co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G45960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0031222: arabinan catabolic process	0.00E+00
4	GO:0061157: mRNA destabilization	0.00E+00
5	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
6	GO:0001778: plasma membrane repair	0.00E+00
7	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
8	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
9	GO:0046620: regulation of organ growth	2.54E-05
10	GO:0009733: response to auxin	1.24E-04
11	GO:0006285: base-excision repair, AP site formation	4.81E-04
12	GO:0010480: microsporocyte differentiation	4.81E-04
13	GO:0015904: tetracycline transport	4.81E-04
14	GO:0046520: sphingoid biosynthetic process	4.81E-04
15	GO:0040008: regulation of growth	8.91E-04
16	GO:0009734: auxin-activated signaling pathway	9.77E-04
17	GO:0006741: NADP biosynthetic process	1.04E-03
18	GO:0009786: regulation of asymmetric cell division	1.04E-03
19	GO:0046740: transport of virus in host, cell to cell	1.04E-03
20	GO:0031648: protein destabilization	1.04E-03
21	GO:2000123: positive regulation of stomatal complex development	1.04E-03
22	GO:0016255: attachment of GPI anchor to protein	1.69E-03
23	GO:0071398: cellular response to fatty acid	1.69E-03
24	GO:0048575: short-day photoperiodism, flowering	1.69E-03
25	GO:0019674: NAD metabolic process	1.69E-03
26	GO:0045910: negative regulation of DNA recombination	1.69E-03
27	GO:0090506: axillary shoot meristem initiation	1.69E-03
28	GO:0033591: response to L-ascorbic acid	1.69E-03
29	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	1.69E-03
30	GO:0006612: protein targeting to membrane	2.45E-03
31	GO:0010321: regulation of vegetative phase change	2.45E-03
32	GO:0019363: pyridine nucleotide biosynthetic process	2.45E-03
33	GO:0010371: regulation of gibberellin biosynthetic process	2.45E-03
34	GO:0032456: endocytic recycling	2.45E-03
35	GO:1990019: protein storage vacuole organization	2.45E-03
36	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.23E-03
37	GO:2000038: regulation of stomatal complex development	3.30E-03
38	GO:0009755: hormone-mediated signaling pathway	3.30E-03
39	GO:0009926: auxin polar transport	3.95E-03
40	GO:0009686: gibberellin biosynthetic process	4.14E-03
41	GO:0016131: brassinosteroid metabolic process	4.23E-03
42	GO:0048497: maintenance of floral organ identity	4.23E-03
43	GO:0010438: cellular response to sulfur starvation	4.23E-03
44	GO:0010375: stomatal complex patterning	4.23E-03
45	GO:0045487: gibberellin catabolic process	4.23E-03
46	GO:0009913: epidermal cell differentiation	5.24E-03
47	GO:1902456: regulation of stomatal opening	5.24E-03
48	GO:0003006: developmental process involved in reproduction	5.24E-03
49	GO:0010405: arabinogalactan protein metabolic process	5.24E-03
50	GO:0010358: leaf shaping	5.24E-03
51	GO:0016554: cytidine to uridine editing	5.24E-03
52	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.24E-03
53	GO:0009612: response to mechanical stimulus	6.32E-03
54	GO:0030488: tRNA methylation	6.32E-03
55	GO:0031930: mitochondria-nucleus signaling pathway	6.32E-03
56	GO:0016132: brassinosteroid biosynthetic process	7.03E-03
57	GO:0071554: cell wall organization or biogenesis	7.03E-03
58	GO:0048437: floral organ development	7.48E-03
59	GO:0010583: response to cyclopentenone	7.52E-03
60	GO:0032502: developmental process	7.52E-03
61	GO:0006402: mRNA catabolic process	8.71E-03
62	GO:0010439: regulation of glucosinolate biosynthetic process	8.71E-03
63	GO:0009690: cytokinin metabolic process	8.71E-03
64	GO:0009704: de-etiolation	8.71E-03
65	GO:2000070: regulation of response to water deprivation	8.71E-03
66	GO:0009819: drought recovery	8.71E-03
67	GO:0010497: plasmodesmata-mediated intercellular transport	1.00E-02
68	GO:0051865: protein autoubiquitination	1.14E-02
69	GO:0000373: Group II intron splicing	1.14E-02
70	GO:0009056: catabolic process	1.14E-02
71	GO:0000902: cell morphogenesis	1.14E-02
72	GO:0048507: meristem development	1.14E-02
73	GO:0048573: photoperiodism, flowering	1.20E-02
74	GO:0006351: transcription, DNA-templated	1.25E-02
75	GO:0009638: phototropism	1.28E-02
76	GO:1900865: chloroplast RNA modification	1.28E-02
77	GO:0031425: chloroplast RNA processing	1.28E-02
