co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G48490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009715: chalcone biosynthetic process	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:0090279: regulation of calcium ion import	0.00E+00
4	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
5	GO:0042820: vitamin B6 catabolic process	0.00E+00
6	GO:0071474: cellular hyperosmotic response	0.00E+00
7	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
8	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
9	GO:1901259: chloroplast rRNA processing	1.39E-06
10	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.19E-06
11	GO:0009773: photosynthetic electron transport in photosystem I	1.64E-05
12	GO:0015995: chlorophyll biosynthetic process	3.17E-05
13	GO:0015979: photosynthesis	7.65E-05
14	GO:0000476: maturation of 4.5S rRNA	2.16E-04
15	GO:0009443: pyridoxal 5'-phosphate salvage	2.16E-04
16	GO:0000967: rRNA 5'-end processing	2.16E-04
17	GO:0046467: membrane lipid biosynthetic process	2.16E-04
18	GO:0015671: oxygen transport	2.16E-04
19	GO:1904966: positive regulation of vitamin E biosynthetic process	2.16E-04
20	GO:1904964: positive regulation of phytol biosynthetic process	2.16E-04
21	GO:0032502: developmental process	2.25E-04
22	GO:0009657: plastid organization	2.29E-04
23	GO:0032544: plastid translation	2.29E-04
24	GO:0005982: starch metabolic process	3.31E-04
25	GO:0019684: photosynthesis, light reaction	4.49E-04
26	GO:0009629: response to gravity	4.81E-04
27	GO:0034755: iron ion transmembrane transport	4.81E-04
28	GO:0071457: cellular response to ozone	4.81E-04
29	GO:0010541: acropetal auxin transport	4.81E-04
30	GO:1904143: positive regulation of carotenoid biosynthetic process	4.81E-04
31	GO:0051262: protein tetramerization	4.81E-04
32	GO:0034470: ncRNA processing	4.81E-04
33	GO:0009767: photosynthetic electron transport chain	5.83E-04
34	GO:0010207: photosystem II assembly	6.57E-04
35	GO:0006954: inflammatory response	7.83E-04
36	GO:0090391: granum assembly	7.83E-04
37	GO:0010160: formation of animal organ boundary	7.83E-04
38	GO:0005977: glycogen metabolic process	7.83E-04
39	GO:0010114: response to red light	8.91E-04
40	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.12E-03
41	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.12E-03
42	GO:0006168: adenine salvage	1.12E-03
43	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.12E-03
44	GO:0006166: purine ribonucleoside salvage	1.12E-03
45	GO:0071484: cellular response to light intensity	1.12E-03
46	GO:0009152: purine ribonucleotide biosynthetic process	1.12E-03
47	GO:0046653: tetrahydrofolate metabolic process	1.12E-03
48	GO:0006810: transport	1.28E-03
49	GO:0015994: chlorophyll metabolic process	1.48E-03
50	GO:0010107: potassium ion import	1.48E-03
51	GO:0006546: glycine catabolic process	1.48E-03
52	GO:0010021: amylopectin biosynthetic process	1.48E-03
53	GO:0071486: cellular response to high light intensity	1.48E-03
54	GO:0009765: photosynthesis, light harvesting	1.48E-03
55	GO:0009958: positive gravitropism	1.76E-03
56	GO:0071493: cellular response to UV-B	1.89E-03
57	GO:0098719: sodium ion import across plasma membrane	1.89E-03
58	GO:0006564: L-serine biosynthetic process	1.89E-03
59	GO:0044209: AMP salvage	1.89E-03
60	GO:0006465: signal peptide processing	1.89E-03
61	GO:0019252: starch biosynthetic process	2.03E-03
62	GO:0060918: auxin transport	2.33E-03
63	GO:0032973: amino acid export	2.33E-03
64	GO:0010190: cytochrome b6f complex assembly	2.33E-03
65	GO:0009228: thiamine biosynthetic process	2.33E-03
66	GO:0050665: hydrogen peroxide biosynthetic process	2.33E-03
67	GO:0042549: photosystem II stabilization	2.33E-03
68	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.33E-03
69	GO:0009854: oxidative photosynthetic carbon pathway	2.80E-03
70	GO:0010019: chloroplast-nucleus signaling pathway	2.80E-03
71	GO:0009955: adaxial/abaxial pattern specification	2.80E-03
72	GO:0009769: photosynthesis, light harvesting in photosystem II	3.30E-03
73	GO:0009645: response to low light intensity stimulus	3.30E-03
74	GO:0009395: phospholipid catabolic process	3.30E-03
75	GO:0009772: photosynthetic electron transport in photosystem II	3.30E-03
