Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G49100

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061157: mRNA destabilization0.00E+00
2GO:2000469: negative regulation of peroxidase activity0.00E+00
3GO:0045176: apical protein localization0.00E+00
4GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
5GO:0071000: response to magnetism0.00E+00
6GO:0009583: detection of light stimulus0.00E+00
7GO:0090697: post-embryonic plant organ morphogenesis0.00E+00
8GO:0000372: Group I intron splicing0.00E+00
9GO:0080127: fruit septum development0.00E+00
10GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
11GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
12GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
13GO:1905177: tracheary element differentiation0.00E+00
14GO:0009733: response to auxin4.04E-10
15GO:0009734: auxin-activated signaling pathway4.05E-08
16GO:0040008: regulation of growth1.72E-06
17GO:0000373: Group II intron splicing3.39E-06
18GO:0046620: regulation of organ growth5.67E-05
19GO:1902448: positive regulation of shade avoidance6.35E-05
20GO:1900865: chloroplast RNA modification1.37E-04
21GO:0009416: response to light stimulus1.62E-04
22GO:0048829: root cap development1.73E-04
23GO:0016123: xanthophyll biosynthetic process3.38E-04
24GO:0016131: brassinosteroid metabolic process3.38E-04
25GO:0016554: cytidine to uridine editing4.71E-04
26GO:0005992: trehalose biosynthetic process5.67E-04
27GO:2000021: regulation of ion homeostasis6.72E-04
28GO:0043609: regulation of carbon utilization6.72E-04
29GO:0051247: positive regulation of protein metabolic process6.72E-04
30GO:1902458: positive regulation of stomatal opening6.72E-04
31GO:0015904: tetracycline transport6.72E-04
32GO:2000905: negative regulation of starch metabolic process6.72E-04
33GO:0034757: negative regulation of iron ion transport6.72E-04
34GO:0000305: response to oxygen radical6.72E-04
35GO:0006419: alanyl-tRNA aminoacylation6.72E-04
36GO:0070509: calcium ion import6.72E-04
37GO:0043266: regulation of potassium ion transport6.72E-04
38GO:0010480: microsporocyte differentiation6.72E-04
39GO:0046520: sphingoid biosynthetic process6.72E-04
40GO:0072387: flavin adenine dinucleotide metabolic process6.72E-04
41GO:0030307: positive regulation of cell growth7.97E-04
42GO:2000070: regulation of response to water deprivation9.89E-04
43GO:0010182: sugar mediated signaling pathway1.36E-03
44GO:0009786: regulation of asymmetric cell division1.45E-03
45GO:1903426: regulation of reactive oxygen species biosynthetic process1.45E-03
46GO:2000123: positive regulation of stomatal complex development1.45E-03
47GO:0010343: singlet oxygen-mediated programmed cell death1.45E-03
48GO:1901529: positive regulation of anion channel activity1.45E-03
49GO:1900871: chloroplast mRNA modification1.45E-03
50GO:0048255: mRNA stabilization1.45E-03
51GO:0010617: circadian regulation of calcium ion oscillation1.45E-03
52GO:0010271: regulation of chlorophyll catabolic process1.45E-03
53GO:1901959: positive regulation of cutin biosynthetic process1.45E-03
54GO:0006432: phenylalanyl-tRNA aminoacylation1.45E-03
55GO:0099402: plant organ development1.45E-03
56GO:0006423: cysteinyl-tRNA aminoacylation1.45E-03
57GO:0001736: establishment of planar polarity1.45E-03
58GO:0080009: mRNA methylation1.45E-03
59GO:0007275: multicellular organism development1.46E-03
60GO:0009926: auxin polar transport1.49E-03
61GO:0009646: response to absence of light1.50E-03
62GO:0009638: phototropism1.71E-03
63GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.30E-03
64GO:0071398: cellular response to fatty acid2.39E-03
65GO:2001295: malonyl-CoA biosynthetic process2.39E-03
66GO:0030029: actin filament-based process2.39E-03
67GO:0090506: axillary shoot meristem initiation2.39E-03
68GO:0033591: response to L-ascorbic acid2.39E-03
69GO:0080117: secondary growth2.39E-03
70GO:0048586: regulation of long-day photoperiodism, flowering2.39E-03
71GO:0006000: fructose metabolic process2.39E-03
72GO:0010623: programmed cell death involved in cell development2.39E-03
73GO:0090153: regulation of sphingolipid biosynthetic process2.39E-03
