Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G46690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006907: pinocytosis0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0045014: negative regulation of transcription by glucose0.00E+00
4GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
5GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
6GO:0080127: fruit septum development0.00E+00
7GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
8GO:0009734: auxin-activated signaling pathway5.63E-09
9GO:0009733: response to auxin1.40E-08
10GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.61E-05
11GO:0010583: response to cyclopentenone1.08E-04
12GO:0046620: regulation of organ growth1.44E-04
13GO:0009926: auxin polar transport1.66E-04
14GO:0009686: gibberellin biosynthetic process2.90E-04
15GO:0048829: root cap development4.04E-04
16GO:0040008: regulation of growth5.09E-04
17GO:0048497: maintenance of floral organ identity6.27E-04
18GO:0015904: tetracycline transport1.01E-03
19GO:0051013: microtubule severing1.01E-03
20GO:0034757: negative regulation of iron ion transport1.01E-03
21GO:0010726: positive regulation of hydrogen peroxide metabolic process1.01E-03
22GO:0006438: valyl-tRNA aminoacylation1.01E-03
23GO:0032958: inositol phosphate biosynthetic process1.01E-03
24GO:0046520: sphingoid biosynthetic process1.01E-03
25GO:0010480: microsporocyte differentiation1.01E-03
26GO:0030488: tRNA methylation1.14E-03
27GO:0006351: transcription, DNA-templated1.19E-03
28GO:0009736: cytokinin-activated signaling pathway1.46E-03
29GO:0000105: histidine biosynthetic process1.82E-03
30GO:0000160: phosphorelay signal transduction system1.97E-03
31GO:0006423: cysteinyl-tRNA aminoacylation2.22E-03
32GO:0001736: establishment of planar polarity2.22E-03
33GO:0080009: mRNA methylation2.22E-03
34GO:0009786: regulation of asymmetric cell division2.22E-03
35GO:0031648: protein destabilization2.22E-03
36GO:2000123: positive regulation of stomatal complex development2.22E-03
37GO:0010024: phytochromobilin biosynthetic process2.22E-03
38GO:0043039: tRNA aminoacylation2.22E-03
39GO:0061062: regulation of nematode larval development2.22E-03
40GO:0010271: regulation of chlorophyll catabolic process2.22E-03
41GO:0000373: Group II intron splicing2.69E-03
42GO:0009958: positive gravitropism3.04E-03
43GO:0071398: cellular response to fatty acid3.68E-03
44GO:0006065: UDP-glucuronate biosynthetic process3.68E-03
45GO:0030029: actin filament-based process3.68E-03
46GO:0048575: short-day photoperiodism, flowering3.68E-03
47GO:0045910: negative regulation of DNA recombination3.68E-03
48GO:0090506: axillary shoot meristem initiation3.68E-03
49GO:0033591: response to L-ascorbic acid3.68E-03
50GO:1902448: positive regulation of shade avoidance3.68E-03
51GO:0080117: secondary growth3.68E-03
52GO:0010226: response to lithium ion3.68E-03
53GO:0006949: syncytium formation3.73E-03
54GO:0006782: protoporphyrinogen IX biosynthetic process3.73E-03
55GO:0009826: unidimensional cell growth4.56E-03
56GO:0009658: chloroplast organization4.92E-03
57GO:0010582: floral meristem determinacy4.97E-03
58GO:0009828: plant-type cell wall loosening5.12E-03
59GO:0010321: regulation of vegetative phase change5.38E-03
60GO:0010371: regulation of gibberellin biosynthetic process5.38E-03
61GO:0006020: inositol metabolic process5.38E-03
62GO:0051513: regulation of monopolar cell growth5.38E-03
63GO:0051639: actin filament network formation5.38E-03
64GO:0034059: response to anoxia5.38E-03
65GO:0010239: chloroplast mRNA processing5.38E-03
66GO:0007276: gamete generation5.38E-03
67GO:0006424: glutamyl-tRNA aminoacylation5.38E-03
68GO:0009664: plant-type cell wall organization5.55E-03
69GO:0010588: cotyledon vascular tissue pattern formation5.67E-03
70GO:0009887: animal organ morphogenesis6.41E-03
71GO:0009825: multidimensional cell growth7.20E-03
