co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G51820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
5	GO:0006642: triglyceride mobilization	0.00E+00
6	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
7	GO:0042407: cristae formation	0.00E+00
8	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
9	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
10	GO:0005983: starch catabolic process	2.74E-07
11	GO:0015995: chlorophyll biosynthetic process	2.56E-05
12	GO:0006747: FAD biosynthetic process	2.00E-04
13	GO:0000023: maltose metabolic process	2.00E-04
14	GO:0000025: maltose catabolic process	2.00E-04
15	GO:0005980: glycogen catabolic process	2.00E-04
16	GO:0030198: extracellular matrix organization	2.00E-04
17	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	2.00E-04
18	GO:0010480: microsporocyte differentiation	2.00E-04
19	GO:0042759: long-chain fatty acid biosynthetic process	2.00E-04
20	GO:0042371: vitamin K biosynthetic process	2.00E-04
21	GO:0043007: maintenance of rDNA	2.00E-04
22	GO:0006783: heme biosynthetic process	2.49E-04
23	GO:0009638: phototropism	2.97E-04
24	GO:2000123: positive regulation of stomatal complex development	4.48E-04
25	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.48E-04
26	GO:0006423: cysteinyl-tRNA aminoacylation	4.48E-04
27	GO:0009629: response to gravity	4.48E-04
28	GO:0007154: cell communication	4.48E-04
29	GO:0071497: cellular response to freezing	4.48E-04
30	GO:1900033: negative regulation of trichome patterning	4.48E-04
31	GO:0006633: fatty acid biosynthetic process	5.20E-04
32	GO:2000012: regulation of auxin polar transport	5.25E-04
33	GO:0016042: lipid catabolic process	5.87E-04
34	GO:0006631: fatty acid metabolic process	7.03E-04
35	GO:0032504: multicellular organism reproduction	7.29E-04
36	GO:0019563: glycerol catabolic process	7.29E-04
37	GO:0006241: CTP biosynthetic process	1.04E-03
38	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.04E-03
39	GO:0006165: nucleoside diphosphate phosphorylation	1.04E-03
40	GO:0006228: UTP biosynthetic process	1.04E-03
41	GO:0010731: protein glutathionylation	1.04E-03
42	GO:0046739: transport of virus in multicellular host	1.04E-03
43	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.04E-03
44	GO:0048629: trichome patterning	1.38E-03
45	GO:0006183: GTP biosynthetic process	1.38E-03
46	GO:0022622: root system development	1.38E-03
47	GO:2000038: regulation of stomatal complex development	1.38E-03
48	GO:1901141: regulation of lignin biosynthetic process	1.38E-03
49	GO:0009740: gibberellic acid mediated signaling pathway	1.62E-03
50	GO:0010375: stomatal complex patterning	1.76E-03
51	GO:0010236: plastoquinone biosynthetic process	1.76E-03
52	GO:0009742: brassinosteroid mediated signaling pathway	1.89E-03
53	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.95E-03
54	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.17E-03
55	GO:0009959: negative gravitropism	2.17E-03
56	GO:0000470: maturation of LSU-rRNA	2.17E-03
57	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.17E-03
58	GO:0042793: transcription from plastid promoter	2.17E-03
59	GO:0010405: arabinogalactan protein metabolic process	2.17E-03
60	GO:0042026: protein refolding	2.60E-03
61	GO:0042372: phylloquinone biosynthetic process	2.60E-03
62	GO:0006458: 'de novo' protein folding	2.60E-03
63	GO:0006457: protein folding	2.65E-03
64	GO:0010161: red light signaling pathway	3.06E-03
