co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G47390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017038: protein import	0.00E+00
2	GO:1905177: tracheary element differentiation	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0009734: auxin-activated signaling pathway	3.77E-09
6	GO:0009733: response to auxin	1.69E-08
7	GO:0046620: regulation of organ growth	9.03E-08
8	GO:0040008: regulation of growth	2.91E-06
9	GO:0007275: multicellular organism development	1.74E-05
10	GO:0009926: auxin polar transport	2.38E-04
11	GO:0010480: microsporocyte differentiation	3.07E-04
12	GO:0006659: phosphatidylserine biosynthetic process	3.07E-04
13	GO:0051247: positive regulation of protein metabolic process	3.07E-04
14	GO:1902458: positive regulation of stomatal opening	3.07E-04
15	GO:0015904: tetracycline transport	3.07E-04
16	GO:2000905: negative regulation of starch metabolic process	3.07E-04
17	GO:0010450: inflorescence meristem growth	3.07E-04
18	GO:0000305: response to oxygen radical	3.07E-04
19	GO:0000023: maltose metabolic process	3.07E-04
20	GO:0000025: maltose catabolic process	3.07E-04
21	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.07E-04
22	GO:0030198: extracellular matrix organization	3.07E-04
23	GO:0046520: sphingoid biosynthetic process	3.07E-04
24	GO:1900865: chloroplast RNA modification	5.47E-04
25	GO:0009629: response to gravity	6.71E-04
26	GO:1900871: chloroplast mRNA modification	6.71E-04
27	GO:1901959: positive regulation of cutin biosynthetic process	6.71E-04
28	GO:0045717: negative regulation of fatty acid biosynthetic process	6.71E-04
29	GO:0007154: cell communication	6.71E-04
30	GO:1900033: negative regulation of trichome patterning	6.71E-04
31	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.71E-04
32	GO:0006568: tryptophan metabolic process	6.71E-04
33	GO:0015824: proline transport	6.71E-04
34	GO:0005983: starch catabolic process	8.40E-04
35	GO:0010588: cotyledon vascular tissue pattern formation	9.50E-04
36	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.86E-04
37	GO:0048586: regulation of long-day photoperiodism, flowering	1.09E-03
38	GO:0010623: programmed cell death involved in cell development	1.09E-03
39	GO:0090153: regulation of sphingolipid biosynthetic process	1.09E-03
40	GO:0071398: cellular response to fatty acid	1.09E-03
41	GO:0045165: cell fate commitment	1.09E-03
42	GO:0033591: response to L-ascorbic acid	1.09E-03
43	GO:1904278: positive regulation of wax biosynthetic process	1.09E-03
44	GO:0010306: rhamnogalacturonan II biosynthetic process	1.56E-03
45	GO:0051513: regulation of monopolar cell growth	1.56E-03
46	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.56E-03
47	GO:0016556: mRNA modification	1.56E-03
48	GO:0006021: inositol biosynthetic process	2.09E-03
49	GO:0048629: trichome patterning	2.09E-03
50	GO:0010109: regulation of photosynthesis	2.09E-03
51	GO:0042274: ribosomal small subunit biogenesis	2.09E-03
52	GO:2000306: positive regulation of photomorphogenesis	2.09E-03
53	GO:0045723: positive regulation of fatty acid biosynthetic process	2.09E-03
54	GO:0010508: positive regulation of autophagy	2.09E-03
55	GO:0008295: spermidine biosynthetic process	2.09E-03
56	GO:0006749: glutathione metabolic process	2.09E-03
57	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.12E-03
58	GO:0016131: brassinosteroid metabolic process	2.67E-03
59	GO:0045038: protein import into chloroplast thylakoid membrane	2.67E-03
60	GO:0048497: maintenance of floral organ identity	2.67E-03
61	GO:1902183: regulation of shoot apical meristem development	2.67E-03