74GO:1901672: positive regulation of systemic acquired resistance2.39E-03
75GO:1904278: positive regulation of wax biosynthetic process2.39E-03
76GO:0010582: floral meristem determinacy2.65E-03
77GO:0010075: regulation of meristem growth3.02E-03
78GO:0010588: cotyledon vascular tissue pattern formation3.02E-03
79GO:0009785: blue light signaling pathway3.02E-03
80GO:0010371: regulation of gibberellin biosynthetic process3.48E-03
81GO:0051513: regulation of monopolar cell growth3.48E-03
82GO:0051639: actin filament network formation3.48E-03
83GO:0034059: response to anoxia3.48E-03
84GO:1901332: negative regulation of lateral root development3.48E-03
85GO:1990019: protein storage vacuole organization3.48E-03
86GO:0000160: phosphorelay signal transduction system4.32E-03
87GO:0009755: hormone-mediated signaling pathway4.69E-03
88GO:0051764: actin crosslink formation4.69E-03
89GO:0009765: photosynthesis, light harvesting4.69E-03
90GO:2000306: positive regulation of photomorphogenesis4.69E-03
91GO:2000038: regulation of stomatal complex development4.69E-03
92GO:0006021: inositol biosynthetic process4.69E-03
93GO:0045723: positive regulation of fatty acid biosynthetic process4.69E-03
94GO:1902347: response to strigolactone4.69E-03
95GO:0010508: positive regulation of autophagy4.69E-03
96GO:0008295: spermidine biosynthetic process4.69E-03
97GO:0006749: glutathione metabolic process4.69E-03
98GO:0051017: actin filament bundle assembly4.74E-03
99GO:0006865: amino acid transport5.18E-03
100GO:0003333: amino acid transmembrane transport5.77E-03
101GO:0045487: gibberellin catabolic process6.03E-03
102GO:0010438: cellular response to sulfur starvation6.03E-03
103GO:0010158: abaxial cell fate specification6.03E-03
104GO:0080110: sporopollenin biosynthetic process6.03E-03
105GO:0010375: stomatal complex patterning6.03E-03
106GO:0010117: photoprotection6.03E-03
107GO:0046283: anthocyanin-containing compound metabolic process6.03E-03
108GO:0016120: carotene biosynthetic process6.03E-03
109GO:0045038: protein import into chloroplast thylakoid membrane6.03E-03
110GO:0048497: maintenance of floral organ identity6.03E-03
111GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.91E-03
112GO:0071215: cellular response to abscisic acid stimulus6.91E-03
113GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione7.49E-03
114GO:0048827: phyllome development7.49E-03
115GO:0009913: epidermal cell differentiation7.49E-03
116GO:0060918: auxin transport7.49E-03
117GO:0010358: leaf shaping7.49E-03
118GO:1902456: regulation of stomatal opening7.49E-03
119GO:0048831: regulation of shoot system development7.49E-03
120GO:0003006: developmental process involved in reproduction7.49E-03
121GO:1901371: regulation of leaf morphogenesis7.49E-03
122GO:0010087: phloem or xylem histogenesis8.83E-03
123GO:0010118: stomatal movement8.83E-03
124GO:0009636: response to toxic substance8.84E-03
125GO:0031930: mitochondria-nucleus signaling pathway9.06E-03
126GO:0010310: regulation of hydrogen peroxide metabolic process9.06E-03
127GO:0010244: response to low fluence blue light stimulus by blue low-fluence system9.06E-03
128GO:0006694: steroid biosynthetic process9.06E-03
129GO:0048509: regulation of meristem development9.06E-03
130GO:0030488: tRNA methylation9.06E-03
131GO:2000033: regulation of seed dormancy process9.06E-03
132GO:0009741: response to brassinosteroid9.53E-03
133GO:0010268: brassinosteroid homeostasis9.53E-03
134GO:0045892: negative regulation of transcription, DNA-templated1.06E-02
135GO:0006955: immune response1.07E-02
136GO:0048528: post-embryonic root development1.07E-02
137GO:0030497: fatty acid elongation1.07E-02
138GO:0010098: suspensor development1.07E-02
139GO:0010050: vegetative phase change1.07E-02
140GO:0048437: floral organ development1.07E-02
141GO:0000122: negative regulation of transcription from RNA polymerase II promoter1.07E-02
142GO:0006400: tRNA modification1.07E-02
143GO:0051510: regulation of unidimensional cell growth1.07E-02
144GO:0048825: cotyledon development1.10E-02
145GO:0009736: cytokinin-activated signaling pathway1.12E-02
146GO:0007166: cell surface receptor signaling pathway1.15E-02
147GO:0016132: brassinosteroid biosynthetic process1.18E-02