65	GO:0009772: photosynthetic electron transport in photosystem II	3.06E-03
66	GO:0048437: floral organ development	3.06E-03
67	GO:0010098: suspensor development	3.06E-03
68	GO:0010444: guard mother cell differentiation	3.06E-03
69	GO:0032880: regulation of protein localization	3.06E-03
70	GO:0040008: regulation of growth	3.30E-03
71	GO:0009231: riboflavin biosynthetic process	3.55E-03
72	GO:0009817: defense response to fungus, incompatible interaction	3.65E-03
73	GO:0009813: flavonoid biosynthetic process	3.83E-03
74	GO:0010099: regulation of photomorphogenesis	4.06E-03
75	GO:0010497: plasmodesmata-mediated intercellular transport	4.06E-03
76	GO:0010100: negative regulation of photomorphogenesis	4.06E-03
77	GO:0006526: arginine biosynthetic process	4.06E-03
78	GO:0032544: plastid translation	4.06E-03
79	GO:0010206: photosystem II repair	4.60E-03
80	GO:0046916: cellular transition metal ion homeostasis	4.60E-03
81	GO:0000902: cell morphogenesis	4.60E-03
82	GO:0006508: proteolysis	5.03E-03
83	GO:0043067: regulation of programmed cell death	5.15E-03
84	GO:0030001: metal ion transport	5.25E-03
85	GO:0006782: protoporphyrinogen IX biosynthetic process	5.74E-03
86	GO:0045036: protein targeting to chloroplast	5.74E-03
87	GO:0009641: shade avoidance	5.74E-03
88	GO:0009640: photomorphogenesis	5.94E-03
89	GO:0009658: chloroplast organization	6.10E-03
90	GO:0009073: aromatic amino acid family biosynthetic process	6.34E-03
91	GO:0048229: gametophyte development	6.34E-03
92	GO:0010075: regulation of meristem growth	7.61E-03
93	GO:0006094: gluconeogenesis	7.61E-03
94	GO:0010102: lateral root morphogenesis	7.61E-03
95	GO:0009785: blue light signaling pathway	7.61E-03
96	GO:0010628: positive regulation of gene expression	7.61E-03
97	GO:0006006: glucose metabolic process	7.61E-03
98	GO:0050826: response to freezing	7.61E-03
99	GO:0009585: red, far-red light phototransduction	8.01E-03
100	GO:0009266: response to temperature stimulus	8.28E-03
101	GO:0009934: regulation of meristem structural organization	8.28E-03
102	GO:0010020: chloroplast fission	8.28E-03
103	GO:0019253: reductive pentose-phosphate cycle	8.28E-03
104	GO:0010025: wax biosynthetic process	9.68E-03
105	GO:0010187: negative regulation of seed germination	1.04E-02
106	GO:0051017: actin filament bundle assembly	1.04E-02
107	GO:0048511: rhythmic process	1.19E-02
108	GO:0061077: chaperone-mediated protein folding	1.19E-02
109	GO:0048278: vesicle docking	1.19E-02
110	GO:0006730: one-carbon metabolic process	1.27E-02
111	GO:0009686: gibberellin biosynthetic process	1.35E-02
112	GO:0009411: response to UV	1.35E-02
113	GO:0009058: biosynthetic process	1.51E-02
114	GO:0008284: positive regulation of cell proliferation	1.52E-02
115	GO:0048653: anther development	1.60E-02
116	GO:0080022: primary root development	1.60E-02
117	GO:0000413: protein peptidyl-prolyl isomerization	1.60E-02
118	GO:0009741: response to brassinosteroid	1.69E-02
119	GO:0009960: endosperm development	1.69E-02
120	GO:0009958: positive gravitropism	1.69E-02
121	GO:0006520: cellular amino acid metabolic process	1.69E-02
122	GO:0010197: polar nucleus fusion	1.69E-02
123	GO:0042752: regulation of circadian rhythm	1.78E-02
124	GO:0048544: recognition of pollen	1.78E-02
125	GO:0061025: membrane fusion	1.78E-02
126	GO:0019252: starch biosynthetic process	1.87E-02
127	GO:0071554: cell wall organization or biogenesis	1.97E-02
128	GO:0007623: circadian rhythm	1.98E-02
129	GO:0032502: developmental process	2.06E-02
