co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G47440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0031222: arabinan catabolic process	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:0043392: negative regulation of DNA binding	0.00E+00
5	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
6	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
7	GO:0046620: regulation of organ growth	1.30E-06
8	GO:0040008: regulation of growth	1.08E-04
9	GO:0010321: regulation of vegetative phase change	1.32E-04
10	GO:0009733: response to auxin	2.36E-04
11	GO:0009734: auxin-activated signaling pathway	2.93E-04
12	GO:0048497: maintenance of floral organ identity	3.38E-04
13	GO:0010020: chloroplast fission	3.67E-04
14	GO:0016554: cytidine to uridine editing	4.71E-04
15	GO:0042793: transcription from plastid promoter	4.71E-04
16	GO:0030488: tRNA methylation	6.24E-04
17	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.48E-04
18	GO:0070509: calcium ion import	6.72E-04
19	GO:0010480: microsporocyte differentiation	6.72E-04
20	GO:0042759: long-chain fatty acid biosynthetic process	6.72E-04
21	GO:1902458: positive regulation of stomatal opening	6.72E-04
22	GO:0015904: tetracycline transport	6.72E-04
23	GO:0000025: maltose catabolic process	6.72E-04
24	GO:0005980: glycogen catabolic process	6.72E-04
25	GO:0030198: extracellular matrix organization	6.72E-04
26	GO:0006438: valyl-tRNA aminoacylation	6.72E-04
27	GO:0046520: sphingoid biosynthetic process	6.72E-04
28	GO:2000070: regulation of response to water deprivation	9.89E-04
29	GO:0009793: embryo development ending in seed dormancy	1.02E-03
30	GO:0010497: plasmodesmata-mediated intercellular transport	1.20E-03
31	GO:0006351: transcription, DNA-templated	1.26E-03
32	GO:0016042: lipid catabolic process	1.33E-03
33	GO:0010182: sugar mediated signaling pathway	1.36E-03
34	GO:0009741: response to brassinosteroid	1.36E-03
35	GO:0019388: galactose catabolic process	1.45E-03
36	GO:0018026: peptidyl-lysine monomethylation	1.45E-03
37	GO:0071497: cellular response to freezing	1.45E-03
38	GO:0080009: mRNA methylation	1.45E-03
39	GO:0009786: regulation of asymmetric cell division	1.45E-03
40	GO:0031648: protein destabilization	1.45E-03
41	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.45E-03
42	GO:0006568: tryptophan metabolic process	1.45E-03
43	GO:2000123: positive regulation of stomatal complex development	1.45E-03
44	GO:0009640: photomorphogenesis	1.49E-03
45	GO:0009638: phototropism	1.71E-03
46	GO:1900865: chloroplast RNA modification	1.71E-03
47	GO:0071554: cell wall organization or biogenesis	1.79E-03
48	GO:0032502: developmental process	1.95E-03
49	GO:0009641: shade avoidance	2.00E-03
50	GO:0033591: response to L-ascorbic acid	2.39E-03
51	GO:0010027: thylakoid membrane organization	2.88E-03
52	GO:0010628: positive regulation of gene expression	3.02E-03
53	GO:0006006: glucose metabolic process	3.02E-03
54	GO:0030048: actin filament-based movement	3.02E-03
55	GO:0010102: lateral root morphogenesis	3.02E-03
56	GO:1990019: protein storage vacuole organization	3.48E-03
57	GO:0046739: transport of virus in multicellular host	3.48E-03
58	GO:0009590: detection of gravity	3.48E-03
59	GO:0043572: plastid fission	3.48E-03
60	GO:0010371: regulation of gibberellin biosynthetic process	3.48E-03
61	GO:0009102: biotin biosynthetic process	3.48E-03
62	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.48E-03
63	GO:2000038: regulation of stomatal complex development	4.69E-03
64	GO:0042991: transcription factor import into nucleus	4.69E-03
65	GO:0009755: hormone-mediated signaling pathway	4.69E-03
66	GO:0006808: regulation of nitrogen utilization	4.69E-03
67	GO:1901141: regulation of lignin biosynthetic process	4.69E-03
68	GO:0042274: ribosomal small subunit biogenesis	4.69E-03
69	GO:0009765: photosynthesis, light harvesting	4.69E-03
70	GO:0016120: carotene biosynthetic process	6.03E-03
71	GO:0045487: gibberellin catabolic process	6.03E-03
72	GO:0045038: protein import into chloroplast thylakoid membrane	6.03E-03
73	GO:0016123: xanthophyll biosynthetic process	6.03E-03