78	GO:0009299: mRNA transcription	1.43E-02
79	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.43E-02
80	GO:0048829: root cap development	1.43E-02
81	GO:0009641: shade avoidance	1.43E-02
82	GO:0006298: mismatch repair	1.43E-02
83	GO:0016441: posttranscriptional gene silencing	1.43E-02
84	GO:0007165: signal transduction	1.48E-02
85	GO:0048229: gametophyte development	1.58E-02
86	GO:0009682: induced systemic resistance	1.58E-02
87	GO:0009416: response to light stimulus	1.64E-02
88	GO:0009867: jasmonic acid mediated signaling pathway	1.70E-02
89	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.74E-02
90	GO:0012501: programmed cell death	1.74E-02
91	GO:0010582: floral meristem determinacy	1.74E-02
92	GO:0010628: positive regulation of gene expression	1.91E-02
93	GO:2000028: regulation of photoperiodism, flowering	1.91E-02
94	GO:0010075: regulation of meristem growth	1.91E-02
95	GO:0009725: response to hormone	1.91E-02
96	GO:0009767: photosynthetic electron transport chain	1.91E-02
97	GO:0010588: cotyledon vascular tissue pattern formation	1.91E-02
98	GO:0010102: lateral root morphogenesis	1.91E-02
99	GO:0009785: blue light signaling pathway	1.91E-02
100	GO:0006631: fatty acid metabolic process	2.02E-02
101	GO:0010207: photosystem II assembly	2.08E-02
102	GO:0010223: secondary shoot formation	2.08E-02
103	GO:0009934: regulation of meristem structural organization	2.08E-02
104	GO:0006302: double-strand break repair	2.08E-02
105	GO:0048467: gynoecium development	2.08E-02
106	GO:0009739: response to gibberellin	2.11E-02
107	GO:0090351: seedling development	2.26E-02
108	GO:0042546: cell wall biogenesis	2.28E-02
109	GO:0005992: trehalose biosynthetic process	2.62E-02
110	GO:0051321: meiotic cell cycle	3.01E-02
111	GO:0016114: terpenoid biosynthetic process	3.01E-02
112	GO:0010431: seed maturation	3.01E-02
113	GO:0048278: vesicle docking	3.01E-02
114	GO:0009826: unidimensional cell growth	3.02E-02
115	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.21E-02
116	GO:0010082: regulation of root meristem growth	3.42E-02
117	GO:0009294: DNA mediated transformation	3.42E-02
118	GO:0001944: vasculature development	3.42E-02
119	GO:0009625: response to insect	3.42E-02
120	GO:0009693: ethylene biosynthetic process	3.42E-02
121	GO:0071215: cellular response to abscisic acid stimulus	3.42E-02
122	GO:0016567: protein ubiquitination	3.44E-02
123	GO:0006284: base-excision repair	3.63E-02
124	GO:0006468: protein phosphorylation	3.70E-02
125	GO:0009740: gibberellic acid mediated signaling pathway	3.96E-02
126	GO:0080022: primary root development	4.06E-02
127	GO:0010501: RNA secondary structure unwinding	4.06E-02
128	GO:0010087: phloem or xylem histogenesis	4.06E-02
129	GO:0010118: stomatal movement	4.06E-02
130	GO:0048653: anther development	4.06E-02
131	GO:0009908: flower development	4.15E-02
132	GO:0009958: positive gravitropism	4.28E-02
133	GO:0010182: sugar mediated signaling pathway	4.28E-02
134	GO:0009741: response to brassinosteroid	4.28E-02
135	GO:0010268: brassinosteroid homeostasis	4.28E-02
136	GO:0009960: endosperm development	4.28E-02
137	GO:0010305: leaf vascular tissue pattern formation	4.28E-02
138	GO:0009742: brassinosteroid mediated signaling pathway	4.45E-02
139	GO:0007018: microtubule-based movement	4.51E-02
140	GO:0061025: membrane fusion	4.51E-02
141	GO:0009646: response to absence of light	4.51E-02
142	GO:0048825: cotyledon development	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
3	GO:0047661: amino-acid racemase activity	0.00E+00
4	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
5	GO:0015267: channel activity	0.00E+00
6	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	4.81E-04
7	GO:0042736: NADH kinase activity	4.81E-04
8	GO:0010012: steroid 22-alpha hydroxylase activity	4.81E-04
9	GO:0000170: sphingosine hydroxylase activity	4.81E-04
10	GO:0050139: nicotinate-N-glucosyltransferase activity	4.81E-04
11	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	4.81E-04
12	GO:0005227: calcium activated cation channel activity	4.81E-04
13	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.04E-03
14	GO:0043425: bHLH transcription factor binding	1.04E-03
15	GO:0010296: prenylcysteine methylesterase activity	1.04E-03