62	GO:0010158: abaxial cell fate specification	2.67E-03
63	GO:0080022: primary root development	2.70E-03
64	GO:0010182: sugar mediated signaling pathway	2.91E-03
65	GO:0048868: pollen tube development	2.91E-03
66	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.30E-03
67	GO:0009913: epidermal cell differentiation	3.30E-03
68	GO:0010405: arabinogalactan protein metabolic process	3.30E-03
69	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.30E-03
70	GO:0009959: negative gravitropism	3.30E-03
71	GO:0016554: cytidine to uridine editing	3.30E-03
72	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.30E-03
73	GO:0008654: phospholipid biosynthetic process	3.35E-03
74	GO:0009740: gibberellic acid mediated signaling pathway	3.57E-03
75	GO:0010583: response to cyclopentenone	3.83E-03
76	GO:0006458: 'de novo' protein folding	3.97E-03
77	GO:0030488: tRNA methylation	3.97E-03
78	GO:0010189: vitamin E biosynthetic process	3.97E-03
79	GO:0080086: stamen filament development	3.97E-03
80	GO:0042026: protein refolding	3.97E-03
81	GO:0009828: plant-type cell wall loosening	4.35E-03
82	GO:0030307: positive regulation of cell growth	4.68E-03
83	GO:0010161: red light signaling pathway	4.68E-03
84	GO:0006955: immune response	4.68E-03
85	GO:0048437: floral organ development	4.68E-03
86	GO:0009416: response to light stimulus	5.04E-03
87	GO:0006605: protein targeting	5.44E-03
88	GO:2000070: regulation of response to water deprivation	5.44E-03
89	GO:0010029: regulation of seed germination	5.48E-03
90	GO:0010100: negative regulation of photomorphogenesis	6.23E-03
91	GO:0010093: specification of floral organ identity	6.23E-03
92	GO:0010099: regulation of photomorphogenesis	6.23E-03
93	GO:0015996: chlorophyll catabolic process	6.23E-03
94	GO:0007186: G-protein coupled receptor signaling pathway	6.23E-03
95	GO:0009657: plastid organization	6.23E-03
96	GO:2000024: regulation of leaf development	7.07E-03
97	GO:0006783: heme biosynthetic process	7.07E-03
98	GO:0000373: Group II intron splicing	7.07E-03
99	GO:0009638: phototropism	7.94E-03
100	GO:0006865: amino acid transport	8.21E-03
101	GO:0009299: mRNA transcription	8.84E-03
102	GO:0048829: root cap development	8.84E-03
103	GO:0006949: syncytium formation	8.84E-03
104	GO:0009073: aromatic amino acid family biosynthetic process	9.79E-03
105	GO:0048229: gametophyte development	9.79E-03
106	GO:0000038: very long-chain fatty acid metabolic process	9.79E-03
107	GO:0009773: photosynthetic electron transport in photosystem I	9.79E-03
108	GO:0006415: translational termination	9.79E-03
109	GO:0045037: protein import into chloroplast stroma	1.08E-02
110	GO:0010628: positive regulation of gene expression	1.18E-02
111	GO:0006006: glucose metabolic process	1.18E-02
112	GO:0010075: regulation of meristem growth	1.18E-02
113	GO:0009725: response to hormone	1.18E-02
114	GO:2000012: regulation of auxin polar transport	1.18E-02
115	GO:0010102: lateral root morphogenesis	1.18E-02
116	GO:0005975: carbohydrate metabolic process	1.25E-02
117	GO:0010207: photosystem II assembly	1.28E-02
118	GO:0009887: animal organ morphogenesis	1.28E-02
119	GO:0009934: regulation of meristem structural organization	1.28E-02
120	GO:0009826: unidimensional cell growth	1.28E-02
121	GO:0009933: meristem structural organization	1.28E-02
122	GO:0010030: positive regulation of seed germination	1.39E-02
123	GO:0070588: calcium ion transmembrane transport	1.39E-02
124	GO:0009664: plant-type cell wall organization	1.40E-02
125	GO:0019762: glucosinolate catabolic process	1.50E-02
