GO Enrichment Analysis of Co-expressed Genes with
AT5G48590
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1905157: positive regulation of photosynthesis | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 4 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 5 | GO:0009773: photosynthetic electron transport in photosystem I | 5.66E-06 |
| 6 | GO:0015979: photosynthesis | 1.44E-05 |
| 7 | GO:1901259: chloroplast rRNA processing | 5.36E-05 |
| 8 | GO:0006353: DNA-templated transcription, termination | 9.31E-05 |
| 9 | GO:0009657: plastid organization | 1.17E-04 |
| 10 | GO:0032544: plastid translation | 1.17E-04 |
| 11 | GO:0034337: RNA folding | 1.37E-04 |
| 12 | GO:0000476: maturation of 4.5S rRNA | 1.37E-04 |
| 13 | GO:0000967: rRNA 5'-end processing | 1.37E-04 |
| 14 | GO:1902478: negative regulation of defense response to bacterium, incompatible interaction | 1.37E-04 |
| 15 | GO:0005982: starch metabolic process | 1.73E-04 |
| 16 | GO:0015995: chlorophyll biosynthetic process | 1.81E-04 |
| 17 | GO:0034470: ncRNA processing | 3.16E-04 |
| 18 | GO:0006898: receptor-mediated endocytosis | 3.16E-04 |
| 19 | GO:0010114: response to red light | 4.03E-04 |
| 20 | GO:0005977: glycogen metabolic process | 5.20E-04 |
| 21 | GO:0034051: negative regulation of plant-type hypersensitive response | 5.20E-04 |
| 22 | GO:0009768: photosynthesis, light harvesting in photosystem I | 5.43E-04 |
| 23 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 7.44E-04 |
| 24 | GO:0006020: inositol metabolic process | 7.44E-04 |
| 25 | GO:0009152: purine ribonucleotide biosynthetic process | 7.44E-04 |
| 26 | GO:0046653: tetrahydrofolate metabolic process | 7.44E-04 |
| 27 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 7.44E-04 |
| 28 | GO:0009765: photosynthesis, light harvesting | 9.85E-04 |
| 29 | GO:0015994: chlorophyll metabolic process | 9.85E-04 |
| 30 | GO:0006021: inositol biosynthetic process | 9.85E-04 |
| 31 | GO:0071483: cellular response to blue light | 9.85E-04 |
| 32 | GO:0010021: amylopectin biosynthetic process | 9.85E-04 |
| 33 | GO:0019252: starch biosynthetic process | 1.10E-03 |
| 34 | GO:0032502: developmental process | 1.25E-03 |
| 35 | GO:0006465: signal peptide processing | 1.25E-03 |
| 36 | GO:0006564: L-serine biosynthetic process | 1.25E-03 |
| 37 | GO:0009904: chloroplast accumulation movement | 1.25E-03 |
| 38 | GO:0046855: inositol phosphate dephosphorylation | 1.53E-03 |
| 39 | GO:1902456: regulation of stomatal opening | 1.53E-03 |
| 40 | GO:0010190: cytochrome b6f complex assembly | 1.53E-03 |
| 41 | GO:0009643: photosynthetic acclimation | 1.53E-03 |
| 42 | GO:0010027: thylakoid membrane organization | 1.68E-03 |
| 43 | GO:0071333: cellular response to glucose stimulus | 1.83E-03 |
| 44 | GO:0009955: adaxial/abaxial pattern specification | 1.83E-03 |
| 45 | GO:0009903: chloroplast avoidance movement | 1.83E-03 |
| 46 | GO:1900056: negative regulation of leaf senescence | 2.15E-03 |
| 47 | GO:0009769: photosynthesis, light harvesting in photosystem II | 2.15E-03 |
| 48 | GO:0009645: response to low light intensity stimulus | 2.15E-03 |
| 49 | GO:0009642: response to light intensity | 2.49E-03 |
| 50 | GO:0042255: ribosome assembly | 2.49E-03 |
| 51 | GO:0009658: chloroplast organization | 3.14E-03 |
| 52 | GO:0009821: alkaloid biosynthetic process | 3.22E-03 |
| 53 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.60E-03 |
| 54 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.60E-03 |
| 55 | GO:0009641: shade avoidance | 4.00E-03 |
| 56 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.00E-03 |
| 57 | GO:0006415: translational termination | 4.42E-03 |
| 58 | GO:0043085: positive regulation of catalytic activity | 4.42E-03 |
| 59 | GO:0006364: rRNA processing | 4.75E-03 |
| 60 | GO:0005975: carbohydrate metabolic process | 4.78E-03 |
| 61 | GO:0006790: sulfur compound metabolic process | 4.85E-03 |
| 62 | GO:0030048: actin filament-based movement | 5.30E-03 |
| 63 | GO:0010207: photosystem II assembly | 5.76E-03 |
