GO Enrichment Analysis of Co-expressed Genes with
AT5G46290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0018131: oxazole or thiazole biosynthetic process | 0.00E+00 |
| 4 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 5 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.97E-07 |
| 6 | GO:2001141: regulation of RNA biosynthetic process | 1.83E-06 |
| 7 | GO:0009658: chloroplast organization | 4.16E-06 |
| 8 | GO:1901259: chloroplast rRNA processing | 1.32E-05 |
| 9 | GO:0071482: cellular response to light stimulus | 3.09E-05 |
| 10 | GO:0009443: pyridoxal 5'-phosphate salvage | 5.79E-05 |
| 11 | GO:1904966: positive regulation of vitamin E biosynthetic process | 5.79E-05 |
| 12 | GO:1904964: positive regulation of phytol biosynthetic process | 5.79E-05 |
| 13 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 5.79E-05 |
| 14 | GO:0051775: response to redox state | 5.79E-05 |
| 15 | GO:0019684: photosynthesis, light reaction | 6.78E-05 |
| 16 | GO:0006352: DNA-templated transcription, initiation | 6.78E-05 |
| 17 | GO:1904143: positive regulation of carotenoid biosynthetic process | 1.41E-04 |
| 18 | GO:0060359: response to ammonium ion | 1.41E-04 |
| 19 | GO:0006954: inflammatory response | 2.40E-04 |
| 20 | GO:0043157: response to cation stress | 2.40E-04 |
| 21 | GO:0005977: glycogen metabolic process | 2.40E-04 |
| 22 | GO:0009226: nucleotide-sugar biosynthetic process | 3.49E-04 |
| 23 | GO:0006107: oxaloacetate metabolic process | 3.49E-04 |
| 24 | GO:0016556: mRNA modification | 3.49E-04 |
| 25 | GO:0032502: developmental process | 4.13E-04 |
| 26 | GO:0006734: NADH metabolic process | 4.66E-04 |
| 27 | GO:0010021: amylopectin biosynthetic process | 4.66E-04 |
| 28 | GO:0006109: regulation of carbohydrate metabolic process | 4.66E-04 |
| 29 | GO:0045038: protein import into chloroplast thylakoid membrane | 5.92E-04 |
| 30 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 7.24E-04 |
| 31 | GO:0050665: hydrogen peroxide biosynthetic process | 7.24E-04 |
| 32 | GO:0009959: negative gravitropism | 7.24E-04 |
| 33 | GO:0032973: amino acid export | 7.24E-04 |
| 34 | GO:0009228: thiamine biosynthetic process | 7.24E-04 |
| 35 | GO:0009854: oxidative photosynthetic carbon pathway | 8.63E-04 |
| 36 | GO:0009395: phospholipid catabolic process | 1.01E-03 |
| 37 | GO:0043090: amino acid import | 1.01E-03 |
| 38 | GO:0015979: photosynthesis | 1.13E-03 |
| 39 | GO:0048564: photosystem I assembly | 1.16E-03 |
| 40 | GO:0042255: ribosome assembly | 1.16E-03 |
| 41 | GO:0006353: DNA-templated transcription, termination | 1.16E-03 |
| 42 | GO:0010204: defense response signaling pathway, resistance gene-independent | 1.32E-03 |
| 43 | GO:0017004: cytochrome complex assembly | 1.32E-03 |
| 44 | GO:0080144: amino acid homeostasis | 1.48E-03 |
| 45 | GO:0006486: protein glycosylation | 1.52E-03 |
| 46 | GO:0006096: glycolytic process | 1.79E-03 |
| 47 | GO:0043086: negative regulation of catalytic activity | 1.79E-03 |
| 48 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.02E-03 |
| 49 | GO:0043085: positive regulation of catalytic activity | 2.02E-03 |
| 50 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.02E-03 |
| 51 | GO:0055114: oxidation-reduction process | 2.33E-03 |
| 52 | GO:0006108: malate metabolic process | 2.41E-03 |
| 53 | GO:0009767: photosynthetic electron transport chain | 2.41E-03 |
| 54 | GO:0010207: photosystem II assembly | 2.62E-03 |
| 55 | GO:0009969: xyloglucan biosynthetic process | 2.82E-03 |
| 56 | GO:0007017: microtubule-based process | 3.49E-03 |
| 57 | GO:0010431: seed maturation | 3.72E-03 |
| 58 | GO:0006730: one-carbon metabolic process | 3.95E-03 |
| 59 | GO:0009686: gibberellin biosynthetic process | 4.20E-03 |
| 60 | GO:0008380: RNA splicing | 4.38E-03 |
| 61 | GO:0008033: tRNA processing | 4.95E-03 |
| 62 | GO:0006662: glycerol ether metabolic process | 5.21E-03 |
| 63 | GO:0048868: pollen tube development | 5.21E-03 |
| 64 | GO:0009741: response to brassinosteroid | 5.21E-03 |
