Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G45930

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006849: plasma membrane pyruvate transport0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0000476: maturation of 4.5S rRNA0.00E+00
4GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
5GO:0000967: rRNA 5'-end processing0.00E+00
6GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
9GO:0005996: monosaccharide metabolic process0.00E+00
10GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
11GO:0015717: triose phosphate transport0.00E+00
12GO:0046471: phosphatidylglycerol metabolic process0.00E+00
13GO:1905157: positive regulation of photosynthesis0.00E+00
14GO:0009773: photosynthetic electron transport in photosystem I5.76E-10
15GO:0015979: photosynthesis3.69E-08
16GO:0015995: chlorophyll biosynthetic process3.87E-08
17GO:0034470: ncRNA processing8.79E-06
18GO:0032544: plastid translation2.99E-05
19GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly6.54E-05
20GO:0015994: chlorophyll metabolic process1.14E-04
21GO:0010207: photosystem II assembly1.57E-04
22GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.51E-04
23GO:0009643: photosynthetic acclimation2.51E-04
24GO:0009768: photosynthesis, light harvesting in photosystem I2.87E-04
25GO:1901259: chloroplast rRNA processing3.37E-04
26GO:0055114: oxidation-reduction process3.66E-04
27GO:0042254: ribosome biogenesis4.12E-04
28GO:0009772: photosynthetic electron transport in photosystem II4.34E-04
29GO:0009090: homoserine biosynthetic process4.45E-04
30GO:0005980: glycogen catabolic process4.45E-04
31GO:0043686: co-translational protein modification4.45E-04
32GO:0043007: maintenance of rDNA4.45E-04
33GO:0010028: xanthophyll cycle4.45E-04
34GO:0034337: RNA folding4.45E-04
35GO:0009642: response to light intensity5.41E-04
36GO:0010114: response to red light5.76E-04
37GO:0009657: plastid organization6.60E-04
38GO:0006898: receptor-mediated endocytosis9.61E-04
39GO:0010353: response to trehalose9.61E-04
40GO:0016122: xanthophyll metabolic process9.61E-04
41GO:0006729: tetrahydrobiopterin biosynthetic process9.61E-04
42GO:0030388: fructose 1,6-bisphosphate metabolic process9.61E-04
43GO:0010270: photosystem II oxygen evolving complex assembly9.61E-04
44GO:0006782: protoporphyrinogen IX biosynthetic process1.08E-03
45GO:0032259: methylation1.22E-03
46GO:0043085: positive regulation of catalytic activity1.25E-03
47GO:0005983: starch catabolic process1.43E-03
48GO:0006000: fructose metabolic process1.57E-03
49GO:0090391: granum assembly1.57E-03
50GO:0006518: peptide metabolic process1.57E-03
51GO:0009405: pathogenesis1.57E-03
52GO:0035436: triose phosphate transmembrane transport1.57E-03
53GO:0006696: ergosterol biosynthetic process1.57E-03
54GO:0006094: gluconeogenesis1.62E-03
55GO:0006412: translation1.79E-03
56GO:0051085: chaperone mediated protein folding requiring cofactor2.27E-03
57GO:0009152: purine ribonucleotide biosynthetic process2.27E-03
58GO:0010601: positive regulation of auxin biosynthetic process2.27E-03
59GO:0046653: tetrahydrofolate metabolic process2.27E-03
60GO:0009052: pentose-phosphate shunt, non-oxidative branch2.27E-03
61GO:0010731: protein glutathionylation2.27E-03
62GO:0009067: aspartate family amino acid biosynthetic process2.27E-03
63GO:1902358: sulfate transmembrane transport2.27E-03
64GO:0045338: farnesyl diphosphate metabolic process2.27E-03
65GO:0006020: inositol metabolic process2.27E-03
66GO:0071484: cellular response to light intensity2.27E-03
67GO:0006636: unsaturated fatty acid biosynthetic process2.29E-03
68GO:0006418: tRNA aminoacylation for protein translation2.80E-03
69GO:0009765: photosynthesis, light harvesting3.05E-03
70GO:0006109: regulation of carbohydrate metabolic process3.05E-03