130	GO:1901657: glycosyl compound metabolic process	2.16E-02
131	GO:0009567: double fertilization forming a zygote and endosperm	2.25E-02
132	GO:0030154: cell differentiation	2.28E-02
133	GO:0007267: cell-cell signaling	2.35E-02
134	GO:0009607: response to biotic stimulus	2.66E-02
135	GO:0010029: regulation of seed germination	2.66E-02
136	GO:0006906: vesicle fusion	2.76E-02
137	GO:0000160: phosphorelay signal transduction system	3.20E-02
138	GO:0009631: cold acclimation	3.42E-02
139	GO:0048527: lateral root development	3.42E-02
140	GO:0045087: innate immune response	3.65E-02
141	GO:0005975: carbohydrate metabolic process	3.70E-02
142	GO:0006839: mitochondrial transport	4.01E-02
143	GO:0006887: exocytosis	4.13E-02
144	GO:0042542: response to hydrogen peroxide	4.25E-02
145	GO:0015979: photosynthesis	4.33E-02
146	GO:0045892: negative regulation of transcription, DNA-templated	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0005201: extracellular matrix structural constituent	0.00E+00
2	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
3	GO:0005363: maltose transmembrane transporter activity	0.00E+00
4	GO:0010303: limit dextrinase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0051060: pullulanase activity	0.00E+00
8	GO:0047661: amino-acid racemase activity	0.00E+00
9	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
10	GO:0005504: fatty acid binding	6.94E-06
11	GO:0045430: chalcone isomerase activity	2.94E-05
12	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.00E-04
13	GO:0050139: nicotinate-N-glucosyltransferase activity	2.00E-04
14	GO:0004807: triose-phosphate isomerase activity	2.00E-04
15	GO:0008184: glycogen phosphorylase activity	2.00E-04
16	GO:0050308: sugar-phosphatase activity	2.00E-04
17	GO:0004853: uroporphyrinogen decarboxylase activity	2.00E-04
18	GO:0010313: phytochrome binding	2.00E-04
19	GO:0004134: 4-alpha-glucanotransferase activity	2.00E-04
20	GO:0004645: phosphorylase activity	2.00E-04
21	GO:0009374: biotin binding	2.00E-04
22	GO:0019203: carbohydrate phosphatase activity	2.00E-04
23	GO:0004817: cysteine-tRNA ligase activity	4.48E-04
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.48E-04
25	GO:0003919: FMN adenylyltransferase activity	4.48E-04
26	GO:0016630: protochlorophyllide reductase activity	4.48E-04
27	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	4.48E-04
28	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.29E-04
29	GO:0070330: aromatase activity	7.29E-04
30	GO:0045174: glutathione dehydrogenase (ascorbate) activity	7.29E-04
31	GO:0046983: protein dimerization activity	8.20E-04
32	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.42E-04
33	GO:0016851: magnesium chelatase activity	1.04E-03
34	GO:0004550: nucleoside diphosphate kinase activity	1.04E-03
35	GO:0043023: ribosomal large subunit binding	1.04E-03
36	GO:0004659: prenyltransferase activity	1.38E-03
37	GO:0003989: acetyl-CoA carboxylase activity	1.76E-03
38	GO:0003959: NADPH dehydrogenase activity	1.76E-03
39	GO:0018685: alkane 1-monooxygenase activity	1.76E-03
40	GO:0052689: carboxylic ester hydrolase activity	1.86E-03
41	GO:2001070: starch binding	2.17E-03
42	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.17E-03
43	GO:0004556: alpha-amylase activity	2.17E-03
44	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.60E-03
45	GO:0046914: transition metal ion binding	4.06E-03
46	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.60E-03
