co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G50560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006216: cytidine catabolic process	0.00E+00
2	GO:0006858: extracellular transport	0.00E+00
3	GO:0048034: heme O biosynthetic process	0.00E+00
4	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
5	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
6	GO:0006903: vesicle targeting	0.00E+00
7	GO:0006102: isocitrate metabolic process	2.01E-06
8	GO:0006099: tricarboxylic acid cycle	3.71E-05
9	GO:0006564: L-serine biosynthetic process	3.73E-05
10	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	5.54E-05
11	GO:0006511: ubiquitin-dependent protein catabolic process	9.60E-05
12	GO:0060321: acceptance of pollen	1.65E-04
13	GO:0010120: camalexin biosynthetic process	1.65E-04
14	GO:0019628: urate catabolic process	1.73E-04
15	GO:1901430: positive regulation of syringal lignin biosynthetic process	1.73E-04
16	GO:0042964: thioredoxin reduction	1.73E-04
17	GO:0006144: purine nucleobase metabolic process	1.73E-04
18	GO:0009821: alkaloid biosynthetic process	2.02E-04
19	GO:0009058: biosynthetic process	2.86E-04
20	GO:0009407: toxin catabolic process	3.66E-04
21	GO:0010372: positive regulation of gibberellin biosynthetic process	3.92E-04
22	GO:0043132: NAD transport	3.92E-04
23	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	3.92E-04
24	GO:0046939: nucleotide phosphorylation	3.92E-04
25	GO:0006807: nitrogen compound metabolic process	4.32E-04
26	GO:0015031: protein transport	4.66E-04
27	GO:0007031: peroxisome organization	5.46E-04
28	GO:0055074: calcium ion homeostasis	6.40E-04
29	GO:0010359: regulation of anion channel activity	6.40E-04
30	GO:0044375: regulation of peroxisome size	6.40E-04
31	GO:0090630: activation of GTPase activity	6.40E-04
32	GO:0006517: protein deglycosylation	6.40E-04
33	GO:0001927: exocyst assembly	6.40E-04
34	GO:0009636: response to toxic substance	7.01E-04
35	GO:0046686: response to cadmium ion	7.34E-04
36	GO:0015992: proton transport	8.10E-04
37	GO:0030433: ubiquitin-dependent ERAD pathway	8.83E-04
38	GO:0015858: nucleoside transport	9.13E-04
39	GO:0006612: protein targeting to membrane	9.13E-04
40	GO:0006893: Golgi to plasma membrane transport	9.13E-04
41	GO:0051601: exocyst localization	9.13E-04
42	GO:0001676: long-chain fatty acid metabolic process	9.13E-04
43	GO:0042742: defense response to bacterium	1.07E-03
44	GO:0006536: glutamate metabolic process	1.21E-03
45	GO:0006878: cellular copper ion homeostasis	1.21E-03
46	GO:0009851: auxin biosynthetic process	1.50E-03
47	GO:0046283: anthocyanin-containing compound metabolic process	1.54E-03
48	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.54E-03
49	GO:1901657: glycosyl compound metabolic process	1.82E-03
50	GO:0009228: thiamine biosynthetic process	1.89E-03
51	GO:0009972: cytidine deamination	1.89E-03
52	GO:0006561: proline biosynthetic process	1.89E-03
53	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.89E-03
54	GO:0042744: hydrogen peroxide catabolic process	2.13E-03
55	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.27E-03
56	GO:0009554: megasporogenesis	2.27E-03
57	GO:0009615: response to virus	2.30E-03
58	GO:0055114: oxidation-reduction process	2.53E-03
59	GO:1900056: negative regulation of leaf senescence	2.67E-03
60	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	2.67E-03
61	GO:0010150: leaf senescence	2.71E-03
62	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.09E-03
63	GO:0006402: mRNA catabolic process	3.09E-03
64	GO:0006491: N-glycan processing	3.09E-03
65	GO:0006499: N-terminal protein myristoylation	3.29E-03
66	GO:0007186: G-protein coupled receptor signaling pathway	3.54E-03
67	GO:0019430: removal of superoxide radicals	3.54E-03
68	GO:0010204: defense response signaling pathway, resistance gene-independent	3.54E-03
69	GO:0046685: response to arsenic-containing substance	4.00E-03
70	GO:0006783: heme biosynthetic process	4.00E-03
71	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.49E-03
72	GO:0006887: exocytosis	4.49E-03
73	GO:0009688: abscisic acid biosynthetic process	4.99E-03