| 65 | GO:0010268: brassinosteroid homeostasis | 5.21E-03 |
| 66 | GO:0009646: response to absence of light | 5.48E-03 |
| 67 | GO:0019252: starch biosynthetic process | 5.75E-03 |
| 68 | GO:0009791: post-embryonic development | 5.75E-03 |
| 69 | GO:0016132: brassinosteroid biosynthetic process | 6.02E-03 |
| 70 | GO:0009630: gravitropism | 6.31E-03 |
| 71 | GO:0016125: sterol metabolic process | 6.88E-03 |
| 72 | GO:0010027: thylakoid membrane organization | 7.78E-03 |
| 73 | GO:0006974: cellular response to DNA damage stimulus | 8.40E-03 |
| 74 | GO:0009627: systemic acquired resistance | 8.40E-03 |
| 75 | GO:0015995: chlorophyll biosynthetic process | 8.71E-03 |
| 76 | GO:0018298: protein-chromophore linkage | 9.36E-03 |
| 77 | GO:0009832: plant-type cell wall biogenesis | 9.69E-03 |
| 78 | GO:0006499: N-terminal protein myristoylation | 1.00E-02 |
| 79 | GO:0016042: lipid catabolic process | 1.01E-02 |
| 80 | GO:0009637: response to blue light | 1.11E-02 |
| 81 | GO:0034599: cellular response to oxidative stress | 1.14E-02 |
| 82 | GO:0006099: tricarboxylic acid cycle | 1.14E-02 |
| 83 | GO:0009409: response to cold | 1.15E-02 |
| 84 | GO:0010114: response to red light | 1.32E-02 |
| 85 | GO:0051707: response to other organism | 1.32E-02 |
| 86 | GO:0005975: carbohydrate metabolic process | 1.33E-02 |
| 87 | GO:0009644: response to high light intensity | 1.40E-02 |
| 88 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.67E-02 |
| 89 | GO:0009416: response to light stimulus | 1.85E-02 |
| 90 | GO:0009742: brassinosteroid mediated signaling pathway | 2.19E-02 |
| 91 | GO:0009845: seed germination | 2.60E-02 |
| 92 | GO:0006414: translational elongation | 2.75E-02 |
| 93 | GO:0045490: pectin catabolic process | 3.09E-02 |
| 94 | GO:0071555: cell wall organization | 3.73E-02 |
| 95 | GO:0009723: response to ethylene | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0001053: plastid sigma factor activity | 3.53E-06 |
| 4 | GO:0016987: sigma factor activity | 3.53E-06 |
| 5 | GO:0051777: ent-kaurenoate oxidase activity | 5.79E-05 |
| 6 | GO:0008746: NAD(P)+ transhydrogenase activity | 5.79E-05 |
| 7 | GO:0004328: formamidase activity | 5.79E-05 |
| 8 | GO:0019156: isoamylase activity | 1.41E-04 |
| 9 | GO:0004802: transketolase activity | 1.41E-04 |
| 10 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 1.41E-04 |
| 11 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 1.41E-04 |
| 12 | GO:0070402: NADPH binding | 2.40E-04 |
| 13 | GO:0003883: CTP synthase activity | 3.49E-04 |
| 14 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 3.49E-04 |
| 15 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 3.49E-04 |
| 16 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 3.49E-04 |
| 17 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 3.49E-04 |
| 18 | GO:0016851: magnesium chelatase activity | 3.49E-04 |
| 19 | GO:0008891: glycolate oxidase activity | 4.66E-04 |
| 20 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 4.66E-04 |
| 21 | GO:0004045: aminoacyl-tRNA hydrolase activity | 4.66E-04 |
| 22 | GO:0043495: protein anchor | 4.66E-04 |
| 23 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 5.92E-04 |
| 24 | GO:0004556: alpha-amylase activity | 7.24E-04 |
| 25 | GO:0016615: malate dehydrogenase activity | 7.24E-04 |
| 26 | GO:0016788: hydrolase activity, acting on ester bonds | 7.52E-04 |
| 27 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 8.63E-04 |
| 28 | GO:0030060: L-malate dehydrogenase activity | 8.63E-04 |
| 29 | GO:0003746: translation elongation factor activity | 8.97E-04 |
| 30 | GO:0003993: acid phosphatase activity | 9.36E-04 |
| 31 | GO:0019899: enzyme binding | 1.01E-03 |
| 32 | GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity | 1.01E-03 |
| 33 | GO:0005525: GTP binding | 1.12E-03 |
| 34 | GO:0004033: aldo-keto reductase (NADP) activity | 1.16E-03 |
| 35 | GO:0008135: translation factor activity, RNA binding | 1.32E-03 |
| 36 | GO:0008417: fucosyltransferase activity | 1.48E-03 |
