulus	1.10E-02
109	GO:0009934: regulation of meristem structural organization	1.10E-02
110	GO:0009735: response to cytokinin	1.12E-02
111	GO:0070588: calcium ion transmembrane transport	1.20E-02
112	GO:0009901: anther dehiscence	1.20E-02
113	GO:0005992: trehalose biosynthetic process	1.39E-02
114	GO:0010187: negative regulation of seed germination	1.39E-02
115	GO:0009733: response to auxin	1.44E-02
116	GO:0006418: tRNA aminoacylation for protein translation	1.49E-02
117	GO:0048278: vesicle docking	1.59E-02
118	GO:0031348: negative regulation of defense response	1.70E-02
119	GO:0006730: one-carbon metabolic process	1.70E-02
120	GO:0009686: gibberellin biosynthetic process	1.81E-02
121	GO:0009793: embryo development ending in seed dormancy	1.85E-02
122	GO:0042147: retrograde transport, endosome to Golgi	2.03E-02
123	GO:0008284: positive regulation of cell proliferation	2.03E-02
124	GO:0048653: anther development	2.15E-02
125	GO:0042335: cuticle development	2.15E-02
126	GO:0006662: glycerol ether metabolic process	2.26E-02
127	GO:0010182: sugar mediated signaling pathway	2.26E-02
128	GO:0009741: response to brassinosteroid	2.26E-02
129	GO:0009960: endosperm development	2.26E-02
130	GO:0009958: positive gravitropism	2.26E-02
131	GO:0048544: recognition of pollen	2.38E-02
132	GO:0061025: membrane fusion	2.38E-02
133	GO:0005975: carbohydrate metabolic process	2.41E-02
134	GO:0008152: metabolic process	2.50E-02
135	GO:0019252: starch biosynthetic process	2.51E-02
136	GO:0009556: microsporogenesis	2.51E-02
137	GO:0006623: protein targeting to vacuole	2.51E-02
138	GO:0009790: embryo development	2.52E-02
139	GO:0006891: intra-Golgi vesicle-mediated transport	2.63E-02
140	GO:0071554: cell wall organization or biogenesis	2.63E-02
141	GO:0006633: fatty acid biosynthetic process	2.72E-02
142	GO:0010583: response to cyclopentenone	2.76E-02
143	GO:1901657: glycosyl compound metabolic process	2.88E-02
144	GO:0030163: protein catabolic process	2.88E-02
145	GO:0019760: glucosinolate metabolic process	3.02E-02
146	GO:0010252: auxin homeostasis	3.02E-02
147	GO:0009451: RNA modification	3.05E-02
148	GO:0009734: auxin-activated signaling pathway	3.38E-02
149	GO:0010027: thylakoid membrane organization	3.42E-02
150	GO:0016126: sterol biosynthetic process	3.42E-02
151	GO:0010029: regulation of seed germination	3.56E-02
152	GO:0006906: vesicle fusion	3.70E-02
153	GO:0006888: ER to Golgi vesicle-mediated transport	3.84E-02
154	GO:0048481: plant ovule development	4.13E-02
155	GO:0009832: plant-type cell wall biogenesis	4.28E-02
156	GO:0000160: phosphorelay signal transduction system	4.28E-02
157	GO:0009813: flavonoid biosynthetic process	4.28E-02
158	GO:0009416: response to light stimulus	4.49E-02
159	GO:0009555: pollen development	4.49E-02
160	GO:0009631: cold acclimation	4.58E-02
161	GO:0048527: lateral root development	4.58E-02
162	GO:0035556: intracellular signal transduction	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0097100: supercoiled DNA binding	0.00E+00
2	GO:0005201: extracellular matrix structural constituent	0.00E+00
3	GO:0005363: maltose transmembrane transporter activity	0.00E+00
4	GO:0090711: FMN hydrolase activity	0.00E+00
5	GO:0010303: limit dextrinase activity	0.00E+00
6	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0051060: pullulanase activity	0.00E+00
9	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
10	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.65E-04
11	GO:0000170: sphingosine hydroxylase activity	2.65E-04
12	GO:0050139: nicotinate-N-glucosyltransferase activity	2.65E-04
13	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.65E-04
14	GO:1905201: gibberellin transmembrane transporter activity	2.65E-04
15	GO:0008184: glycogen phosphorylase activity	2.65E-04
16	GO:0042586: peptide deformylase activity	2.65E-04
17	GO:0004856: xylulokinase activity	2.65E-04
18	GO:0010313: phytochrome binding	2.65E-04
19	GO:0004645: phosphorylase activity	2.65E-04
20	GO:0071949: FAD binding	3.74E-04
21	GO:0008237: metallopeptidase activity	4.29E-04
22	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.83E-04
23	GO:0003919: FMN adenylyltransferase activity	5.83E-04
24	GO:0042284: sphingolipid delta-4 desaturase activity	5.83E-04
25	GO:0008493: tetracycline transporter activity	5.83E-04
26	GO:0016630: protochlorophyllide reductase activity	5.83E-04
27	GO:0015238: drug transmembrane transporter activity	7.43E-04
28	GO:0004222: metalloendopeptidase activity	7.90E-04
29	GO:0045174: glutathione dehydrogenase (ascorbate) activity	9.47E-04
30	GO:0002161: aminoacyl-tRNA editing activity	9.47E-04
31	GO:0004148: dihydrolipoyl dehydrogenase activity	9.47E-04
32	GO:0005504: fatty acid binding	9.47E-04
33	GO:0005528: FK506 binding	1.20E-03