76	GO:0043090: amino acid import	3.30E-03
77	GO:0055114: oxidation-reduction process	3.57E-03
78	GO:0042255: ribosome assembly	3.82E-03
79	GO:0006353: DNA-templated transcription, termination	3.82E-03
80	GO:0010078: maintenance of root meristem identity	3.82E-03
81	GO:0031540: regulation of anthocyanin biosynthetic process	3.82E-03
82	GO:0055075: potassium ion homeostasis	3.82E-03
83	GO:0052543: callose deposition in cell wall	3.82E-03
84	GO:0016559: peroxisome fission	3.82E-03
85	GO:0048564: photosystem I assembly	3.82E-03
86	GO:0018298: protein-chromophore linkage	4.06E-03
87	GO:0009813: flavonoid biosynthetic process	4.27E-03
88	GO:0019430: removal of superoxide radicals	4.38E-03
89	GO:0010204: defense response signaling pathway, resistance gene-independent	4.38E-03
90	GO:0043562: cellular response to nitrogen levels	4.38E-03
91	GO:0017004: cytochrome complex assembly	4.38E-03
92	GO:0010218: response to far red light	4.48E-03
93	GO:0048527: lateral root development	4.69E-03
94	GO:0009821: alkaloid biosynthetic process	4.95E-03
95	GO:0019432: triglyceride biosynthetic process	4.95E-03
96	GO:0080144: amino acid homeostasis	4.95E-03
97	GO:0090333: regulation of stomatal closure	4.95E-03
98	GO:0009637: response to blue light	5.14E-03
99	GO:0051453: regulation of intracellular pH	5.56E-03
100	GO:0006779: porphyrin-containing compound biosynthetic process	5.56E-03
101	GO:0006782: protoporphyrinogen IX biosynthetic process	6.18E-03
102	GO:0006949: syncytium formation	6.18E-03
103	GO:0009926: auxin polar transport	6.63E-03
104	GO:0009089: lysine biosynthetic process via diaminopimelate	6.84E-03
105	GO:0043085: positive regulation of catalytic activity	6.84E-03
106	GO:0006415: translational termination	6.84E-03
107	GO:0006879: cellular iron ion homeostasis	6.84E-03
108	GO:0018119: peptidyl-cysteine S-nitrosylation	6.84E-03
109	GO:0009684: indoleacetic acid biosynthetic process	6.84E-03
110	GO:0009658: chloroplast organization	7.01E-03
111	GO:0009735: response to cytokinin	7.14E-03
112	GO:0016024: CDP-diacylglycerol biosynthetic process	7.51E-03
113	GO:0008361: regulation of cell size	7.51E-03
114	GO:0010588: cotyledon vascular tissue pattern formation	8.22E-03
115	GO:0010143: cutin biosynthetic process	8.94E-03
116	GO:0010020: chloroplast fission	8.94E-03
117	GO:0010540: basipetal auxin transport	8.94E-03
118	GO:0048467: gynoecium development	8.94E-03
119	GO:0051603: proteolysis involved in cellular protein catabolic process	9.26E-03
120	GO:0009768: photosynthesis, light harvesting in photosystem I	1.21E-02
121	GO:0016114: terpenoid biosynthetic process	1.29E-02
122	GO:0019915: lipid storage	1.29E-02
123	GO:0009269: response to desiccation	1.29E-02
124	GO:0009742: brassinosteroid mediated signaling pathway	1.35E-02
125	GO:0016226: iron-sulfur cluster assembly	1.37E-02
126	GO:0019748: secondary metabolic process	1.37E-02
127	GO:0005975: carbohydrate metabolic process	1.45E-02
128	GO:0009686: gibberellin biosynthetic process	1.46E-02
129	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.46E-02
130	GO:0048443: stamen development	1.55E-02
131	GO:0009306: protein secretion	1.55E-02
132	GO:0009058: biosynthetic process	1.69E-02
133	GO:0080022: primary root development	1.74E-02
134	GO:0010087: phloem or xylem histogenesis	1.74E-02
135	GO:0010118: stomatal movement	1.74E-02
136	GO:0006885: regulation of pH	1.83E-02
137	GO:0071472: cellular response to salt stress	1.83E-02
138	GO:0009741: response to brassinosteroid	1.83E-02
139	GO:0010268: brassinosteroid homeostasis	1.83E-02
140	GO:0015986: ATP synthesis coupled proton transport	1.93E-02
141	GO:0006814: sodium ion transport	1.93E-02
142	GO:0009646: response to absence of light	1.93E-02
143	GO:0048825: cotyledon development	2.02E-02
144	GO:0009851: auxin biosynthetic process	2.02E-02
145	GO:0006413: translational initiation	2.06E-02
146	GO:0071554: cell wall organization or biogenesis	2.12E-02
147	GO:0016132: brassinosteroid biosynthetic process	2.12E-02
148	GO:0045490: pectin catabolic process	2.21E-02
149	GO:1901657: glycosyl compound metabolic process	2.33E-02
150	GO:0009639: response to red or far red light	2.44E-02