| 37 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.52E-03 |
| 38 | GO:0003924: GTPase activity | 1.55E-03 |
| 39 | GO:0030955: potassium ion binding | 1.65E-03 |
| 40 | GO:0004743: pyruvate kinase activity | 1.65E-03 |
| 41 | GO:0008047: enzyme activator activity | 1.83E-03 |
| 42 | GO:0008378: galactosyltransferase activity | 2.21E-03 |
| 43 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 2.62E-03 |
| 44 | GO:0019843: rRNA binding | 2.67E-03 |
| 45 | GO:0004857: enzyme inhibitor activity | 3.26E-03 |
| 46 | GO:0030570: pectate lyase activity | 4.20E-03 |
| 47 | GO:0022891: substrate-specific transmembrane transporter activity | 4.20E-03 |
| 48 | GO:0003727: single-stranded RNA binding | 4.44E-03 |
| 49 | GO:0042802: identical protein binding | 4.66E-03 |
| 50 | GO:0047134: protein-disulfide reductase activity | 4.69E-03 |
| 51 | GO:0004791: thioredoxin-disulfide reductase activity | 5.48E-03 |
| 52 | GO:0010181: FMN binding | 5.48E-03 |
| 53 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 6.59E-03 |
| 54 | GO:0005200: structural constituent of cytoskeleton | 7.18E-03 |
| 55 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 7.18E-03 |
| 56 | GO:0052689: carboxylic ester hydrolase activity | 7.75E-03 |
| 57 | GO:0016168: chlorophyll binding | 8.08E-03 |
| 58 | GO:0004222: metalloendopeptidase activity | 1.00E-02 |
| 59 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.04E-02 |
| 60 | GO:0003723: RNA binding | 1.06E-02 |
| 61 | GO:0016491: oxidoreductase activity | 1.11E-02 |
| 62 | GO:0004185: serine-type carboxypeptidase activity | 1.32E-02 |
| 63 | GO:0003690: double-stranded DNA binding | 1.67E-02 |
| 64 | GO:0015171: amino acid transmembrane transporter activity | 1.75E-02 |
| 65 | GO:0030599: pectinesterase activity | 2.01E-02 |
| 66 | GO:0015035: protein disulfide oxidoreductase activity | 2.14E-02 |
| 67 | GO:0008026: ATP-dependent helicase activity | 2.19E-02 |
| 68 | GO:0016758: transferase activity, transferring hexosyl groups | 2.41E-02 |
| 69 | GO:0016829: lyase activity | 2.60E-02 |
| 70 | GO:0046910: pectinesterase inhibitor activity | 2.94E-02 |
| 71 | GO:0000287: magnesium ion binding | 4.17E-02 |
| 72 | GO:0050660: flavin adenine dinucleotide binding | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.93E-12 |
| 3 | GO:0009570: chloroplast stroma | 3.88E-08 |
| 4 | GO:0048046: apoplast | 2.39E-05 |
| 5 | GO:0009344: nitrite reductase complex [NAD(P)H] | 5.79E-05 |
| 6 | GO:0080085: signal recognition particle, chloroplast targeting | 1.41E-04 |
| 7 | GO:0042651: thylakoid membrane | 1.69E-04 |
| 8 | GO:0010007: magnesium chelatase complex | 2.40E-04 |
| 9 | GO:0009535: chloroplast thylakoid membrane | 2.57E-04 |
| 10 | GO:0009941: chloroplast envelope | 2.85E-04 |
| 11 | GO:0015630: microtubule cytoskeleton | 3.49E-04 |
| 12 | GO:0042646: plastid nucleoid | 3.49E-04 |
| 13 | GO:0010319: stromule | 4.95E-04 |
| 14 | GO:0009295: nucleoid | 4.95E-04 |
| 15 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 1.32E-03 |
| 16 | GO:0042644: chloroplast nucleoid | 1.48E-03 |
| 17 | GO:0009508: plastid chromosome | 2.41E-03 |
| 18 | GO:0030095: chloroplast photosystem II | 2.62E-03 |
| 19 | GO:0005618: cell wall | 3.26E-03 |
| 20 | GO:0009654: photosystem II oxygen evolving complex | 3.49E-03 |
| 21 | GO:0009579: thylakoid | 4.00E-03 |
| 22 | GO:0046658: anchored component of plasma membrane | 4.85E-03 |
| 23 | GO:0009523: photosystem II | 5.75E-03 |
| 24 | GO:0019898: extrinsic component of membrane | 5.75E-03 |
| 25 | GO:0032580: Golgi cisterna membrane | 6.88E-03 |
| 26 | GO:0030529: intracellular ribonucleoprotein complex | 7.78E-03 |
| 27 | GO:0009505: plant-type cell wall | 1.04E-02 |
| 28 | GO:0009534: chloroplast thylakoid | 2.23E-02 |
| 29 | GO:0009543: chloroplast thylakoid lumen | 2.46E-02 |
| 30 | GO:0005623: cell | 2.51E-02 |
| 31 | GO:0031225: anchored component of membrane | 2.88E-02 |
| 32 | GO:0005622: intracellular | 3.28E-02 |
| 33 | GO:0005874: microtubule | 4.80E-02 |
| 34 | GO:0031969: chloroplast membrane | 4.92E-02 |