| 64 | GO:0007015: actin filament organization | 5.76E-03 |
| 65 | GO:0010223: secondary shoot formation | 5.76E-03 |
| 66 | GO:0046854: phosphatidylinositol phosphorylation | 6.23E-03 |
| 67 | GO:0006636: unsaturated fatty acid biosynthetic process | 6.71E-03 |
| 68 | GO:0009269: response to desiccation | 8.26E-03 |
| 69 | GO:0019748: secondary metabolic process | 8.79E-03 |
| 70 | GO:0016226: iron-sulfur cluster assembly | 8.79E-03 |
| 71 | GO:0030433: ubiquitin-dependent ERAD pathway | 8.79E-03 |
| 72 | GO:0009058: biosynthetic process | 8.92E-03 |
| 73 | GO:0071215: cellular response to abscisic acid stimulus | 9.35E-03 |
| 74 | GO:0009306: protein secretion | 9.92E-03 |
| 75 | GO:0016117: carotenoid biosynthetic process | 1.05E-02 |
| 76 | GO:0006520: cellular amino acid metabolic process | 1.17E-02 |
| 77 | GO:0006662: glycerol ether metabolic process | 1.17E-02 |
| 78 | GO:0071554: cell wall organization or biogenesis | 1.36E-02 |
| 79 | GO:0009416: response to light stimulus | 1.40E-02 |
| 80 | GO:0009630: gravitropism | 1.42E-02 |
| 81 | GO:0009409: response to cold | 1.44E-02 |
| 82 | GO:1901657: glycosyl compound metabolic process | 1.49E-02 |
| 83 | GO:0006810: transport | 1.62E-02 |
| 84 | GO:0018298: protein-chromophore linkage | 2.12E-02 |
| 85 | GO:0055114: oxidation-reduction process | 2.16E-02 |
| 86 | GO:0010218: response to far red light | 2.28E-02 |
| 87 | GO:0009910: negative regulation of flower development | 2.36E-02 |
| 88 | GO:0009637: response to blue light | 2.51E-02 |
| 89 | GO:0009853: photorespiration | 2.51E-02 |
| 90 | GO:0034599: cellular response to oxidative stress | 2.60E-02 |
| 91 | GO:0000209: protein polyubiquitination | 3.10E-02 |
| 92 | GO:0009644: response to high light intensity | 3.19E-02 |
| 93 | GO:0042538: hyperosmotic salinity response | 3.54E-02 |
| 94 | GO:0006813: potassium ion transport | 3.72E-02 |
| 95 | GO:0006417: regulation of translation | 4.00E-02 |
| 96 | GO:0006396: RNA processing | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 2 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 3 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 4 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 5 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 6 | GO:0016851: magnesium chelatase activity | 8.27E-06 |
| 7 | GO:0035671: enone reductase activity | 1.37E-04 |
| 8 | GO:0019843: rRNA binding | 1.53E-04 |
| 9 | GO:0047746: chlorophyllase activity | 3.16E-04 |
| 10 | GO:0004617: phosphoglycerate dehydrogenase activity | 3.16E-04 |
| 11 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.16E-04 |
| 12 | GO:0033201: alpha-1,4-glucan synthase activity | 3.16E-04 |
| 13 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 3.16E-04 |
| 14 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.16E-04 |
| 15 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.16E-04 |
| 16 | GO:0019156: isoamylase activity | 3.16E-04 |
| 17 | GO:0031409: pigment binding | 4.45E-04 |
| 18 | GO:0008864: formyltetrahydrofolate deformylase activity | 5.20E-04 |
| 19 | GO:0004373: glycogen (starch) synthase activity | 5.20E-04 |
| 20 | GO:0004751: ribose-5-phosphate isomerase activity | 5.20E-04 |
| 21 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 5.20E-04 |
| 22 | GO:0016149: translation release factor activity, codon specific | 7.44E-04 |
| 23 | GO:0022890: inorganic cation transmembrane transporter activity | 7.44E-04 |
| 24 | GO:0003727: single-stranded RNA binding | 7.68E-04 |
| 25 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 9.85E-04 |
| 26 | GO:0009011: starch synthase activity | 9.85E-04 |
| 27 | GO:2001070: starch binding | 1.53E-03 |
| 28 | GO:0004556: alpha-amylase activity | 1.53E-03 |
| 29 | GO:0016168: chlorophyll binding | 1.77E-03 |
| 30 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.83E-03 |
| 31 | GO:0003747: translation release factor activity | 3.22E-03 |
| 32 | GO:0016844: strictosidine synthase activity | 3.60E-03 |
| 33 | GO:0008047: enzyme activator activity | 4.00E-03 |
| 34 | GO:0008559: xenobiotic-transporting ATPase activity | 4.42E-03 |