72GO:0009956: radial pattern formation7.29E-03
73GO:0009755: hormone-mediated signaling pathway7.29E-03
74GO:0048629: trichome patterning7.29E-03
75GO:0051764: actin crosslink formation7.29E-03
76GO:0009765: photosynthesis, light harvesting7.29E-03
77GO:2000038: regulation of stomatal complex development7.29E-03
78GO:0042991: transcription factor import into nucleus7.29E-03
79GO:0006021: inositol biosynthetic process7.29E-03
80GO:0071555: cell wall organization7.40E-03
81GO:0009416: response to light stimulus7.60E-03
82GO:0051017: actin filament bundle assembly8.95E-03
83GO:0045487: gibberellin catabolic process9.41E-03
84GO:0009107: lipoate biosynthetic process9.41E-03
85GO:0016123: xanthophyll biosynthetic process9.41E-03
86GO:0010438: cellular response to sulfur starvation9.41E-03
87GO:0010158: abaxial cell fate specification9.41E-03
88GO:0010375: stomatal complex patterning9.41E-03
89GO:0080110: sporopollenin biosynthetic process9.41E-03
90GO:0016131: brassinosteroid metabolic process9.41E-03
91GO:0009696: salicylic acid metabolic process9.41E-03
92GO:0016120: carotene biosynthetic process9.41E-03
93GO:0010311: lateral root formation9.68E-03
94GO:0009740: gibberellic acid mediated signaling pathway9.70E-03
95GO:0006418: tRNA aminoacylation for protein translation9.91E-03
96GO:0009624: response to nematode1.06E-02
97GO:0003333: amino acid transmembrane transport1.09E-02
98GO:0045892: negative regulation of transcription, DNA-templated1.10E-02
99GO:0006865: amino acid transport1.16E-02
100GO:0010942: positive regulation of cell death1.17E-02
101GO:0010405: arabinogalactan protein metabolic process1.17E-02
102GO:0009913: epidermal cell differentiation1.17E-02
103GO:0010358: leaf shaping1.17E-02
104GO:0016554: cytidine to uridine editing1.17E-02
105GO:1902456: regulation of stomatal opening1.17E-02
106GO:0048831: regulation of shoot system development1.17E-02
107GO:0003006: developmental process involved in reproduction1.17E-02
108GO:0018258: protein O-linked glycosylation via hydroxyproline1.17E-02
109GO:0006355: regulation of transcription, DNA-templated1.22E-02
110GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.31E-02
111GO:0071215: cellular response to abscisic acid stimulus1.31E-02
112GO:0031930: mitochondria-nucleus signaling pathway1.42E-02
113GO:0009861: jasmonic acid and ethylene-dependent systemic resistance1.42E-02
114GO:0010019: chloroplast-nucleus signaling pathway1.42E-02
115GO:0006694: steroid biosynthetic process1.42E-02
116GO:0009942: longitudinal axis specification1.42E-02
117GO:0048509: regulation of meristem development1.42E-02
118GO:0010091: trichome branching1.43E-02
119GO:0042127: regulation of cell proliferation1.43E-02
120GO:0030001: metal ion transport1.46E-02
121GO:0016042: lipid catabolic process1.52E-02
122GO:0016117: carotenoid biosynthetic process1.55E-02
123GO:0010087: phloem or xylem histogenesis1.68E-02
124GO:0000082: G1/S transition of mitotic cell cycle1.69E-02
125GO:0009610: response to symbiotic fungus1.69E-02
126GO:1900056: negative regulation of leaf senescence1.69E-02
127GO:0030497: fatty acid elongation1.69E-02
128GO:0010050: vegetative phase change1.69E-02
129GO:0010098: suspensor development1.69E-02
130GO:0048437: floral organ development1.69E-02
131GO:0010444: guard mother cell differentiation1.69E-02
132GO:0030307: positive regulation of cell growth1.69E-02
133GO:0010305: leaf vascular tissue pattern formation1.81E-02
134GO:0009741: response to brassinosteroid1.81E-02
135GO:0006468: protein phosphorylation1.95E-02
136GO:2000070: regulation of response to water deprivation1.97E-02
137GO:0010492: maintenance of shoot apical meristem identity1.97E-02
138GO:0006402: mRNA catabolic process1.97E-02
139GO:0010439: regulation of glucosinolate biosynthetic process1.97E-02
140GO:0009850: auxin metabolic process1.97E-02
141GO:0009819: drought recovery1.97E-02
142GO:0009704: de-etiolation1.97E-02