74	GO:0043069: negative regulation of programmed cell death	4.99E-03
75	GO:0009682: induced systemic resistance	5.52E-03
76	GO:0052544: defense response by callose deposition in cell wall	5.52E-03
77	GO:0072593: reactive oxygen species metabolic process	5.52E-03
78	GO:0043085: positive regulation of catalytic activity	5.52E-03
79	GO:0006790: sulfur compound metabolic process	6.06E-03
80	GO:0002213: defense response to insect	6.06E-03
81	GO:0016925: protein sumoylation	6.06E-03
82	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	6.06E-03
83	GO:0009846: pollen germination	6.10E-03
84	GO:0006829: zinc II ion transport	6.61E-03
85	GO:0009718: anthocyanin-containing compound biosynthetic process	6.61E-03
86	GO:0051603: proteolysis involved in cellular protein catabolic process	6.78E-03
87	GO:0034605: cellular response to heat	7.20E-03
88	GO:0006096: glycolytic process	7.74E-03
89	GO:0010167: response to nitrate	7.79E-03
90	GO:0046854: phosphatidylinositol phosphorylation	7.79E-03
91	GO:0045454: cell redox homeostasis	7.80E-03
92	GO:0009626: plant-type hypersensitive response	8.25E-03
93	GO:0000162: tryptophan biosynthetic process	8.41E-03
94	GO:0009620: response to fungus	8.51E-03
95	GO:0045333: cellular respiration	9.03E-03
96	GO:0005992: trehalose biosynthetic process	9.03E-03
97	GO:0006874: cellular calcium ion homeostasis	9.69E-03
98	GO:0010227: floral organ abscission	1.17E-02
99	GO:0009561: megagametogenesis	1.24E-02
100	GO:0009306: protein secretion	1.24E-02
101	GO:0010089: xylem development	1.24E-02
102	GO:0051028: mRNA transport	1.32E-02
103	GO:0010118: stomatal movement	1.39E-02
104	GO:0006662: glycerol ether metabolic process	1.47E-02
105	GO:0048544: recognition of pollen	1.54E-02
106	GO:0010183: pollen tube guidance	1.62E-02
107	GO:0010193: response to ozone	1.70E-02
108	GO:0031047: gene silencing by RNA	1.78E-02
109	GO:0009630: gravitropism	1.78E-02
110	GO:0030163: protein catabolic process	1.87E-02
111	GO:0009735: response to cytokinin	1.88E-02
112	GO:0010252: auxin homeostasis	1.95E-02
113	GO:0006464: cellular protein modification process	1.95E-02
114	GO:0006914: autophagy	1.95E-02
115	GO:0006904: vesicle docking involved in exocytosis	2.04E-02
116	GO:0016579: protein deubiquitination	2.12E-02
117	GO:0006888: ER to Golgi vesicle-mediated transport	2.48E-02
118	GO:0006950: response to stress	2.48E-02
119	GO:0016049: cell growth	2.58E-02
120	GO:0050832: defense response to fungus	2.66E-02
121	GO:0055085: transmembrane transport	2.84E-02
122	GO:0009723: response to ethylene	2.90E-02
123	GO:0010119: regulation of stomatal movement	2.96E-02
124	GO:0007568: aging	2.96E-02
125	GO:0034599: cellular response to oxidative stress	3.27E-02
126	GO:0006839: mitochondrial transport	3.47E-02
127	GO:0030001: metal ion transport	3.47E-02
128	GO:0006631: fatty acid metabolic process	3.58E-02
129	GO:0006897: endocytosis	3.58E-02
130	GO:0008283: cell proliferation	3.79E-02
131	GO:0009926: auxin polar transport	3.79E-02
132	GO:0051707: response to other organism	3.79E-02
133	GO:0006855: drug transmembrane transport	4.23E-02
134	GO:0031347: regulation of defense response	4.34E-02
135	GO:0016042: lipid catabolic process	4.44E-02
136	GO:0042538: hyperosmotic salinity response	4.45E-02
137	GO:0009664: plant-type cell wall organization	4.45E-02
138	GO:0009751: response to salicylic acid	4.51E-02
139	GO:0006629: lipid metabolic process	4.57E-02
140	GO:0009809: lignin biosynthetic process	4.68E-02
141	GO:0009753: response to jasmonic acid	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0008418: protein-N-terminal asparagine amidohydrolase activity	0.00E+00
2	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
3	GO:0051765: inositol tetrakisphosphate kinase activity	0.00E+00
4	GO:0047844: deoxycytidine deaminase activity	0.00E+00
5	GO:0004846: urate oxidase activity	0.00E+00
6	GO:0044610: FMN transmembrane transporter activity	0.00E+00
7	GO:0008495: protoheme IX farnesyltransferase activity	0.00E+00
8	GO:0051766: inositol trisphosphate kinase activity	0.00E+00
9	GO:0004449: isocitrate dehydrogenase (NAD+) activity	3.46E-08