126	GO:0009944: polarity specification of adaxial/abaxial axis	1.62E-02
127	GO:0080147: root hair cell development	1.62E-02
128	GO:0005992: trehalose biosynthetic process	1.62E-02
129	GO:0010187: negative regulation of seed germination	1.62E-02
130	GO:0009909: regulation of flower development	1.66E-02
131	GO:0003333: amino acid transmembrane transport	1.86E-02
132	GO:0016998: cell wall macromolecule catabolic process	1.86E-02
133	GO:0048511: rhythmic process	1.86E-02
134	GO:0010431: seed maturation	1.86E-02
135	GO:0061077: chaperone-mediated protein folding	1.86E-02
136	GO:0009693: ethylene biosynthetic process	2.11E-02
137	GO:0009686: gibberellin biosynthetic process	2.11E-02
138	GO:0009624: response to nematode	2.14E-02
139	GO:0006396: RNA processing	2.20E-02
140	GO:0010089: xylem development	2.24E-02
141	GO:0009742: brassinosteroid mediated signaling pathway	2.27E-02
142	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.37E-02
143	GO:0010087: phloem or xylem histogenesis	2.50E-02
144	GO:0048653: anther development	2.50E-02
145	GO:0042631: cellular response to water deprivation	2.50E-02
146	GO:0042335: cuticle development	2.50E-02
147	GO:0009741: response to brassinosteroid	2.64E-02
148	GO:0010268: brassinosteroid homeostasis	2.64E-02
149	GO:0010154: fruit development	2.64E-02
150	GO:0010305: leaf vascular tissue pattern formation	2.64E-02
151	GO:0048544: recognition of pollen	2.78E-02
152	GO:0042752: regulation of circadian rhythm	2.78E-02
153	GO:0009646: response to absence of light	2.78E-02
154	GO:0009845: seed germination	2.90E-02
155	GO:0048825: cotyledon development	2.92E-02
156	GO:0009851: auxin biosynthetic process	2.92E-02
157	GO:0009791: post-embryonic development	2.92E-02
158	GO:0000302: response to reactive oxygen species	3.07E-02
159	GO:0010090: trichome morphogenesis	3.36E-02
160	GO:1901657: glycosyl compound metabolic process	3.36E-02
161	GO:0006464: cellular protein modification process	3.52E-02
162	GO:0010027: thylakoid membrane organization	3.98E-02
163	GO:0006470: protein dephosphorylation	4.22E-02
164	GO:0015995: chlorophyll biosynthetic process	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0010276: phytol kinase activity	0.00E+00
2	GO:0005201: extracellular matrix structural constituent	0.00E+00
3	GO:0005363: maltose transmembrane transporter activity	0.00E+00
4	GO:0004462: lactoylglutathione lyase activity	1.39E-04
5	GO:0004134: 4-alpha-glucanotransferase activity	3.07E-04
6	GO:0008158: hedgehog receptor activity	3.07E-04
7	GO:0008395: steroid hydroxylase activity	3.07E-04
8	GO:0005080: protein kinase C binding	3.07E-04
9	GO:0000170: sphingosine hydroxylase activity	3.07E-04
10	GO:0050139: nicotinate-N-glucosyltransferase activity	3.07E-04
11	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.07E-04
12	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.07E-04
13	GO:0042834: peptidoglycan binding	3.07E-04
14	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.07E-04
15	GO:0010313: phytochrome binding	3.07E-04
16	GO:0017118: lipoyltransferase activity	6.71E-04
17	GO:0004362: glutathione-disulfide reductase activity	6.71E-04
18	GO:0043425: bHLH transcription factor binding	6.71E-04
19	GO:0004766: spermidine synthase activity	6.71E-04
20	GO:0042284: sphingolipid delta-4 desaturase activity	6.71E-04
21	GO:0008493: tetracycline transporter activity	6.71E-04
22	GO:0004512: inositol-3-phosphate synthase activity	6.71E-04
23	GO:0015193: L-proline transmembrane transporter activity	1.09E-03
24	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.09E-03