71GO:0045727: positive regulation of translation3.05E-03
72GO:0006021: inositol biosynthetic process3.05E-03
73GO:0071483: cellular response to blue light3.05E-03
74GO:0015713: phosphoglycerate transport3.05E-03
75GO:0061077: chaperone-mediated protein folding3.08E-03
76GO:0009735: response to cytokinin3.49E-03
77GO:0006564: L-serine biosynthetic process3.90E-03
78GO:0009904: chloroplast accumulation movement3.90E-03
79GO:0006656: phosphatidylcholine biosynthetic process3.90E-03
80GO:0031365: N-terminal protein amino acid modification3.90E-03
81GO:1902456: regulation of stomatal opening4.83E-03
82GO:0010190: cytochrome b6f complex assembly4.83E-03
83GO:0006828: manganese ion transport4.83E-03
84GO:0046855: inositol phosphate dephosphorylation4.83E-03
85GO:0010304: PSII associated light-harvesting complex II catabolic process4.83E-03
86GO:0006364: rRNA processing4.99E-03
87GO:0006662: glycerol ether metabolic process5.06E-03
88GO:0015986: ATP synthesis coupled proton transport5.44E-03
89GO:0009955: adaxial/abaxial pattern specification5.83E-03
90GO:0042026: protein refolding5.83E-03
91GO:0009903: chloroplast avoidance movement5.83E-03
92GO:0009854: oxidative photosynthetic carbon pathway5.83E-03
93GO:0009088: threonine biosynthetic process5.83E-03
94GO:0019252: starch biosynthetic process5.84E-03
95GO:0048437: floral organ development6.89E-03
96GO:0010196: nonphotochemical quenching6.89E-03
97GO:0009645: response to low light intensity stimulus6.89E-03
98GO:0008272: sulfate transport6.89E-03
99GO:0009769: photosynthesis, light harvesting in photosystem II6.89E-03
100GO:0009610: response to symbiotic fungus6.89E-03
101GO:1901657: glycosyl compound metabolic process7.13E-03
102GO:0030091: protein repair8.02E-03
103GO:0010078: maintenance of root meristem identity8.02E-03
104GO:0006353: DNA-templated transcription, termination8.02E-03
105GO:0006002: fructose 6-phosphate metabolic process9.21E-03
106GO:0015996: chlorophyll catabolic process9.21E-03
107GO:0043562: cellular response to nitrogen levels9.21E-03
108GO:0009821: alkaloid biosynthetic process1.05E-02
109GO:0006098: pentose-phosphate shunt1.05E-02
110GO:0010206: photosystem II repair1.05E-02
111GO:0006783: heme biosynthetic process1.05E-02
112GO:0006754: ATP biosynthetic process1.05E-02
113GO:0009409: response to cold1.12E-02
114GO:0006779: porphyrin-containing compound biosynthetic process1.18E-02
115GO:0009086: methionine biosynthetic process1.18E-02
116GO:0005982: starch metabolic process1.18E-02
117GO:0018298: protein-chromophore linkage1.19E-02
118GO:0009813: flavonoid biosynthetic process1.25E-02
119GO:0010218: response to far red light1.31E-02
120GO:0045036: protein targeting to chloroplast1.31E-02
121GO:0009641: shade avoidance1.31E-02
122GO:0006810: transport1.33E-02
123GO:0006633: fatty acid biosynthetic process1.40E-02
124GO:0005975: carbohydrate metabolic process1.43E-02
125GO:0006816: calcium ion transport1.46E-02
126GO:0009089: lysine biosynthetic process via diaminopimelate1.46E-02
127GO:0000272: polysaccharide catabolic process1.46E-02
128GO:0006415: translational termination1.46E-02
129GO:0018119: peptidyl-cysteine S-nitrosylation1.46E-02
130GO:0009684: indoleacetic acid biosynthetic process1.46E-02
131GO:0009853: photorespiration1.51E-02
132GO:0009637: response to blue light1.51E-02
133GO:0034599: cellular response to oxidative stress1.58E-02
134GO:0006790: sulfur compound metabolic process1.60E-02
135GO:0016024: CDP-diacylglycerol biosynthetic process1.60E-02
136GO:0005986: sucrose biosynthetic process1.75E-02
137GO:0030048: actin filament-based movement1.75E-02
138GO:0010588: cotyledon vascular tissue pattern formation1.75E-02
139GO:0018107: peptidyl-threonine phosphorylation1.75E-02
140GO:0048467: gynoecium development1.91E-02