148GO:0071554: cell wall organization or biogenesis1.18E-02
149GO:0070413: trehalose metabolism in response to stress1.25E-02
150GO:0000105: histidine biosynthetic process1.25E-02
151GO:0006402: mRNA catabolic process1.25E-02
152GO:0010439: regulation of glucosinolate biosynthetic process1.25E-02
153GO:0009850: auxin metabolic process1.25E-02
154GO:0009819: drought recovery1.25E-02
155GO:0010583: response to cyclopentenone1.26E-02
156GO:0016042: lipid catabolic process1.41E-02
157GO:0006002: fructose 6-phosphate metabolic process1.44E-02
158GO:0015996: chlorophyll catabolic process1.44E-02
159GO:0007186: G-protein coupled receptor signaling pathway1.44E-02
160GO:0010497: plasmodesmata-mediated intercellular transport1.44E-02
161GO:0009657: plastid organization1.44E-02
162GO:0032544: plastid translation1.44E-02
163GO:0009828: plant-type cell wall loosening1.44E-02
164GO:0009056: catabolic process1.64E-02
165GO:0006098: pentose-phosphate shunt1.64E-02
166GO:0048507: meristem development1.64E-02
167GO:0009826: unidimensional cell growth1.71E-02
168GO:0010029: regulation of seed germination1.82E-02
169GO:0016573: histone acetylation1.85E-02
170GO:1900426: positive regulation of defense response to bacterium1.85E-02
171GO:0006779: porphyrin-containing compound biosynthetic process1.85E-02
172GO:0016571: histone methylation1.85E-02
173GO:0010018: far-red light signaling pathway1.85E-02
174GO:0009641: shade avoidance2.06E-02
175GO:0016441: posttranscriptional gene silencing2.06E-02
176GO:0006949: syncytium formation2.06E-02
177GO:0031627: telomeric loop formation2.06E-02
178GO:0010162: seed dormancy process2.06E-02
179GO:0009299: mRNA transcription2.06E-02
180GO:0006782: protoporphyrinogen IX biosynthetic process2.06E-02
181GO:0018298: protein-chromophore linkage2.25E-02
182GO:0048765: root hair cell differentiation2.29E-02
183GO:0009773: photosynthetic electron transport in photosystem I2.29E-02
184GO:0009682: induced systemic resistance2.29E-02
185GO:0048229: gametophyte development2.29E-02
186GO:0006415: translational termination2.29E-02
187GO:0010311: lateral root formation2.36E-02
188GO:0006468: protein phosphorylation2.39E-02
189GO:0006790: sulfur compound metabolic process2.52E-02
190GO:0010105: negative regulation of ethylene-activated signaling pathway2.52E-02
191GO:0045037: protein import into chloroplast stroma2.52E-02
192GO:0048527: lateral root development2.60E-02
193GO:0009691: cytokinin biosynthetic process2.76E-02
194GO:0010229: inflorescence development2.76E-02
195GO:0009725: response to hormone2.76E-02
196GO:0006094: gluconeogenesis2.76E-02
197GO:2000012: regulation of auxin polar transport2.76E-02
198GO:0010628: positive regulation of gene expression2.76E-02
199GO:0010102: lateral root morphogenesis2.76E-02
200GO:2000028: regulation of photoperiodism, flowering2.76E-02
201GO:0009867: jasmonic acid mediated signaling pathway2.85E-02
202GO:0009887: animal organ morphogenesis3.01E-02
203GO:0010540: basipetal auxin transport3.01E-02
204GO:0009266: response to temperature stimulus3.01E-02
205GO:0009934: regulation of meristem structural organization3.01E-02
206GO:0048467: gynoecium development3.01E-02
207GO:0010207: photosystem II assembly3.01E-02
208GO:0010223: secondary shoot formation3.01E-02
209GO:0006839: mitochondrial transport3.25E-02
210GO:0046854: phosphatidylinositol phosphorylation3.26E-02
211GO:0045454: cell redox homeostasis3.26E-02
212GO:0070588: calcium ion transmembrane transport3.26E-02
213GO:0006351: transcription, DNA-templated3.39E-02
214GO:0006631: fatty acid metabolic process3.39E-02
215GO:0042753: positive regulation of circadian rhythm3.53E-02
216GO:0009640: photomorphogenesis3.67E-02
217GO:2000377: regulation of reactive oxygen species metabolic process3.79E-02
218GO:0006338: chromatin remodeling3.79E-02
219GO:0007010: cytoskeleton organization3.79E-02
220GO:0009644: response to high light intensity3.97E-02
221GO:0006418: tRNA aminoacylation for protein translation4.07E-02
222GO:0010431: seed maturation4.35E-02
223GO:0016998: cell wall macromolecule catabolic process4.35E-02
224GO:0009664: plant-type cell wall organization4.60E-02