10	GO:0004298: threonine-type endopeptidase activity	4.54E-05
11	GO:0004364: glutathione transferase activity	5.14E-05
12	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	5.54E-05
13	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	5.54E-05
14	GO:0036402: proteasome-activating ATPase activity	5.54E-05
15	GO:0000824: inositol tetrakisphosphate 3-kinase activity	1.73E-04
16	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.73E-04
17	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.73E-04
18	GO:0047326: inositol tetrakisphosphate 5-kinase activity	1.73E-04
19	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	1.73E-04
20	GO:0048037: cofactor binding	1.73E-04
21	GO:0019786: Atg8-specific protease activity	1.73E-04
22	GO:0015230: FAD transmembrane transporter activity	1.73E-04
23	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	1.73E-04
24	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	1.73E-04
25	GO:0010013: N-1-naphthylphthalamic acid binding	1.73E-04
26	GO:0004743: pyruvate kinase activity	2.41E-04
27	GO:0030955: potassium ion binding	2.41E-04
28	GO:0016844: strictosidine synthase activity	2.41E-04
29	GO:0051724: NAD transporter activity	3.92E-04
30	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.92E-04
31	GO:0019779: Atg8 activating enzyme activity	3.92E-04
32	GO:0019172: glyoxalase III activity	3.92E-04
33	GO:0008517: folic acid transporter activity	3.92E-04
34	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.92E-04
35	GO:0004566: beta-glucuronidase activity	3.92E-04
36	GO:0015228: coenzyme A transmembrane transporter activity	3.92E-04
37	GO:0052739: phosphatidylserine 1-acylhydrolase activity	3.92E-04
38	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	3.92E-04
39	GO:0004617: phosphoglycerate dehydrogenase activity	3.92E-04
40	GO:0017025: TBP-class protein binding	5.46E-04
41	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.40E-04
42	GO:0051287: NAD binding	7.70E-04
43	GO:0000287: magnesium ion binding	8.33E-04
44	GO:0019201: nucleotide kinase activity	9.13E-04
45	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	9.13E-04
46	GO:0004351: glutamate decarboxylase activity	9.13E-04
47	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.21E-03
48	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.21E-03
49	GO:0004031: aldehyde oxidase activity	1.21E-03
50	GO:0004930: G-protein coupled receptor activity	1.21E-03
51	GO:0050302: indole-3-acetaldehyde oxidase activity	1.21E-03
52	GO:0019776: Atg8 ligase activity	1.21E-03
53	GO:0010279: indole-3-acetic acid amido synthetase activity	1.21E-03
54	GO:0004659: prenyltransferase activity	1.21E-03
55	GO:0004834: tryptophan synthase activity	1.21E-03
56	GO:0004791: thioredoxin-disulfide reductase activity	1.40E-03
57	GO:0008374: O-acyltransferase activity	1.54E-03
58	GO:0080122: AMP transmembrane transporter activity	1.54E-03
59	GO:0031386: protein tag	1.54E-03
60	GO:0004518: nuclease activity	1.70E-03
61	GO:0031593: polyubiquitin binding	1.89E-03
62	GO:0030170: pyridoxal phosphate binding	2.06E-03
63	GO:0004126: cytidine deaminase activity	2.27E-03
64	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.27E-03
65	GO:0102391: decanoate--CoA ligase activity	2.27E-03
66	GO:0004017: adenylate kinase activity	2.27E-03
67	GO:0005347: ATP transmembrane transporter activity	2.27E-03
68	GO:0004656: procollagen-proline 4-dioxygenase activity	2.27E-03
69	GO:0015217: ADP transmembrane transporter activity	2.27E-03
70	GO:0004467: long-chain fatty acid-CoA ligase activity	2.67E-03
71	GO:0004311: farnesyltranstransferase activity	3.09E-03
72	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	3.54E-03
73	GO:0008422: beta-glucosidase activity	4.12E-03
74	GO:0004601: peroxidase activity	4.72E-03
75	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.99E-03
76	GO:0008047: enzyme activator activity	4.99E-03
77	GO:0005198: structural molecule activity	5.46E-03
78	GO:0008794: arsenate reductase (glutaredoxin) activity	5.52E-03
79	GO:0004177: aminopeptidase activity	5.52E-03
80	GO:0008559: xenobiotic-transporting ATPase activity	5.52E-03