25	GO:0005528: FK506 binding	1.47E-03
26	GO:0016149: translation release factor activity, codon specific	1.56E-03
27	GO:0016688: L-ascorbate peroxidase activity	3.30E-03
28	GO:0004605: phosphatidate cytidylyltransferase activity	3.30E-03
29	GO:0080030: methyl indole-3-acetate esterase activity	3.30E-03
30	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.30E-03
31	GO:0004709: MAP kinase kinase kinase activity	3.30E-03
32	GO:0004130: cytochrome-c peroxidase activity	3.30E-03
33	GO:0008173: RNA methyltransferase activity	6.23E-03
34	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.07E-03
35	GO:0003747: translation release factor activity	7.07E-03
36	GO:0004805: trehalose-phosphatase activity	8.84E-03
37	GO:0030234: enzyme regulator activity	8.84E-03
38	GO:0004712: protein serine/threonine/tyrosine kinase activity	9.38E-03
39	GO:0044183: protein binding involved in protein folding	9.79E-03
40	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.08E-02
41	GO:0005262: calcium channel activity	1.18E-02
42	GO:0008266: poly(U) RNA binding	1.28E-02
43	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.30E-02
44	GO:0016788: hydrolase activity, acting on ester bonds	1.38E-02
45	GO:0008146: sulfotransferase activity	1.39E-02
46	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.50E-02
47	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.50E-02
48	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.50E-02
49	GO:0031418: L-ascorbic acid binding	1.62E-02
50	GO:0015171: amino acid transmembrane transporter activity	1.66E-02
51	GO:0005345: purine nucleobase transmembrane transporter activity	1.74E-02
52	GO:0033612: receptor serine/threonine kinase binding	1.86E-02
53	GO:0003964: RNA-directed DNA polymerase activity	1.86E-02
54	GO:0003727: single-stranded RNA binding	2.24E-02
55	GO:0008514: organic anion transmembrane transporter activity	2.24E-02
56	GO:0004871: signal transducer activity	2.36E-02
57	GO:0004519: endonuclease activity	3.21E-02
58	GO:0016759: cellulose synthase activity	3.52E-02
59	GO:0004721: phosphoprotein phosphatase activity	4.48E-02
60	GO:0102483: scopolin beta-glucosidase activity	4.48E-02
61	GO:0004674: protein serine/threonine kinase activity	4.96E-02
62	GO:0015238: drug transmembrane transporter activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	5.88E-04
2	GO:0009507: chloroplast	7.50E-04
3	GO:0009528: plastid inner membrane	1.09E-03
4	GO:0019897: extrinsic component of plasma membrane	1.09E-03
5	GO:0009527: plastid outer membrane	2.09E-03
6	GO:0010319: stromule	4.62E-03
7	GO:0009543: chloroplast thylakoid lumen	5.13E-03
8	GO:0009501: amyloplast	5.44E-03
9	GO:0010494: cytoplasmic stress granule	7.07E-03
10	GO:0009535: chloroplast thylakoid membrane	9.87E-03
11	GO:0031225: anchored component of membrane	1.09E-02
12	GO:0009508: plastid chromosome	1.18E-02
13	GO:0030095: chloroplast photosystem II	1.28E-02
14	GO:0005886: plasma membrane	1.52E-02
15	GO:0009654: photosystem II oxygen evolving complex	1.74E-02
16	GO:0009532: plastid stroma	1.86E-02
17	GO:0009941: chloroplast envelope	1.99E-02
18	GO:0009534: chloroplast thylakoid	2.36E-02
19	GO:0019898: extrinsic component of membrane	2.92E-02
20	GO:0043231: intracellular membrane-bounded organelle	3.26E-02
21	GO:0009295: nucleoid	3.67E-02
22	GO:0030529: intracellular ribonucleoprotein complex	3.98E-02
23	GO:0000932: P-body	3.98E-02
24	GO:0000151: ubiquitin ligase complex	4.81E-02
25	GO:0009707: chloroplast outer membrane	4.81E-02
26	GO:0046658: anchored component of plasma membrane	4.87E-02