151	GO:0009828: plant-type cell wall loosening	2.44E-02
152	GO:0016125: sterol metabolic process	2.44E-02
153	GO:0008380: RNA splicing	2.64E-02
154	GO:0010027: thylakoid membrane organization	2.76E-02
155	GO:0009733: response to auxin	2.80E-02
156	GO:0042128: nitrate assimilation	2.99E-02
157	GO:0009416: response to light stimulus	3.11E-02
158	GO:0016311: dephosphorylation	3.22E-02
159	GO:0009817: defense response to fungus, incompatible interaction	3.34E-02
160	GO:0009409: response to cold	3.68E-02
161	GO:0009853: photorespiration	3.95E-02
162	GO:0034599: cellular response to oxidative stress	4.07E-02
163	GO:0055085: transmembrane transport	4.17E-02
164	GO:0080167: response to karrikin	4.23E-02
165	GO:0006839: mitochondrial transport	4.33E-02
166	GO:0006631: fatty acid metabolic process	4.46E-02
167	GO:0009640: photomorphogenesis	4.73E-02
168	GO:0051707: response to other organism	4.73E-02
169	GO:0009644: response to high light intensity	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
2	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
3	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
4	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
5	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.10E-04
6	GO:0019899: enzyme binding	1.45E-04
7	GO:0051777: ent-kaurenoate oxidase activity	2.16E-04
8	GO:0005344: oxygen transporter activity	2.16E-04
9	GO:0046906: tetrapyrrole binding	2.16E-04
10	GO:0005227: calcium activated cation channel activity	2.16E-04
11	GO:0019843: rRNA binding	4.32E-04
12	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.81E-04
13	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	4.81E-04
14	GO:0019156: isoamylase activity	4.81E-04
15	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.81E-04
16	GO:0047746: chlorophyllase activity	4.81E-04
17	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	4.81E-04
18	GO:0004617: phosphoglycerate dehydrogenase activity	4.81E-04
19	GO:0004047: aminomethyltransferase activity	4.81E-04
20	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	4.81E-04
21	GO:0033201: alpha-1,4-glucan synthase activity	4.81E-04
22	GO:0004373: glycogen (starch) synthase activity	7.83E-04
23	GO:0004751: ribose-5-phosphate isomerase activity	7.83E-04
24	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	7.83E-04
25	GO:0070402: NADPH binding	7.83E-04
26	GO:0008864: formyltetrahydrofolate deformylase activity	7.83E-04
27	GO:0004185: serine-type carboxypeptidase activity	8.91E-04
28	GO:0003999: adenine phosphoribosyltransferase activity	1.12E-03
29	GO:0016851: magnesium chelatase activity	1.12E-03
30	GO:0016149: translation release factor activity, codon specific	1.12E-03
31	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.12E-03
32	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.12E-03
33	GO:0001872: (1->3)-beta-D-glucan binding	1.12E-03
34	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.12E-03
35	GO:0016788: hydrolase activity, acting on ester bonds	1.40E-03
36	GO:0003727: single-stranded RNA binding	1.40E-03
37	GO:0045430: chalcone isomerase activity	1.48E-03
38	GO:0009011: starch synthase activity	1.48E-03
39	GO:0043495: protein anchor	1.48E-03
40	GO:0008891: glycolate oxidase activity	1.48E-03
41	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.48E-03
42	GO:0004045: aminoacyl-tRNA hydrolase activity	1.48E-03
43	GO:0016846: carbon-sulfur lyase activity	1.89E-03
44	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.33E-03
45	GO:0004784: superoxide dismutase activity	2.33E-03
46	GO:0004556: alpha-amylase activity	2.33E-03
47	GO:0015081: sodium ion transmembrane transporter activity	2.33E-03
48	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.33E-03
49	GO:2001070: starch binding	2.33E-03
50	GO:0005261: cation channel activity	2.80E-03
51	GO:0016168: chlorophyll binding	3.30E-03
52	GO:0004033: aldo-keto reductase (NADP) activity	3.82E-03
53	GO:0003747: translation release factor activity	4.95E-03
54	GO:0003993: acid phosphatase activity	5.38E-03
55	GO:0005381: iron ion transmembrane transporter activity	5.56E-03
56	GO:0016844: strictosidine synthase activity	5.56E-03
57	GO:0015386: potassium:proton antiporter activity	6.84E-03