16	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.04E-03
17	GO:0042284: sphingolipid delta-4 desaturase activity	1.04E-03
18	GO:0008493: tetracycline transporter activity	1.04E-03
19	GO:1901981: phosphatidylinositol phosphate binding	1.04E-03
20	GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity	1.69E-03
21	GO:0045544: gibberellin 20-oxidase activity	2.45E-03
22	GO:0001872: (1->3)-beta-D-glucan binding	2.45E-03
23	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.45E-03
24	GO:0046556: alpha-L-arabinofuranosidase activity	3.30E-03
25	GO:0019104: DNA N-glycosylase activity	3.30E-03
26	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.30E-03
27	GO:0019199: transmembrane receptor protein kinase activity	3.30E-03
28	GO:0033612: receptor serine/threonine kinase binding	3.46E-03
29	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.23E-03
30	GO:0004871: signal transducer activity	4.54E-03
31	GO:0030983: mismatched DNA binding	5.24E-03
32	GO:0080030: methyl indole-3-acetate esterase activity	5.24E-03
33	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.24E-03
34	GO:0004709: MAP kinase kinase kinase activity	5.24E-03
35	GO:0051753: mannan synthase activity	6.32E-03
36	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	6.32E-03
37	GO:0016832: aldehyde-lyase activity	6.32E-03
38	GO:0004519: endonuclease activity	7.00E-03
39	GO:0016413: O-acetyltransferase activity	9.64E-03
40	GO:0003951: NAD+ kinase activity	1.00E-02
41	GO:0003724: RNA helicase activity	1.00E-02
42	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.14E-02
43	GO:0004805: trehalose-phosphatase activity	1.43E-02
44	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.55E-02
45	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.70E-02
46	GO:0004722: protein serine/threonine phosphatase activity	1.74E-02
47	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.83E-02
48	GO:0003677: DNA binding	2.21E-02
49	GO:0003712: transcription cofactor activity	2.26E-02
50	GO:0004190: aspartic-type endopeptidase activity	2.26E-02
51	GO:0008146: sulfotransferase activity	2.26E-02
52	GO:0009055: electron carrier activity	2.31E-02
53	GO:0004674: protein serine/threonine kinase activity	2.34E-02
54	GO:0043621: protein self-association	2.37E-02
55	GO:0051536: iron-sulfur cluster binding	2.62E-02
56	GO:0031418: L-ascorbic acid binding	2.62E-02
57	GO:0003964: RNA-directed DNA polymerase activity	3.01E-02
58	GO:0008408: 3'-5' exonuclease activity	3.01E-02
59	GO:0010333: terpene synthase activity	3.01E-02
60	GO:0003777: microtubule motor activity	3.28E-02
61	GO:0003727: single-stranded RNA binding	3.63E-02
62	GO:0016874: ligase activity	3.96E-02
63	GO:0004672: protein kinase activity	4.19E-02
64	GO:0005199: structural constituent of cell wall	4.28E-02
65	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.28E-02
66	GO:0015035: protein disulfide oxidoreductase activity	4.33E-02
67	GO:0050662: coenzyme binding	4.51E-02
68	GO:0016853: isomerase activity	4.51E-02
69	GO:0019901: protein kinase binding	4.74E-02
70	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0032541: cortical endoplasmic reticulum	4.81E-04
3	GO:0000791: euchromatin	4.81E-04
4	GO:0030870: Mre11 complex	1.04E-03
5	GO:0042765: GPI-anchor transamidase complex	1.69E-03
6	GO:0030139: endocytic vesicle	1.69E-03
7	GO:0032585: multivesicular body membrane	2.45E-03
8	GO:0009654: photosystem II oxygen evolving complex	3.15E-03
9	GO:0009544: chloroplast ATP synthase complex	3.30E-03
10	GO:0009898: cytoplasmic side of plasma membrane	3.30E-03
11	GO:0000795: synaptonemal complex	4.23E-03
12	GO:0019898: extrinsic component of membrane	6.57E-03
13	GO:0009986: cell surface	7.48E-03
14	GO:0010494: cytoplasmic stress granule	1.14E-02
15	GO:0042644: chloroplast nucleoid	1.14E-02
16	GO:0005578: proteinaceous extracellular matrix	1.91E-02
17	GO:0030095: chloroplast photosystem II	2.08E-02
18	GO:0005886: plasma membrane	2.43E-02
19	GO:0005875: microtubule associated complex	2.44E-02
20	GO:0009532: plastid stroma	3.01E-02
21	GO:0015629: actin cytoskeleton	3.42E-02
22	GO:0010008: endosome membrane	3.61E-02
23	GO:0005871: kinesin complex	3.84E-02
24	GO:0012505: endomembrane system	4.08E-02
25	GO:0009504: cell plate	4.74E-02