141GO:0010143: cutin biosynthetic process1.91E-02
142GO:0007015: actin filament organization1.91E-02
143GO:0019253: reductive pentose-phosphate cycle1.91E-02
144GO:0010223: secondary shoot formation1.91E-02
145GO:0009266: response to temperature stimulus1.91E-02
146GO:0005985: sucrose metabolic process2.07E-02
147GO:0046854: phosphatidylinositol phosphorylation2.07E-02
148GO:0051017: actin filament bundle assembly2.41E-02
149GO:0009658: chloroplast organization2.73E-02
150GO:0019915: lipid storage2.77E-02
151GO:0009269: response to desiccation2.77E-02
152GO:0016114: terpenoid biosynthetic process2.77E-02
153GO:0016226: iron-sulfur cluster assembly2.95E-02
154GO:0030433: ubiquitin-dependent ERAD pathway2.95E-02
155GO:0007005: mitochondrion organization2.95E-02
156GO:0048367: shoot system development3.21E-02
157GO:0009306: protein secretion3.33E-02
158GO:0016117: carotenoid biosynthetic process3.53E-02
159GO:0080167: response to karrikin3.57E-02
160GO:0042631: cellular response to water deprivation3.73E-02
161GO:0080022: primary root development3.73E-02
162GO:0010087: phloem or xylem histogenesis3.73E-02
163GO:0006396: RNA processing3.85E-02
164GO:0009958: positive gravitropism3.94E-02
165GO:0009741: response to brassinosteroid3.94E-02
166GO:0006814: sodium ion transport4.14E-02
167GO:0048825: cotyledon development4.36E-02
168GO:0009556: microsporogenesis4.36E-02
169GO:0009851: auxin biosynthetic process4.36E-02
170GO:0045454: cell redox homeostasis4.45E-02
171GO:0032502: developmental process4.79E-02
172GO:0009630: gravitropism4.79E-02
173GO:0009058: biosynthetic process4.92E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
3GO:0090711: FMN hydrolase activity0.00E+00
4GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
5GO:0010303: limit dextrinase activity0.00E+00
6GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
7GO:0046422: violaxanthin de-epoxidase activity0.00E+00
8GO:0008887: glycerate kinase activity0.00E+00
9GO:0080082: esculin beta-glucosidase activity0.00E+00
10GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
11GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
12GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
13GO:0004567: beta-mannosidase activity0.00E+00
14GO:0051060: pullulanase activity0.00E+00
15GO:0004822: isoleucine-tRNA ligase activity0.00E+00
16GO:0046408: chlorophyll synthetase activity0.00E+00
17GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
18GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
19GO:0047668: amygdalin beta-glucosidase activity0.00E+00
20GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
21GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
22GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
23GO:0019843: rRNA binding1.94E-09
24GO:0005528: FK506 binding3.95E-07
25GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.70E-06
26GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.14E-04
27GO:0003735: structural constituent of ribosome1.87E-04
28GO:0031409: pigment binding2.17E-04
29GO:0080079: cellobiose glucosidase activity4.45E-04
30GO:0050521: alpha-glucan, water dikinase activity4.45E-04
31GO:0008184: glycogen phosphorylase activity4.45E-04
32GO:0004856: xylulokinase activity4.45E-04
33GO:0004645: phosphorylase activity4.45E-04
34GO:0034256: chlorophyll(ide) b reductase activity4.45E-04
35GO:0004853: uroporphyrinogen decarboxylase activity4.45E-04
36GO:0042586: peptide deformylase activity4.45E-04
37GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.45E-04
38GO:0045486: naringenin 3-dioxygenase activity4.45E-04
39GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity4.45E-04
40GO:0052832: inositol monophosphate 3-phosphatase activity9.61E-04
41GO:0033201: alpha-1,4-glucan synthase activity9.61E-04
42GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.61E-04
43GO:0018708: thiol S-methyltransferase activity9.61E-04
44GO:0080097: L-tryptophan:pyruvate aminotransferase activity9.61E-04
45GO:0016630: protochlorophyllide reductase activity9.61E-04
46GO:0008934: inositol monophosphate 1-phosphatase activity9.61E-04
47GO:0052833: inositol monophosphate 4-phosphatase activity9.61E-04
48GO:0004412: homoserine dehydrogenase activity9.61E-04
49GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.61E-04
50GO:0000234: phosphoethanolamine N-methyltransferase activity9.61E-04
51GO:0008967: phosphoglycolate phosphatase activity9.61E-04
52GO:0047746: chlorophyllase activity9.61E-04
53GO:0042389: omega-3 fatty acid desaturase activity9.61E-04
54GO:0010297: heteropolysaccharide binding9.61E-04
55GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity9.61E-04
56GO:0004617: phosphoglycerate dehydrogenase activity9.61E-04
57GO:0008047: enzyme activator activity1.08E-03
58GO:0047372: acylglycerol lipase activity1.25E-03
59GO:0016491: oxidoreductase activity1.37E-03
60GO:0016168: chlorophyll binding1.39E-03
61GO:0010277: chlorophyllide a oxygenase [overall] activity1.57E-03
62GO:0004373: glycogen (starch) synthase activity1.57E-03
63GO:0090729: toxin activity1.57E-03
64GO:0002161: aminoacyl-tRNA editing activity1.57E-03
65GO:0004751: ribose-5-phosphate isomerase activity1.57E-03
66GO:0045174: glutathione dehydrogenase (ascorbate) activity1.57E-03
67GO:0050833: pyruvate transmembrane transporter activity1.57E-03
68GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.57E-03
69GO:0071917: triose-phosphate transmembrane transporter activity1.57E-03
70GO:0008864: formyltetrahydrofolate deformylase activity1.57E-03
71GO:0008168: methyltransferase activity1.58E-03
72GO:0004072: aspartate kinase activity2.27E-03
73GO:0019201: nucleotide kinase activity2.27E-03
74GO:0016149: translation release factor activity, codon specific2.27E-03
75GO:0022890: inorganic cation transmembrane transporter activity2.27E-03
76GO:0008508: bile acid:sodium symporter activity2.27E-03
77GO:0045430: chalcone isomerase activity3.05E-03
78GO:0009011: starch synthase activity3.05E-03
79GO:0015120: phosphoglycerate transmembrane transporter activity3.05E-03
80GO:0003959: NADPH dehydrogenase activity3.90E-03
81GO:0016846: carbon-sulfur lyase activity3.90E-03
82GO:0016773: phosphotransferase activity, alcohol group as acceptor3.90E-03
83GO:0047134: protein-disulfide reductase activity4.34E-03
84GO:0004812: aminoacyl-tRNA ligase activity4.34E-03
85GO:0004332: fructose-bisphosphate aldolase activity4.83E-03
86GO:0004629: phospholipase C activity4.83E-03
87GO:0004556: alpha-amylase activity4.83E-03
88GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.83E-03
89GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.83E-03
90GO:0008200: ion channel inhibitor activity4.83E-03
91GO:0046933: proton-transporting ATP synthase activity, rotational mechanism5.06E-03
92GO:0004791: thioredoxin-disulfide reductase activity5.44E-03
93GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.83E-03
94GO:0004017: adenylate kinase activity5.83E-03
95GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.83E-03
96GO:0004435: phosphatidylinositol phospholipase C activity5.83E-03
97GO:0048038: quinone binding6.25E-03
98GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor7.13E-03
99GO:0004525: ribonuclease III activity8.02E-03
100GO:0004033: aldo-keto reductase (NADP) activity8.02E-03
101GO:0016597: amino acid binding8.56E-03
102GO:0008271: secondary active sulfate transmembrane transporter activity9.21E-03
103GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.21E-03
104GO:0071949: FAD binding1.05E-02
105GO:0003747: translation release factor activity1.05E-02