58	GO:0047372: acylglycerol lipase activity	6.84E-03
59	GO:0051537: 2 iron, 2 sulfur cluster binding	7.17E-03
60	GO:0008378: galactosyltransferase activity	7.51E-03
61	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.74E-03
62	GO:0004565: beta-galactosidase activity	8.22E-03
63	GO:0010329: auxin efflux transmembrane transporter activity	8.22E-03
64	GO:0004022: alcohol dehydrogenase (NAD) activity	8.22E-03
65	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.94E-03
66	GO:0003690: double-stranded DNA binding	9.26E-03
67	GO:0031409: pigment binding	1.05E-02
68	GO:0051536: iron-sulfur cluster binding	1.12E-02
69	GO:0005528: FK506 binding	1.12E-02
70	GO:0030599: pectinesterase activity	1.20E-02
71	GO:0030570: pectate lyase activity	1.46E-02
72	GO:0022891: substrate-specific transmembrane transporter activity	1.46E-02
73	GO:0009055: electron carrier activity	1.65E-02
74	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.83E-02
75	GO:0010181: FMN binding	1.93E-02
76	GO:0048038: quinone binding	2.12E-02
77	GO:0015385: sodium:proton antiporter activity	2.33E-02
78	GO:0016791: phosphatase activity	2.44E-02
79	GO:0008483: transaminase activity	2.54E-02
80	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.54E-02
81	GO:0003743: translation initiation factor activity	2.58E-02
82	GO:0016597: amino acid binding	2.65E-02
83	GO:0016413: O-acetyltransferase activity	2.65E-02
84	GO:0003824: catalytic activity	2.71E-02
85	GO:0042802: identical protein binding	2.81E-02
86	GO:0102483: scopolin beta-glucosidase activity	3.10E-02
87	GO:0030247: polysaccharide binding	3.10E-02
88	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	3.22E-02
89	GO:0004601: peroxidase activity	3.42E-02
90	GO:0016491: oxidoreductase activity	3.53E-02
91	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.70E-02
92	GO:0003746: translation elongation factor activity	3.95E-02
93	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.07E-02
94	GO:0008422: beta-glucosidase activity	4.20E-02
95	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.38E-02
96	GO:0052689: carboxylic ester hydrolase activity	4.67E-02
97	GO:0043621: protein self-association	5.00E-02
98	GO:0035091: phosphatidylinositol binding	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
2	GO:0009507: chloroplast	1.56E-24
3	GO:0009535: chloroplast thylakoid membrane	3.80E-14
4	GO:0009570: chloroplast stroma	4.64E-10
5	GO:0009543: chloroplast thylakoid lumen	8.03E-09
6	GO:0009534: chloroplast thylakoid	2.80E-08
7	GO:0009941: chloroplast envelope	9.53E-08
8	GO:0009579: thylakoid	3.11E-07
9	GO:0009654: photosystem II oxygen evolving complex	1.76E-06
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.07E-06
11	GO:0030095: chloroplast photosystem II	3.16E-05
12	GO:0031977: thylakoid lumen	8.48E-05
13	GO:0009523: photosystem II	1.87E-04
14	GO:0019898: extrinsic component of membrane	1.87E-04
15	GO:0005787: signal peptidase complex	2.16E-04
16	GO:0043036: starch grain	4.81E-04
17	GO:0010007: magnesium chelatase complex	7.83E-04
18	GO:0033281: TAT protein transport complex	7.83E-04
19	GO:0042646: plastid nucleoid	1.12E-03
20	GO:0009517: PSII associated light-harvesting complex II	1.48E-03
21	GO:0009522: photosystem I	1.89E-03
22	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.33E-03
23	GO:0009295: nucleoid	2.78E-03
24	GO:0009501: amyloplast	3.82E-03
25	GO:0009539: photosystem II reaction center	4.38E-03
26	GO:0042644: chloroplast nucleoid	4.95E-03
27	GO:0005763: mitochondrial small ribosomal subunit	4.95E-03
28	GO:0005840: ribosome	7.62E-03
29	GO:0009508: plastid chromosome	8.22E-03
30	GO:0030076: light-harvesting complex	9.69E-03
31	GO:0005618: cell wall	1.10E-02
32	GO:0042651: thylakoid membrane	1.21E-02
33	GO:0010287: plastoglobule	1.52E-02
34	GO:0048046: apoplast	2.45E-02
35	GO:0010319: stromule	2.54E-02
36	GO:0030529: intracellular ribonucleoprotein complex	2.76E-02
37	GO:0046658: anchored component of plasma membrane	2.93E-02
38	GO:0005576: extracellular region	3.02E-02
39	GO:0009505: plant-type cell wall	3.29E-02
40	GO:0009707: chloroplast outer membrane	3.34E-02
41	GO:0005777: peroxisome	3.69E-02
42	GO:0031969: chloroplast membrane	4.23E-02