74	GO:0010438: cellular response to sulfur starvation	6.03E-03
75	GO:0010375: stomatal complex patterning	6.03E-03
76	GO:0018258: protein O-linked glycosylation via hydroxyproline	7.49E-03
77	GO:0033365: protein localization to organelle	7.49E-03
78	GO:0010405: arabinogalactan protein metabolic process	7.49E-03
79	GO:0010358: leaf shaping	7.49E-03
80	GO:0009913: epidermal cell differentiation	7.49E-03
81	GO:0060918: auxin transport	7.49E-03
82	GO:1902456: regulation of stomatal opening	7.49E-03
83	GO:0009926: auxin polar transport	7.61E-03
84	GO:2000033: regulation of seed dormancy process	9.06E-03
85	GO:0031930: mitochondria-nucleus signaling pathway	9.06E-03
86	GO:0006458: 'de novo' protein folding	9.06E-03
87	GO:0048509: regulation of meristem development	9.06E-03
88	GO:0042026: protein refolding	9.06E-03
89	GO:0042372: phylloquinone biosynthetic process	9.06E-03
90	GO:0010444: guard mother cell differentiation	1.07E-02
91	GO:0048528: post-embryonic root development	1.07E-02
92	GO:1900056: negative regulation of leaf senescence	1.07E-02
93	GO:0048437: floral organ development	1.07E-02
94	GO:0010098: suspensor development	1.07E-02
95	GO:0048825: cotyledon development	1.10E-02
96	GO:0009736: cytokinin-activated signaling pathway	1.12E-02
97	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.18E-02
98	GO:0009690: cytokinin metabolic process	1.25E-02
99	GO:0009704: de-etiolation	1.25E-02
100	GO:0000105: histidine biosynthetic process	1.25E-02
101	GO:0005978: glycogen biosynthetic process	1.25E-02
102	GO:0009819: drought recovery	1.25E-02
103	GO:0010439: regulation of glucosinolate biosynthetic process	1.25E-02
104	GO:0001522: pseudouridine synthesis	1.25E-02
105	GO:0010583: response to cyclopentenone	1.26E-02
106	GO:0006468: protein phosphorylation	1.27E-02
107	GO:1901657: glycosyl compound metabolic process	1.35E-02
108	GO:0009416: response to light stimulus	1.43E-02
109	GO:0015996: chlorophyll catabolic process	1.44E-02
110	GO:0007186: G-protein coupled receptor signaling pathway	1.44E-02
111	GO:0010206: photosystem II repair	1.64E-02
112	GO:0000373: Group II intron splicing	1.64E-02
113	GO:0009056: catabolic process	1.64E-02
114	GO:0051865: protein autoubiquitination	1.64E-02
115	GO:0031425: chloroplast RNA processing	1.85E-02
116	GO:0009742: brassinosteroid mediated signaling pathway	1.89E-02
117	GO:0006355: regulation of transcription, DNA-templated	2.05E-02
118	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.06E-02
119	GO:0048829: root cap development	2.06E-02
120	GO:0016441: posttranscriptional gene silencing	2.06E-02
121	GO:0006949: syncytium formation	2.06E-02
122	GO:0010162: seed dormancy process	2.06E-02
123	GO:0009073: aromatic amino acid family biosynthetic process	2.29E-02
124	GO:0048229: gametophyte development	2.29E-02
125	GO:0010015: root morphogenesis	2.29E-02
126	GO:0009773: photosynthetic electron transport in photosystem I	2.29E-02
127	GO:0009682: induced systemic resistance	2.29E-02
128	GO:0005975: carbohydrate metabolic process	2.33E-02
129	GO:0000160: phosphorelay signal transduction system	2.36E-02
130	GO:0045037: protein import into chloroplast stroma	2.52E-02
131	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.52E-02
132	GO:0000266: mitochondrial fission	2.52E-02
133	GO:0012501: programmed cell death	2.52E-02
134	GO:0005983: starch catabolic process	2.52E-02
135	GO:0006508: proteolysis	2.63E-02
136	GO:0050826: response to freezing	2.76E-02
137	GO:0010075: regulation of meristem growth	2.76E-02
138	GO:0009767: photosynthetic electron transport chain	2.76E-02
139	GO:0010588: cotyledon vascular tissue pattern formation	2.76E-02
140	GO:2000012: regulation of auxin polar transport	2.76E-02
141	GO:0009785: blue light signaling pathway	2.76E-02
142	GO:0009867: jasmonic acid mediated signaling pathway	2.85E-02
143	GO:0009266: response to temperature stimulus	3.01E-02
144	GO:0009934: regulation of meristem structural organization	3.01E-02
145	GO:0010207: photosystem II assembly	3.01E-02
146	GO:0090351: seedling development	3.26E-02