143GO:0048825: cotyledon development2.09E-02
144GO:0016132: brassinosteroid biosynthetic process2.24E-02
145GO:0071554: cell wall organization or biogenesis2.24E-02
146GO:0007389: pattern specification process2.27E-02
147GO:0071482: cellular response to light stimulus2.27E-02
148GO:0007186: G-protein coupled receptor signaling pathway2.27E-02
149GO:0048574: long-day photoperiodism, flowering2.27E-02
150GO:0032544: plastid translation2.27E-02
151GO:0007165: signal transduction2.47E-02
152GO:0048589: developmental growth2.58E-02
153GO:0009056: catabolic process2.58E-02
154GO:0051865: protein autoubiquitination2.58E-02
155GO:0046916: cellular transition metal ion homeostasis2.58E-02
156GO:0048507: meristem development2.58E-02
157GO:0009639: response to red or far red light2.72E-02
158GO:0009909: regulation of flower development2.83E-02
159GO:0009739: response to gibberellin2.87E-02
160GO:0016573: histone acetylation2.91E-02
161GO:0009638: phototropism2.91E-02
162GO:0006779: porphyrin-containing compound biosynthetic process2.91E-02
163GO:0042761: very long-chain fatty acid biosynthetic process2.91E-02
164GO:0009098: leucine biosynthetic process2.91E-02
165GO:0010018: far-red light signaling pathway2.91E-02
166GO:0016571: histone methylation2.91E-02
167GO:1900865: chloroplast RNA modification2.91E-02
168GO:0048316: seed development3.20E-02
169GO:0009641: shade avoidance3.25E-02
170GO:0006298: mismatch repair3.25E-02
171GO:0010192: mucilage biosynthetic process3.25E-02
172GO:0031627: telomeric loop formation3.25E-02
173GO:0009299: mRNA transcription3.25E-02
174GO:0009870: defense response signaling pathway, resistance gene-dependent3.25E-02
175GO:0006535: cysteine biosynthetic process from serine3.25E-02
176GO:0009793: embryo development ending in seed dormancy3.26E-02
177GO:0016567: protein ubiquitination3.55E-02
178GO:0009750: response to fructose3.60E-02
179GO:0048229: gametophyte development3.60E-02
180GO:0048765: root hair cell differentiation3.60E-02
181GO:0009682: induced systemic resistance3.60E-02
182GO:0008285: negative regulation of cell proliferation3.60E-02
183GO:0015995: chlorophyll biosynthetic process3.82E-02
184GO:0048573: photoperiodism, flowering3.82E-02
185GO:0006790: sulfur compound metabolic process3.97E-02
186GO:0012501: programmed cell death3.97E-02
187GO:0010152: pollen maturation3.97E-02
188GO:0005983: starch catabolic process3.97E-02
189GO:0010105: negative regulation of ethylene-activated signaling pathway3.97E-02
190GO:0045037: protein import into chloroplast stroma3.97E-02
191GO:0007275: multicellular organism development4.22E-02
192GO:0009817: defense response to fungus, incompatible interaction4.23E-02
193GO:0009691: cytokinin biosynthetic process4.35E-02
194GO:2000028: regulation of photoperiodism, flowering4.35E-02
195GO:0010075: regulation of meristem growth4.35E-02
196GO:0009725: response to hormone4.35E-02
197GO:2000012: regulation of auxin polar transport4.35E-02
198GO:0010628: positive regulation of gene expression4.35E-02
199GO:0010102: lateral root morphogenesis4.35E-02
200GO:0009785: blue light signaling pathway4.35E-02
201GO:0009832: plant-type cell wall biogenesis4.44E-02
202GO:0010223: secondary shoot formation4.73E-02
203GO:0010540: basipetal auxin transport4.73E-02
204GO:0009266: response to temperature stimulus4.73E-02
205GO:0009934: regulation of meristem structural organization4.73E-02
206GO:0006302: double-strand break repair4.73E-02
207GO:0048467: gynoecium development4.73E-02
208GO:0010207: photosystem II assembly4.73E-02
209GO:0010020: chloroplast fission4.73E-02
210GO:0009933: meristem structural organization4.73E-02
RankGO TermAdjusted P value
1GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor0.00E+00
2GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
3GO:0009899: ent-kaurene synthase activity0.00E+00
4GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
5GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity0.00E+00
6GO:0052834: inositol monophosphate phosphatase activity0.00E+00
7GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity0.00E+00
8GO:0071633: dihydroceramidase activity0.00E+00
9GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
10GO:0045435: lycopene epsilon cyclase activity0.00E+00
11GO:0004401: histidinol-phosphatase activity0.00E+00
12GO:0008805: carbon-monoxide oxygenase activity4.16E-05
13GO:0001872: (1->3)-beta-D-glucan binding2.58E-04
14GO:0010011: auxin binding4.24E-04
15GO:0052381: tRNA dimethylallyltransferase activity1.01E-03
16GO:0033857: diphosphoinositol-pentakisphosphate kinase activity1.01E-03
17GO:0010347: L-galactose-1-phosphate phosphatase activity1.01E-03
18GO:0010012: steroid 22-alpha hydroxylase activity1.01E-03
19GO:0000170: sphingosine hydroxylase activity1.01E-03
20GO:0050139: nicotinate-N-glucosyltransferase activity1.01E-03
21GO:0000829: inositol heptakisphosphate kinase activity1.01E-03
22GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity1.01E-03
23GO:0047259: glucomannan 4-beta-mannosyltransferase activity1.01E-03
24GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity1.01E-03
25GO:0005227: calcium activated cation channel activity1.01E-03
26GO:0004818: glutamate-tRNA ligase activity1.01E-03
27GO:0008568: microtubule-severing ATPase activity1.01E-03
28GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity1.01E-03
29GO:0000828: inositol hexakisphosphate kinase activity1.01E-03
30GO:0004832: valine-tRNA ligase activity1.01E-03
31GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity1.01E-03
32GO:0004871: signal transducer activity1.30E-03
33GO:0009884: cytokinin receptor activity2.22E-03
34GO:0050017: L-3-cyanoalanine synthase activity2.22E-03
35GO:0017118: lipoyltransferase activity2.22E-03
36GO:0003852: 2-isopropylmalate synthase activity2.22E-03
37GO:0045543: gibberellin 2-beta-dioxygenase activity2.22E-03
38GO:0043425: bHLH transcription factor binding2.22E-03
39GO:0010296: prenylcysteine methylesterase activity2.22E-03
40GO:0016415: octanoyltransferase activity2.22E-03
41GO:0004047: aminomethyltransferase activity2.22E-03
42GO:0052832: inositol monophosphate 3-phosphatase activity2.22E-03
43GO:0004817: cysteine-tRNA ligase activity2.22E-03
44GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity2.22E-03
45GO:0004109: coproporphyrinogen oxidase activity2.22E-03
46GO:0042284: sphingolipid delta-4 desaturase activity2.22E-03
47GO:0019156: isoamylase activity2.22E-03
48GO:0008934: inositol monophosphate 1-phosphatase activity2.22E-03
49GO:0008493: tetracycline transporter activity2.22E-03
50GO:0052833: inositol monophosphate 4-phosphatase activity2.22E-03
51GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity2.22E-03
52GO:0050736: O-malonyltransferase activity2.22E-03
53GO:0005034: osmosensor activity3.68E-03
54GO:0003979: UDP-glucose 6-dehydrogenase activity3.68E-03
55GO:0016707: gibberellin 3-beta-dioxygenase activity3.68E-03
56GO:0003913: DNA photolyase activity3.68E-03
57GO:0003700: transcription factor activity, sequence-specific DNA binding3.82E-03
58GO:0051015: actin filament binding4.73E-03
59GO:0000156: phosphorelay response regulator activity4.73E-03
60GO:0016788: hydrolase activity, acting on ester bonds5.10E-03
61GO:0080031: methyl salicylate esterase activity5.38E-03
62GO:0045544: gibberellin 20-oxidase activity5.38E-03
63GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity5.38E-03
64GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed7.29E-03
65GO:0010328: auxin influx transmembrane transporter activity7.29E-03
66GO:0019199: transmembrane receptor protein kinase activity7.29E-03
67GO:0052689: carboxylic ester hydrolase activity9.15E-03
68GO:0005471: ATP:ADP antiporter activity9.41E-03
69GO:0070696: transmembrane receptor protein serine/threonine kinase binding9.41E-03