225GO:0009625: response to insect4.94E-02
226GO:0010082: regulation of root meristem growth4.94E-02
227GO:0009693: ethylene biosynthetic process4.94E-02
228GO:0009686: gibberellin biosynthetic process4.94E-02
229GO:0001944: vasculature development4.94E-02
RankGO TermAdjusted P value
1GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity0.00E+00
2GO:0052834: inositol monophosphate phosphatase activity0.00E+00
3GO:0071633: dihydroceramidase activity0.00E+00
4GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
5GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
6GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0004401: histidinol-phosphatase activity0.00E+00
9GO:0001872: (1->3)-beta-D-glucan binding1.32E-04
10GO:0004805: trehalose-phosphatase activity1.73E-04
11GO:0003723: RNA binding4.00E-04
12GO:0010347: L-galactose-1-phosphate phosphatase activity6.72E-04
13GO:0010012: steroid 22-alpha hydroxylase activity6.72E-04
14GO:0000170: sphingosine hydroxylase activity6.72E-04
15GO:0050139: nicotinate-N-glucosyltransferase activity6.72E-04
16GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity6.72E-04
17GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity6.72E-04
18GO:0005227: calcium activated cation channel activity6.72E-04
19GO:0042834: peptidoglycan binding6.72E-04
20GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.72E-04
21GO:0004813: alanine-tRNA ligase activity6.72E-04
22GO:0008158: hedgehog receptor activity6.72E-04
23GO:0008395: steroid hydroxylase activity6.72E-04
24GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.72E-04
25GO:0052381: tRNA dimethylallyltransferase activity6.72E-04
26GO:0017118: lipoyltransferase activity1.45E-03
27GO:0004362: glutathione-disulfide reductase activity1.45E-03
28GO:0045543: gibberellin 2-beta-dioxygenase activity1.45E-03
29GO:0043425: bHLH transcription factor binding1.45E-03
30GO:0010296: prenylcysteine methylesterase activity1.45E-03
31GO:0004766: spermidine synthase activity1.45E-03
32GO:0052832: inositol monophosphate 3-phosphatase activity1.45E-03
33GO:0004817: cysteine-tRNA ligase activity1.45E-03
34GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.45E-03
35GO:0008805: carbon-monoxide oxygenase activity1.45E-03
36GO:0042284: sphingolipid delta-4 desaturase activity1.45E-03
37GO:0008934: inositol monophosphate 1-phosphatase activity1.45E-03
38GO:0008493: tetracycline transporter activity1.45E-03
39GO:0052833: inositol monophosphate 4-phosphatase activity1.45E-03
40GO:0004826: phenylalanine-tRNA ligase activity1.45E-03
41GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.45E-03
42GO:0050736: O-malonyltransferase activity1.45E-03
43GO:0009884: cytokinin receptor activity1.45E-03
44GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.10E-03
45GO:0005034: osmosensor activity2.39E-03
46GO:0003913: DNA photolyase activity2.39E-03
47GO:0004148: dihydrolipoyl dehydrogenase activity2.39E-03
48GO:0000976: transcription regulatory region sequence-specific DNA binding2.65E-03
49GO:0000049: tRNA binding2.65E-03
50GO:0004871: signal transducer activity3.38E-03
51GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity3.48E-03
52GO:0016149: translation release factor activity, codon specific3.48E-03
53GO:0009882: blue light photoreceptor activity3.48E-03
54GO:0010011: auxin binding4.69E-03
55GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed4.69E-03
56GO:0010328: auxin influx transmembrane transporter activity4.69E-03
57GO:0019199: transmembrane receptor protein kinase activity4.69E-03
58GO:0005345: purine nucleobase transmembrane transporter activity5.24E-03
59GO:0033612: receptor serine/threonine kinase binding5.77E-03
60GO:0005471: ATP:ADP antiporter activity6.03E-03
61GO:0070696: transmembrane receptor protein serine/threonine kinase binding6.03E-03
62GO:0003989: acetyl-CoA carboxylase activity6.03E-03
63GO:0008725: DNA-3-methyladenine glycosylase activity6.03E-03
64GO:0004523: RNA-DNA hybrid ribonuclease activity6.03E-03
65GO:2001070: starch binding7.49E-03
66GO:0004332: fructose-bisphosphate aldolase activity7.49E-03
67GO:0004709: MAP kinase kinase kinase activity7.49E-03
68GO:0004462: lactoylglutathione lyase activity7.49E-03