147	GO:0070588: calcium ion transmembrane transport	3.26E-02
148	GO:0045892: negative regulation of transcription, DNA-templated	3.33E-02
149	GO:0006631: fatty acid metabolic process	3.39E-02
150	GO:0010025: wax biosynthetic process	3.53E-02
151	GO:0006071: glycerol metabolic process	3.53E-02
152	GO:0000162: tryptophan biosynthetic process	3.53E-02
153	GO:0009451: RNA modification	3.58E-02
154	GO:0051017: actin filament bundle assembly	3.79E-02
155	GO:0005992: trehalose biosynthetic process	3.79E-02
156	GO:0019953: sexual reproduction	4.07E-02
157	GO:0006418: tRNA aminoacylation for protein translation	4.07E-02
158	GO:0007166: cell surface receptor signaling pathway	4.11E-02
159	GO:0048511: rhythmic process	4.35E-02
160	GO:0010431: seed maturation	4.35E-02
161	GO:0061077: chaperone-mediated protein folding	4.35E-02
162	GO:0048278: vesicle docking	4.35E-02
163	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.64E-02
164	GO:0031348: negative regulation of defense response	4.64E-02
165	GO:0010082: regulation of root meristem growth	4.94E-02
166	GO:0009625: response to insect	4.94E-02
167	GO:0071215: cellular response to abscisic acid stimulus	4.94E-02
168	GO:0009686: gibberellin biosynthetic process	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
2	GO:0047661: amino-acid racemase activity	0.00E+00
3	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
4	GO:0015267: channel activity	0.00E+00
5	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
6	GO:0005201: extracellular matrix structural constituent	0.00E+00
7	GO:0004076: biotin synthase activity	0.00E+00
8	GO:0071633: dihydroceramidase activity	0.00E+00
9	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
10	GO:0004645: phosphorylase activity	6.72E-04
11	GO:0009374: biotin binding	6.72E-04
12	GO:0004832: valine-tRNA ligase activity	6.72E-04
13	GO:0010012: steroid 22-alpha hydroxylase activity	6.72E-04
14	GO:0000170: sphingosine hydroxylase activity	6.72E-04
15	GO:0050139: nicotinate-N-glucosyltransferase activity	6.72E-04
16	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	6.72E-04
17	GO:0004425: indole-3-glycerol-phosphate synthase activity	6.72E-04
18	GO:0008184: glycogen phosphorylase activity	6.72E-04
19	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	6.72E-04
20	GO:0004134: 4-alpha-glucanotransferase activity	6.72E-04
21	GO:0004176: ATP-dependent peptidase activity	7.29E-04
22	GO:0004614: phosphoglucomutase activity	1.45E-03
23	GO:0016788: hydrolase activity, acting on ester bonds	1.45E-03
24	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.45E-03
25	GO:0010296: prenylcysteine methylesterase activity	1.45E-03
26	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.45E-03
27	GO:0042284: sphingolipid delta-4 desaturase activity	1.45E-03
28	GO:0008493: tetracycline transporter activity	1.45E-03
29	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.45E-03
30	GO:0070330: aromatase activity	2.39E-03
31	GO:0017150: tRNA dihydrouridine synthase activity	2.39E-03
32	GO:0008237: metallopeptidase activity	2.48E-03
33	GO:0052689: carboxylic ester hydrolase activity	2.63E-03
34	GO:0016413: O-acetyltransferase activity	2.67E-03
35	GO:0003774: motor activity	3.41E-03
36	GO:0001872: (1->3)-beta-D-glucan binding	3.48E-03
37	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	3.48E-03
38	GO:0004222: metalloendopeptidase activity	4.60E-03
39	GO:0046556: alpha-L-arabinofuranosidase activity	4.69E-03
40	GO:0016279: protein-lysine N-methyltransferase activity	4.69E-03
41	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	4.69E-03
42	GO:0019199: transmembrane receptor protein kinase activity	4.69E-03
43	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.96E-03
44	GO:0018685: alkane 1-monooxygenase activity	6.03E-03
45	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	6.03E-03
46	GO:0003989: acetyl-CoA carboxylase activity	6.03E-03
47	GO:0016208: AMP binding	7.49E-03
48	GO:0080030: methyl indole-3-acetate esterase activity	7.49E-03
49	GO:1990714: hydroxyproline O-galactosyltransferase activity	7.49E-03
50	GO:0004709: MAP kinase kinase kinase activity	7.49E-03