70GO:0008725: DNA-3-methyladenine glycosylase activity9.41E-03
71GO:0005096: GTPase activator activity9.68E-03
72GO:0005345: purine nucleobase transmembrane transporter activity9.91E-03
73GO:0033612: receptor serine/threonine kinase binding1.09E-02
74GO:0030983: mismatched DNA binding1.17E-02
75GO:0080030: methyl indole-3-acetate esterase activity1.17E-02
76GO:1990714: hydroxyproline O-galactosyltransferase activity1.17E-02
77GO:0004709: MAP kinase kinase kinase activity1.17E-02
78GO:0004556: alpha-amylase activity1.17E-02
79GO:0004674: protein serine/threonine kinase activity1.28E-02
80GO:0030570: pectate lyase activity1.31E-02
81GO:0019900: kinase binding1.42E-02
82GO:0004124: cysteine synthase activity1.42E-02
83GO:0051753: mannan synthase activity1.42E-02
84GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.42E-02
85GO:0016832: aldehyde-lyase activity1.42E-02
86GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.45E-02
87GO:0004812: aminoacyl-tRNA ligase activity1.55E-02
88GO:0009881: photoreceptor activity1.69E-02
89GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity1.81E-02
90GO:0043621: protein self-association1.89E-02
91GO:0050662: coenzyme binding1.95E-02
92GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water2.27E-02
93GO:0046914: transition metal ion binding2.27E-02
94GO:0008173: RNA methyltransferase activity2.27E-02
95GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity2.58E-02
96GO:0008017: microtubule binding2.60E-02
97GO:0043565: sequence-specific DNA binding2.66E-02
98GO:0016759: cellulose synthase activity2.72E-02
99GO:0015171: amino acid transmembrane transporter activity2.83E-02
100GO:0005200: structural constituent of cytoskeleton2.89E-02
101GO:0009672: auxin:proton symporter activity2.91E-02
102GO:0016413: O-acetyltransferase activity3.07E-02
103GO:0004805: trehalose-phosphatase activity3.25E-02
104GO:0004673: protein histidine kinase activity3.25E-02
105GO:0042803: protein homodimerization activity3.29E-02
106GO:0004722: protein serine/threonine phosphatase activity3.54E-02
107GO:0003691: double-stranded telomeric DNA binding3.60E-02
108GO:0030247: polysaccharide binding3.82E-02
109GO:0000049: tRNA binding3.97E-02
110GO:0004672: protein kinase activity4.22E-02
111GO:0000155: phosphorelay sensor kinase activity4.35E-02
112GO:0003725: double-stranded RNA binding4.35E-02
113GO:0010329: auxin efflux transmembrane transporter activity4.35E-02
114GO:0005515: protein binding4.59E-02
115GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.73E-02
116GO:0009055: electron carrier activity4.81E-02
117GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.88E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0000408: EKC/KEOPS complex0.00E+00
3GO:0009537: proplastid0.00E+00
4GO:0000791: euchromatin1.01E-03
5GO:0009986: cell surface1.46E-03
6GO:0009513: etioplast2.22E-03
7GO:0031357: integral component of chloroplast inner membrane2.22E-03
8GO:0009569: chloroplast starch grain2.22E-03
9GO:0030870: Mre11 complex2.22E-03
10GO:0005886: plasma membrane3.20E-03
11GO:0019897: extrinsic component of plasma membrane3.68E-03
12GO:0009509: chromoplast3.68E-03
13GO:0030139: endocytic vesicle3.68E-03
14GO:0005884: actin filament4.33E-03
15GO:0009531: secondary cell wall5.38E-03
16GO:0032585: multivesicular body membrane5.38E-03
17GO:0032432: actin filament bundle5.38E-03
18GO:0000795: synaptonemal complex9.41E-03
19GO:0046658: anchored component of plasma membrane1.18E-02
20GO:0015629: actin cytoskeleton1.31E-02
21GO:0009501: amyloplast1.97E-02
22GO:0005874: microtubule2.12E-02
23GO:0000783: nuclear telomere cap complex2.27E-02
24GO:0009507: chloroplast2.43E-02
25GO:0005578: proteinaceous extracellular matrix4.35E-02
26GO:0030095: chloroplast photosystem II4.73E-02
27GO:0031225: anchored component of membrane4.76E-02
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Gene type



Gene DE type