69GO:0000293: ferric-chelate reductase activity7.49E-03
70GO:0003727: single-stranded RNA binding7.52E-03
71GO:0052689: carboxylic ester hydrolase activity8.95E-03
72GO:0019900: kinase binding9.06E-03
73GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity9.06E-03
74GO:0016832: aldehyde-lyase activity9.06E-03
75GO:0050662: coenzyme binding1.03E-02
76GO:0009881: photoreceptor activity1.07E-02
77GO:0019901: protein kinase binding1.10E-02
78GO:0004518: nuclease activity1.26E-02
79GO:0015171: amino acid transmembrane transporter activity1.27E-02
80GO:0051015: actin filament binding1.35E-02
81GO:0000156: phosphorelay response regulator activity1.35E-02
82GO:0016759: cellulose synthase activity1.44E-02
83GO:0003724: RNA helicase activity1.44E-02
84GO:0008173: RNA methyltransferase activity1.44E-02
85GO:0005200: structural constituent of cytoskeleton1.53E-02
86GO:0016413: O-acetyltransferase activity1.62E-02
87GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.64E-02
88GO:0003747: translation release factor activity1.64E-02
89GO:0071949: FAD binding1.64E-02
90GO:0016788: hydrolase activity, acting on ester bonds1.87E-02
91GO:0005524: ATP binding1.94E-02
92GO:0030247: polysaccharide binding2.03E-02
93GO:0004673: protein histidine kinase activity2.06E-02
94GO:0004672: protein kinase activity2.16E-02
95GO:0003691: double-stranded telomeric DNA binding2.29E-02
96GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.41E-02
97GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.43E-02
98GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.60E-02
99GO:0000155: phosphorelay sensor kinase activity2.76E-02
100GO:0005262: calcium channel activity2.76E-02
101GO:0003725: double-stranded RNA binding2.76E-02
102GO:0003697: single-stranded DNA binding2.85E-02
103GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.85E-02
104GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.01E-02
105GO:0003700: transcription factor activity, sequence-specific DNA binding3.03E-02
106GO:0003712: transcription cofactor activity3.26E-02
107GO:0008146: sulfotransferase activity3.26E-02
108GO:0042803: protein homodimerization activity3.49E-02
109GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.53E-02
110GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.53E-02
111GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.53E-02
112GO:0008017: microtubule binding3.69E-02
113GO:0031418: L-ascorbic acid binding3.79E-02
114GO:0005528: FK506 binding3.79E-02
115GO:0043424: protein histidine kinase binding4.07E-02
116GO:0015293: symporter activity4.12E-02
117GO:0003964: RNA-directed DNA polymerase activity4.35E-02
118GO:0004674: protein serine/threonine kinase activity4.41E-02
119GO:0042802: identical protein binding4.68E-02
120GO:0030570: pectate lyase activity4.94E-02
121GO:0004519: endonuclease activity4.97E-02
RankGO TermAdjusted P value
1GO:0000408: EKC/KEOPS complex0.00E+00
2GO:0009986: cell surface7.97E-04
3GO:0010494: cytoplasmic stress granule1.44E-03
4GO:0009317: acetyl-CoA carboxylase complex2.39E-03
5GO:0016605: PML body2.39E-03
6GO:0009528: plastid inner membrane2.39E-03
7GO:0019897: extrinsic component of plasma membrane2.39E-03
8GO:0030139: endocytic vesicle2.39E-03
9GO:0032585: multivesicular body membrane3.48E-03
10GO:0032432: actin filament bundle3.48E-03
11GO:0046658: anchored component of plasma membrane3.91E-03
12GO:0005886: plasma membrane4.02E-03
13GO:0009507: chloroplast4.56E-03
14GO:0009527: plastid outer membrane4.69E-03
15GO:0009532: plastid stroma5.77E-03
16GO:0015629: actin cytoskeleton6.91E-03
17GO:0000783: nuclear telomere cap complex1.44E-02
18GO:0030529: intracellular ribonucleoprotein complex1.72E-02
19GO:0016604: nuclear body1.85E-02
20GO:0000418: DNA-directed RNA polymerase IV complex2.06E-02
21GO:0005884: actin filament2.29E-02
22GO:0005578: proteinaceous extracellular matrix2.76E-02
23GO:0030095: chloroplast photosystem II3.01E-02
24GO:0031225: anchored component of membrane3.32E-02
25GO:0009654: photosystem II oxygen evolving complex4.07E-02
26GO:0005856: cytoskeleton4.12E-02
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Gene type



Gene DE type