106GO:0102483: scopolin beta-glucosidase activity1.07E-02
107GO:0005384: manganese ion transmembrane transporter activity1.18E-02
108GO:0016844: strictosidine synthase activity1.18E-02
109GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.18E-02
110GO:0004222: metalloendopeptidase activity1.31E-02
111GO:0030234: enzyme regulator activity1.31E-02
112GO:0015386: potassium:proton antiporter activity1.46E-02
113GO:0008559: xenobiotic-transporting ATPase activity1.46E-02
114GO:0044183: protein binding involved in protein folding1.46E-02
115GO:0015116: sulfate transmembrane transporter activity1.60E-02
116GO:0000049: tRNA binding1.60E-02
117GO:0008422: beta-glucosidase activity1.65E-02
118GO:0003725: double-stranded RNA binding1.75E-02
119GO:0004565: beta-galactosidase activity1.75E-02
120GO:0004022: alcohol dehydrogenase (NAD) activity1.75E-02
121GO:0015095: magnesium ion transmembrane transporter activity1.75E-02
122GO:0031072: heat shock protein binding1.75E-02
123GO:0003774: motor activity1.91E-02
124GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.91E-02
125GO:0008266: poly(U) RNA binding1.91E-02
126GO:0043621: protein self-association2.11E-02
127GO:0051537: 2 iron, 2 sulfur cluster binding2.11E-02
128GO:0004857: enzyme inhibitor activity2.41E-02
129GO:0051536: iron-sulfur cluster binding2.41E-02
130GO:0031418: L-ascorbic acid binding2.41E-02
131GO:0015079: potassium ion transmembrane transporter activity2.59E-02
132GO:0003727: single-stranded RNA binding3.33E-02
133GO:0051082: unfolded protein binding3.74E-02
134GO:0015035: protein disulfide oxidoreductase activity3.85E-02
135GO:0015299: solute:proton antiporter activity4.14E-02
136GO:0050662: coenzyme binding4.14E-02
137GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.79E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0009507: chloroplast1.31E-67
5GO:0009535: chloroplast thylakoid membrane3.96E-37
6GO:0009534: chloroplast thylakoid1.40E-34
7GO:0009941: chloroplast envelope1.80E-30
8GO:0009570: chloroplast stroma1.26E-28
9GO:0009579: thylakoid1.23E-18
10GO:0009543: chloroplast thylakoid lumen6.29E-15
11GO:0031977: thylakoid lumen1.36E-11
12GO:0031969: chloroplast membrane9.29E-11
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.03E-08
14GO:0010287: plastoglobule6.06E-06
15GO:0005840: ribosome1.29E-05
16GO:0010319: stromule1.35E-04
17GO:0030076: light-harvesting complex1.85E-04
18GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.51E-04
19GO:0009654: photosystem II oxygen evolving complex2.87E-04
20GO:0042651: thylakoid membrane2.87E-04
21GO:0009547: plastid ribosome4.45E-04
22GO:0019898: extrinsic component of membrane7.51E-04
23GO:0000427: plastid-encoded plastid RNA polymerase complex9.61E-04
24GO:0033281: TAT protein transport complex1.57E-03
25GO:0030095: chloroplast photosystem II1.83E-03
26GO:0009517: PSII associated light-harvesting complex II3.05E-03
27GO:0009544: chloroplast ATP synthase complex3.05E-03
28GO:0009522: photosystem I5.44E-03
29GO:0009840: chloroplastic endopeptidase Clp complex5.83E-03
30GO:0031982: vesicle8.02E-03
31GO:0009501: amyloplast8.02E-03
32GO:0031901: early endosome membrane1.05E-02
33GO:0005763: mitochondrial small ribosomal subunit1.05E-02
34GO:0005623: cell1.08E-02
35GO:0016459: myosin complex1.31E-02
36GO:0015934: large ribosomal subunit1.38E-02
37GO:0032040: small-subunit processome1.60E-02
38GO:0000311: plastid large ribosomal subunit1.60E-02
39GO:0016020: membrane1.63E-02
40GO:0015935: small ribosomal subunit2.77E-02
41GO:0009532: plastid stroma2.77E-02
42GO:0015629: actin cytoskeleton3.14E-02
43GO:0009706: chloroplast inner membrane3.74E-02
44GO:0022626: cytosolic ribosome3.80E-02
45GO:0009523: photosystem II4.36E-02
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Gene type



Gene DE type