81	GO:0004521: endoribonuclease activity	6.06E-03
82	GO:0008233: peptidase activity	6.07E-03
83	GO:0004022: alcohol dehydrogenase (NAD) activity	6.61E-03
84	GO:0005217: intracellular ligand-gated ion channel activity	7.79E-03
85	GO:0004970: ionotropic glutamate receptor activity	7.79E-03
86	GO:0005507: copper ion binding	8.70E-03
87	GO:0020037: heme binding	9.00E-03
88	GO:0031418: L-ascorbic acid binding	9.03E-03
89	GO:0015035: protein disulfide oxidoreductase activity	9.61E-03
90	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.03E-02
91	GO:0009055: electron carrier activity	1.11E-02
92	GO:0047134: protein-disulfide reductase activity	1.32E-02
93	GO:0008565: protein transporter activity	1.40E-02
94	GO:0005199: structural constituent of cell wall	1.47E-02
95	GO:0046873: metal ion transmembrane transporter activity	1.47E-02
96	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.70E-02
97	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.87E-02
98	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.06E-02
99	GO:0016597: amino acid binding	2.12E-02
100	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.39E-02
101	GO:0102483: scopolin beta-glucosidase activity	2.48E-02
102	GO:0004683: calmodulin-dependent protein kinase activity	2.48E-02
103	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.48E-02
104	GO:0016788: hydrolase activity, acting on ester bonds	2.56E-02
105	GO:0043531: ADP binding	2.75E-02
106	GO:0005096: GTPase activator activity	2.77E-02
107	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.96E-02
108	GO:0030246: carbohydrate binding	3.05E-02
109	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.16E-02
110	GO:0003993: acid phosphatase activity	3.27E-02
111	GO:0052689: carboxylic ester hydrolase activity	3.43E-02
112	GO:0005524: ATP binding	3.45E-02
113	GO:0005516: calmodulin binding	3.51E-02
114	GO:0051537: 2 iron, 2 sulfur cluster binding	4.01E-02
115	GO:0004722: protein serine/threonine phosphatase activity	4.07E-02
116	GO:0016787: hydrolase activity	4.54E-02
117	GO:0005509: calcium ion binding	4.57E-02
118	GO:0016298: lipase activity	4.80E-02
119	GO:0005506: iron ion binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	6.35E-08
2	GO:0000502: proteasome complex	2.40E-07
3	GO:0046861: glyoxysomal membrane	5.37E-06
4	GO:0005839: proteasome core complex	4.54E-05
5	GO:0031597: cytosolic proteasome complex	7.74E-05
6	GO:0031595: nuclear proteasome complex	1.03E-04
7	GO:0005773: vacuole	1.37E-04
8	GO:0009514: glyoxysome	1.65E-04
9	GO:0016442: RISC complex	1.73E-04
10	GO:0008540: proteasome regulatory particle, base subcomplex	2.41E-04
11	GO:0048471: perinuclear region of cytoplasm	3.31E-04
12	GO:0005774: vacuolar membrane	4.40E-04
13	GO:0009530: primary cell wall	6.40E-04
14	GO:0005886: plasma membrane	8.24E-04
15	GO:0005775: vacuolar lumen	9.13E-04
16	GO:0005776: autophagosome	1.21E-03
17	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.21E-03
18	GO:0005777: peroxisome	1.50E-03
19	GO:0000145: exocyst	1.70E-03
20	GO:0005618: cell wall	1.90E-03
21	GO:0005778: peroxisomal membrane	2.05E-03
22	GO:0005783: endoplasmic reticulum	2.71E-03
23	GO:0000421: autophagosome membrane	3.09E-03
24	GO:0019773: proteasome core complex, alpha-subunit complex	3.54E-03
25	GO:0005779: integral component of peroxisomal membrane	3.54E-03
26	GO:0031090: organelle membrane	4.00E-03
27	GO:0010494: cytoplasmic stress granule	4.00E-03
28	GO:0005856: cytoskeleton	5.46E-03
29	GO:0005765: lysosomal membrane	5.52E-03
30	GO:0005635: nuclear envelope	7.01E-03
31	GO:0005758: mitochondrial intermembrane space	9.03E-03
32	GO:0070469: respiratory chain	9.69E-03
33	GO:0031410: cytoplasmic vesicle	1.10E-02
34	GO:0009524: phragmoplast	1.23E-02
35	GO:0005794: Golgi apparatus	1.27E-02
36	GO:0009536: plastid	2.01E-02
37	GO:0000932: P-body	2.21E-02
38	GO:0005788: endoplasmic reticulum lumen	2.30E-02
39	GO:0005643: nuclear pore	2.67E-02
40	GO:0005737: cytoplasm	2.69E-02
41	GO:0000325: plant-type vacuole	2.96E-02
42	GO:0090406: pollen tube	3.79E-02
43	GO:0005743: mitochondrial inner membrane	4.26E-02