51	GO:0003727: single-stranded RNA binding	7.52E-03
52	GO:0003700: transcription factor activity, sequence-specific DNA binding	7.86E-03
53	GO:0043621: protein self-association	8.42E-03
54	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	9.06E-03
55	GO:0016832: aldehyde-lyase activity	9.06E-03
56	GO:0004871: signal transducer activity	1.12E-02
57	GO:0004674: protein serine/threonine kinase activity	1.15E-02
58	GO:0016298: lipase activity	1.17E-02
59	GO:0003723: RNA binding	1.31E-02
60	GO:0000156: phosphorelay response regulator activity	1.35E-02
61	GO:0051015: actin filament binding	1.35E-02
62	GO:0008173: RNA methyltransferase activity	1.44E-02
63	GO:0003724: RNA helicase activity	1.44E-02
64	GO:0004650: polygalacturonase activity	1.56E-02
65	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.64E-02
66	GO:0004519: endonuclease activity	1.71E-02
67	GO:0102483: scopolin beta-glucosidase activity	2.03E-02
68	GO:0004805: trehalose-phosphatase activity	2.06E-02
69	GO:0008236: serine-type peptidase activity	2.13E-02
70	GO:0044183: protein binding involved in protein folding	2.29E-02
71	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.74E-02
72	GO:0005262: calcium channel activity	2.76E-02
73	GO:0009982: pseudouridine synthase activity	2.76E-02
74	GO:0015266: protein channel activity	2.76E-02
75	GO:0003697: single-stranded DNA binding	2.85E-02
76	GO:0008266: poly(U) RNA binding	3.01E-02
77	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.01E-02
78	GO:0008422: beta-glucosidase activity	3.11E-02
79	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.19E-02
80	GO:0003712: transcription cofactor activity	3.26E-02
81	GO:0004190: aspartic-type endopeptidase activity	3.26E-02
82	GO:0008146: sulfotransferase activity	3.26E-02
83	GO:0042803: protein homodimerization activity	3.49E-02
84	GO:0008017: microtubule binding	3.69E-02
85	GO:0051536: iron-sulfur cluster binding	3.79E-02
86	GO:0005528: FK506 binding	3.79E-02
87	GO:0046983: protein dimerization activity	4.03E-02
88	GO:0005345: purine nucleobase transmembrane transporter activity	4.07E-02
89	GO:0033612: receptor serine/threonine kinase binding	4.35E-02
90	GO:0008408: 3'-5' exonuclease activity	4.35E-02
91	GO:0004707: MAP kinase activity	4.35E-02
92	GO:0003924: GTPase activity	4.41E-02
93	GO:0004672: protein kinase activity	4.85E-02
94	GO:0009055: electron carrier activity	4.88E-02
95	GO:0030570: pectate lyase activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009534: chloroplast thylakoid	9.11E-04
3	GO:0009941: chloroplast envelope	1.05E-03
4	GO:0031357: integral component of chloroplast inner membrane	1.45E-03
5	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.45E-03
6	GO:0009507: chloroplast	1.49E-03
7	GO:0016459: myosin complex	2.00E-03
8	GO:0030139: endocytic vesicle	2.39E-03
9	GO:0009317: acetyl-CoA carboxylase complex	2.39E-03
10	GO:0009528: plastid inner membrane	2.39E-03
11	GO:0010319: stromule	2.48E-03
12	GO:0009508: plastid chromosome	3.02E-03
13	GO:0032585: multivesicular body membrane	3.48E-03
14	GO:0009570: chloroplast stroma	3.62E-03
15	GO:0009544: chloroplast ATP synthase complex	4.69E-03
16	GO:0009527: plastid outer membrane	4.69E-03
17	GO:0009654: photosystem II oxygen evolving complex	5.24E-03
18	GO:0015629: actin cytoskeleton	6.91E-03
19	GO:0009986: cell surface	1.07E-02
20	GO:0019898: extrinsic component of membrane	1.10E-02
21	GO:0009501: amyloplast	1.25E-02
22	GO:0046658: anchored component of plasma membrane	1.43E-02
23	GO:0009295: nucleoid	1.53E-02
24	GO:0010494: cytoplasmic stress granule	1.64E-02
25	GO:0000418: DNA-directed RNA polymerase IV complex	2.06E-02
26	GO:0009707: chloroplast outer membrane	2.25E-02
27	GO:0005884: actin filament	2.29E-02
28	GO:0090404: pollen tube tip	2.29E-02
29	GO:0009543: chloroplast thylakoid lumen	2.33E-02
30	GO:0005578: proteinaceous extracellular matrix	2.76E-02
31	GO:0030095: chloroplast photosystem II	3.01E-02
32	GO:0005886: plasma membrane	3.24E-02
33	GO:0031977: thylakoid lumen	3.39E-02
34	GO:0005856: cytoskeleton	4.12E-02
35	GO:0009532: plastid stroma	4.35E-02