47	GO:0016788: hydrolase activity, acting on ester bonds	6.24E-03
48	GO:0044183: protein binding involved in protein folding	6.34E-03
49	GO:0047372: acylglycerol lipase activity	6.34E-03
50	GO:0004089: carbonate dehydratase activity	7.61E-03
51	GO:0008083: growth factor activity	8.28E-03
52	GO:0008266: poly(U) RNA binding	8.28E-03
53	GO:0016298: lipase activity	8.29E-03
54	GO:0003887: DNA-directed DNA polymerase activity	9.68E-03
55	GO:0005528: FK506 binding	1.04E-02
56	GO:0043424: protein histidine kinase binding	1.12E-02
57	GO:0005507: copper ion binding	1.18E-02
58	GO:0033612: receptor serine/threonine kinase binding	1.19E-02
59	GO:0019843: rRNA binding	1.43E-02
60	GO:0003727: single-stranded RNA binding	1.43E-02
61	GO:0009055: electron carrier activity	1.44E-02
62	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.63E-02
63	GO:0001085: RNA polymerase II transcription factor binding	1.69E-02
64	GO:0019901: protein kinase binding	1.87E-02
65	GO:0000156: phosphorelay response regulator activity	2.16E-02
66	GO:0051015: actin filament binding	2.16E-02
67	GO:0003684: damaged DNA binding	2.25E-02
68	GO:0008237: metallopeptidase activity	2.35E-02
69	GO:0016413: O-acetyltransferase activity	2.45E-02
70	GO:0016597: amino acid binding	2.45E-02
71	GO:0042802: identical protein binding	2.52E-02
72	GO:0102483: scopolin beta-glucosidase activity	2.87E-02
73	GO:0008236: serine-type peptidase activity	2.98E-02
74	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.09E-02
75	GO:0004222: metalloendopeptidase activity	3.31E-02
76	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.42E-02
77	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.65E-02
78	GO:0008422: beta-glucosidase activity	3.89E-02
79	GO:0000149: SNARE binding	3.89E-02
80	GO:0042393: histone binding	4.01E-02
81	GO:0019825: oxygen binding	4.20E-02
82	GO:0004364: glutathione transferase activity	4.25E-02
83	GO:0004185: serine-type carboxypeptidase activity	4.37E-02
84	GO:0005484: SNAP receptor activity	4.37E-02
85	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	4.54E-02
86	GO:0043621: protein self-association	4.62E-02
87	GO:0035091: phosphatidylinositol binding	4.62E-02
88	GO:0005198: structural molecule activity	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	2.48E-17
2	GO:0009507: chloroplast	3.21E-14
3	GO:0009941: chloroplast envelope	8.97E-11
4	GO:0009534: chloroplast thylakoid	2.09E-06
5	GO:0009579: thylakoid	1.18E-04
6	GO:0010007: magnesium chelatase complex	7.29E-04
7	GO:0009317: acetyl-CoA carboxylase complex	7.29E-04
8	GO:0031969: chloroplast membrane	1.60E-03
9	GO:0009543: chloroplast thylakoid lumen	2.33E-03
10	GO:0009535: chloroplast thylakoid membrane	2.53E-03
11	GO:0009533: chloroplast stromal thylakoid	3.06E-03
12	GO:0009501: amyloplast	3.55E-03
13	GO:0009707: chloroplast outer membrane	3.65E-03
14	GO:0046658: anchored component of plasma membrane	5.00E-03
15	GO:0031977: thylakoid lumen	5.48E-03
16	GO:0090404: pollen tube tip	6.34E-03
17	GO:0009508: plastid chromosome	7.61E-03
18	GO:0009536: plastid	8.27E-03
19	GO:0015629: actin cytoskeleton	1.35E-02
20	GO:0005615: extracellular space	2.22E-02
21	GO:0010319: stromule	2.35E-02
22	GO:0009295: nucleoid	2.35E-02
23	GO:0030529: intracellular ribonucleoprotein complex	2.55E-02
24	GO:0005667: transcription factor complex	2.76E-02
25	GO:0031201: SNARE complex	4.13E-02
26	GO:0031225: anchored component of membrane	4.69E-02
27	GO:0005856: cytoskeleton	4.75E-02