co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G48320

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000023: maltose metabolic process	6.06E-06
2	GO:0009629: response to gravity	1.65E-05
3	GO:0007154: cell communication	1.65E-05
4	GO:0071497: cellular response to freezing	1.65E-05
5	GO:0042325: regulation of phosphorylation	1.65E-05
6	GO:0016050: vesicle organization	3.04E-05
7	GO:1901141: regulation of lignin biosynthetic process	6.61E-05
8	GO:2000033: regulation of seed dormancy process	1.34E-04
9	GO:1900865: chloroplast RNA modification	2.72E-04
10	GO:0010380: regulation of chlorophyll biosynthetic process	2.72E-04
11	GO:0016441: posttranscriptional gene silencing	3.02E-04
12	GO:0005983: starch catabolic process	3.65E-04
13	GO:0010187: negative regulation of seed germination	5.33E-04
14	GO:0048544: recognition of pollen	8.70E-04
15	GO:0010027: thylakoid membrane organization	1.20E-03
16	GO:0009910: negative regulation of flower development	1.57E-03
17	GO:0009631: cold acclimation	1.57E-03
18	GO:0030154: cell differentiation	2.49E-03
19	GO:0009740: gibberellic acid mediated signaling pathway	2.94E-03
20	GO:0009624: response to nematode	3.06E-03
21	GO:0009742: brassinosteroid mediated signaling pathway	3.18E-03
22	GO:0007623: circadian rhythm	4.43E-03
23	GO:0008380: RNA splicing	5.00E-03
24	GO:0010468: regulation of gene expression	5.00E-03
25	GO:0009723: response to ethylene	6.61E-03
26	GO:0080167: response to karrikin	6.94E-03
27	GO:0032259: methylation	8.84E-03
28	GO:0009751: response to salicylic acid	9.02E-03
29	GO:0009753: response to jasmonic acid	9.57E-03
30	GO:0006357: regulation of transcription from RNA polymerase II promoter	1.11E-02
31	GO:0009735: response to cytokinin	1.28E-02
32	GO:0009416: response to light stimulus	1.37E-02
33	GO:0009733: response to auxin	2.45E-02
34	GO:0005975: carbohydrate metabolic process	3.04E-02
35	GO:0046686: response to cadmium ion	3.10E-02
36	GO:0007275: multicellular organism development	3.66E-02
37	GO:0007165: signal transduction	3.81E-02
38	GO:0009737: response to abscisic acid	3.87E-02
39	GO:0009793: embryo development ending in seed dormancy	4.11E-02

Rank	GO Term	Adjusted P value
1	GO:0097100: supercoiled DNA binding	0.00E+00
2	GO:0005363: maltose transmembrane transporter activity	0.00E+00
3	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	1.10E-04
4	GO:0071949: FAD binding	2.43E-04
5	GO:0019888: protein phosphatase regulator activity	3.97E-04
6	GO:0001085: RNA polymerase II transcription factor binding	8.30E-04
7	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.57E-03
8	GO:0042393: histone binding	1.82E-03
9	GO:0044212: transcription regulatory region DNA binding	2.29E-03
10	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.89E-03
11	GO:0008168: methyltransferase activity	5.83E-03
12	GO:0003682: chromatin binding	6.22E-03
13	GO:0004497: monooxygenase activity	6.94E-03
14	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	7.87E-03
15	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	8.48E-03
16	GO:0004519: endonuclease activity	9.66E-03
17	GO:0030246: carbohydrate binding	1.69E-02
18	GO:0016491: oxidoreductase activity	2.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009706: chloroplast inner membrane	1.36E-04
2	GO:0000159: protein phosphatase type 2A complex	3.33E-04
3	GO:0009508: plastid chromosome	3.97E-04
4	GO:0009295: nucleoid	1.12E-03
5	GO:0005667: transcription factor complex	1.29E-03
6	GO:0009941: chloroplast envelope	1.06E-02
7	GO:0009534: chloroplast thylakoid	1.56E-02
8	GO:0009535: chloroplast thylakoid membrane	4.01E-02
9	GO:0009507: chloroplast	4.51E-02