34	GO:0005215: transporter activity	1.33E-03
35	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.35E-03
36	GO:0009041: uridylate kinase activity	1.35E-03
37	GO:0004176: ATP-dependent peptidase activity	1.44E-03
38	GO:0004659: prenyltransferase activity	1.81E-03
39	GO:0016279: protein-lysine N-methyltransferase activity	1.81E-03
40	GO:0042936: dipeptide transporter activity	1.81E-03
41	GO:0045430: chalcone isomerase activity	1.81E-03
42	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.31E-03
43	GO:0003959: NADPH dehydrogenase activity	2.31E-03
44	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	2.85E-03
45	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.85E-03
46	GO:0004629: phospholipase C activity	2.85E-03
47	GO:0035673: oligopeptide transmembrane transporter activity	2.85E-03
48	GO:0004556: alpha-amylase activity	2.85E-03
49	GO:0004435: phosphatidylinositol phospholipase C activity	3.43E-03
50	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.43E-03
51	GO:0003824: catalytic activity	4.35E-03
52	GO:0004252: serine-type endopeptidase activity	4.46E-03
53	GO:0008173: RNA methyltransferase activity	5.37E-03
54	GO:0015297: antiporter activity	5.54E-03
55	GO:0016491: oxidoreductase activity	6.21E-03
56	GO:0000149: SNARE binding	7.57E-03
57	GO:0008327: methyl-CpG binding	8.42E-03
58	GO:0008559: xenobiotic-transporting ATPase activity	8.42E-03
59	GO:0044183: protein binding involved in protein folding	8.42E-03
60	GO:0047372: acylglycerol lipase activity	8.42E-03
61	GO:0008515: sucrose transmembrane transporter activity	8.42E-03
62	GO:0005484: SNAP receptor activity	8.94E-03
63	GO:0015198: oligopeptide transporter activity	9.26E-03
64	GO:0000049: tRNA binding	9.26E-03
65	GO:0000976: transcription regulatory region sequence-specific DNA binding	9.26E-03
66	GO:0043621: protein self-association	9.68E-03
67	GO:0004089: carbonate dehydratase activity	1.01E-02
68	GO:0005262: calcium channel activity	1.01E-02
69	GO:0019888: protein phosphatase regulator activity	1.01E-02
70	GO:0003725: double-stranded RNA binding	1.01E-02
71	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.04E-02
72	GO:0008083: growth factor activity	1.10E-02
73	GO:0044212: transcription regulatory region DNA binding	1.18E-02
74	GO:0051119: sugar transmembrane transporter activity	1.20E-02
75	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.29E-02
76	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.29E-02
77	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.29E-02
78	GO:0005345: purine nucleobase transmembrane transporter activity	1.49E-02
79	GO:0033612: receptor serine/threonine kinase binding	1.59E-02
80	GO:0003727: single-stranded RNA binding	1.92E-02
81	GO:0008514: organic anion transmembrane transporter activity	1.92E-02
82	GO:0047134: protein-disulfide reductase activity	2.03E-02
83	GO:0004812: aminoacyl-tRNA ligase activity	2.03E-02
84	GO:0003713: transcription coactivator activity	2.26E-02
85	GO:0004791: thioredoxin-disulfide reductase activity	2.38E-02
86	GO:0004519: endonuclease activity	2.45E-02
87	GO:0000156: phosphorelay response regulator activity	2.88E-02
88	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.88E-02
89	GO:0016791: phosphatase activity	3.02E-02
90	GO:0016413: O-acetyltransferase activity	3.28E-02
91	GO:0003723: RNA binding	3.76E-02
92	GO:0042802: identical protein binding	3.78E-02
93	GO:0102483: scopolin beta-glucosidase activity	3.84E-02
94	GO:0008236: serine-type peptidase activity	3.98E-02
95	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.58E-02
96	GO:0016788: hydrolase activity, acting on ester bonds	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	8.16E-12
2	GO:0009570: chloroplast stroma	6.22E-09
3	GO:0009534: chloroplast thylakoid	6.91E-05
4	GO:0031969: chloroplast membrane	1.14E-04
5	GO:0009941: chloroplast envelope	2.43E-04
6	GO:0009706: chloroplast inner membrane	4.83E-04
7	GO:0009535: chloroplast thylakoid membrane	7.18E-04
8	GO:0009840: chloroplastic endopeptidase Clp complex	3.43E-03
9	GO:0009543: chloroplast thylakoid lumen	3.90E-03
10	GO:0012507: ER to Golgi transport vesicle membrane	4.69E-03
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.09E-03
12	GO:0031201: SNARE complex	8.24E-03
13	GO:0031902: late endosome membrane	8.24E-03
14	GO:0000159: protein phosphatase type 2A complex	8.42E-03
15	GO:0009532: plastid stroma	1.59E-02
16	GO:0009579: thylakoid	1.68E-02
17	GO:0005770: late endosome	2.26E-02
18	GO:0005789: endoplasmic reticulum membrane	2.44E-02
19	GO:0043231: intracellular membrane-bounded organelle	2.50E-02
20	GO:0009295: nucleoid	3.15E-02
21	GO:0046658: anchored component of plasma membrane	3.94E-02
22	GO:0000325: plant-type vacuole	4.58E-02
23	GO:0009536: plastid	4.90E-02