| 35 | GO:0015386: potassium:proton antiporter activity | 4.42E-03 |
| 36 | GO:0031072: heat shock protein binding | 5.30E-03 |
| 37 | GO:0004565: beta-galactosidase activity | 5.30E-03 |
| 38 | GO:0004022: alcohol dehydrogenase (NAD) activity | 5.30E-03 |
| 39 | GO:0003774: motor activity | 5.76E-03 |
| 40 | GO:0008266: poly(U) RNA binding | 5.76E-03 |
| 41 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 5.76E-03 |
| 42 | GO:0051536: iron-sulfur cluster binding | 7.22E-03 |
| 43 | GO:0015079: potassium ion transmembrane transporter activity | 7.73E-03 |
| 44 | GO:0047134: protein-disulfide reductase activity | 1.05E-02 |
| 45 | GO:0004791: thioredoxin-disulfide reductase activity | 1.23E-02 |
| 46 | GO:0015299: solute:proton antiporter activity | 1.23E-02 |
| 47 | GO:0048038: quinone binding | 1.36E-02 |
| 48 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.49E-02 |
| 49 | GO:0016413: O-acetyltransferase activity | 1.69E-02 |
| 50 | GO:0016597: amino acid binding | 1.69E-02 |
| 51 | GO:0016788: hydrolase activity, acting on ester bonds | 1.85E-02 |
| 52 | GO:0102483: scopolin beta-glucosidase activity | 1.98E-02 |
| 53 | GO:0003735: structural constituent of ribosome | 2.55E-02 |
| 54 | GO:0003993: acid phosphatase activity | 2.60E-02 |
| 55 | GO:0008422: beta-glucosidase activity | 2.68E-02 |
| 56 | GO:0004185: serine-type carboxypeptidase activity | 3.01E-02 |
| 57 | GO:0043621: protein self-association | 3.19E-02 |
| 58 | GO:0051287: NAD binding | 3.45E-02 |
| 59 | GO:0003690: double-stranded DNA binding | 3.82E-02 |
| 60 | GO:0031625: ubiquitin protein ligase binding | 4.00E-02 |
| 61 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.29E-02 |
| 62 | GO:0022857: transmembrane transporter activity | 4.58E-02 |
| 63 | GO:0016491: oxidoreductase activity | 4.75E-02 |
| 64 | GO:0051082: unfolded protein binding | 4.78E-02 |
| 65 | GO:0015035: protein disulfide oxidoreductase activity | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 7.86E-25 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.39E-15 |
| 3 | GO:0009534: chloroplast thylakoid | 9.74E-10 |
| 4 | GO:0009570: chloroplast stroma | 1.21E-09 |
| 5 | GO:0009579: thylakoid | 1.50E-08 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 5.43E-07 |
| 7 | GO:0031977: thylakoid lumen | 9.64E-07 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.37E-06 |
| 9 | GO:0010007: magnesium chelatase complex | 3.53E-06 |
| 10 | GO:0009941: chloroplast envelope | 4.08E-06 |
| 11 | GO:0031969: chloroplast membrane | 1.07E-04 |
| 12 | GO:0009547: plastid ribosome | 1.37E-04 |
| 13 | GO:0005787: signal peptidase complex | 1.37E-04 |
| 14 | GO:0043036: starch grain | 3.16E-04 |
| 15 | GO:0030076: light-harvesting complex | 3.99E-04 |
| 16 | GO:0033281: TAT protein transport complex | 5.20E-04 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 5.43E-04 |
| 18 | GO:0030658: transport vesicle membrane | 7.44E-04 |
| 19 | GO:0009517: PSII associated light-harvesting complex II | 9.85E-04 |
| 20 | GO:0019898: extrinsic component of membrane | 1.10E-03 |
| 21 | GO:0010287: plastoglobule | 1.13E-03 |
| 22 | GO:0009501: amyloplast | 2.49E-03 |
| 23 | GO:0031982: vesicle | 2.49E-03 |
| 24 | GO:0005840: ribosome | 2.50E-03 |
| 25 | GO:0005763: mitochondrial small ribosomal subunit | 3.22E-03 |
| 26 | GO:0016459: myosin complex | 4.00E-03 |
| 27 | GO:0000311: plastid large ribosomal subunit | 4.85E-03 |
| 28 | GO:0032040: small-subunit processome | 4.85E-03 |
| 29 | GO:0009508: plastid chromosome | 5.30E-03 |
| 30 | GO:0042651: thylakoid membrane | 7.73E-03 |
| 31 | GO:0015935: small ribosomal subunit | 8.26E-03 |
| 32 | GO:0005623: cell | 8.69E-03 |
| 33 | GO:0009522: photosystem I | 1.23E-02 |
| 34 | GO:0009523: photosystem II | 1.29E-02 |
| 35 | GO:0010319: stromule | 1.62E-02 |
| 36 | GO:0009295: nucleoid | 1.62E-02 |
| 37 | GO:0009707: chloroplast outer membrane | 2.12E-02 |
| 38 | GO:0000325: plant-type vacuole | 2.36E-02 |
| 39 | GO:0009706: chloroplast inner membrane | 4.78E-02 |