Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G45680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
5GO:0015979: photosynthesis1.45E-09
6GO:0015995: chlorophyll biosynthetic process4.18E-09
7GO:0009773: photosynthetic electron transport in photosystem I8.52E-09
8GO:0032544: plastid translation1.33E-07
9GO:0055114: oxidation-reduction process1.25E-06
10GO:0030388: fructose 1,6-bisphosphate metabolic process3.96E-06
11GO:0010196: nonphotochemical quenching4.97E-06
12GO:0042254: ribosome biogenesis1.23E-05
13GO:0006000: fructose metabolic process1.41E-05
14GO:0090391: granum assembly1.41E-05
15GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.17E-05
16GO:0009735: response to cytokinin4.71E-05
17GO:0015994: chlorophyll metabolic process5.68E-05
18GO:0010207: photosystem II assembly6.35E-05
19GO:1901259: chloroplast rRNA processing1.78E-04
20GO:0006412: translation2.07E-04
21GO:0010028: xanthophyll cycle2.94E-04
22GO:0034337: RNA folding2.94E-04
23GO:0005980: glycogen catabolic process2.94E-04
24GO:0009642: response to light intensity2.94E-04
25GO:0000476: maturation of 4.5S rRNA2.94E-04
26GO:0000967: rRNA 5'-end processing2.94E-04
27GO:0006002: fructose 6-phosphate metabolic process3.62E-04
28GO:0009657: plastid organization3.62E-04
29GO:0010206: photosystem II repair4.36E-04
30GO:0010027: thylakoid membrane organization6.04E-04
31GO:0010353: response to trehalose6.45E-04
32GO:0016122: xanthophyll metabolic process6.45E-04
33GO:0006729: tetrahydrobiopterin biosynthetic process6.45E-04
34GO:0010270: photosystem II oxygen evolving complex assembly6.45E-04
35GO:0034470: ncRNA processing6.45E-04
36GO:0006898: receptor-mediated endocytosis6.45E-04
37GO:0043085: positive regulation of catalytic activity6.94E-04
38GO:0005983: starch catabolic process7.93E-04
39GO:0006094: gluconeogenesis8.98E-04
40GO:0005986: sucrose biosynthetic process8.98E-04
41GO:0006518: peptide metabolic process1.04E-03
42GO:0034599: cellular response to oxidative stress1.20E-03
43GO:0006633: fatty acid biosynthetic process1.21E-03
44GO:0006636: unsaturated fatty acid biosynthetic process1.25E-03
45GO:1902358: sulfate transmembrane transport1.50E-03
46GO:0006020: inositol metabolic process1.50E-03
47GO:0071484: cellular response to light intensity1.50E-03
48GO:0051085: chaperone mediated protein folding requiring cofactor1.50E-03
49GO:0010731: protein glutathionylation1.50E-03
50GO:0009768: photosynthesis, light harvesting in photosystem I1.53E-03
51GO:0019464: glycine decarboxylation via glycine cleavage system2.01E-03
52GO:0006109: regulation of carbohydrate metabolic process2.01E-03
53GO:0045727: positive regulation of translation2.01E-03
54GO:0006021: inositol biosynthetic process2.01E-03
55GO:0071483: cellular response to blue light2.01E-03
56GO:0006364: rRNA processing2.27E-03
57GO:0006461: protein complex assembly2.56E-03
58GO:0006656: phosphatidylcholine biosynthetic process2.56E-03
59GO:0009904: chloroplast accumulation movement2.56E-03
60GO:0009658: chloroplast organization2.71E-03
61GO:0006662: glycerol ether metabolic process2.74E-03
62GO:0010304: PSII associated light-harvesting complex II catabolic process3.16E-03
63GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.16E-03
64GO:0006828: manganese ion transport3.16E-03
65GO:1902456: regulation of stomatal opening3.16E-03
66GO:0046855: inositol phosphate dephosphorylation3.16E-03
67GO:0010190: cytochrome b6f complex assembly3.16E-03
68GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.16E-03
69GO:0006810: transport3.48E-03
70GO:0009854: oxidative photosynthetic carbon pathway3.81E-03
71GO:0009955: adaxial/abaxial pattern specification3.81E-03
72GO:0042026: protein refolding3.81E-03
73GO:0009903: chloroplast avoidance movement3.81E-03
74GO:0009610: response to symbiotic fungus4.49E-03
75GO:0009772: photosynthetic electron transport in photosystem II4.49E-03
76GO:0008272: sulfate transport4.49E-03
77GO:0045454: cell redox homeostasis4.95E-03
78GO:0030091: protein repair5.21E-03
79GO:0006353: DNA-templated transcription, termination5.21E-03
80GO:0015996: chlorophyll catabolic process5.98E-03
81GO:0016311: dephosphorylation6.06E-03
82GO:0032259: methylation6.38E-03
83GO:0006783: heme biosynthetic process6.77E-03
84GO:0006754: ATP biosynthetic process6.77E-03
85GO:0009631: cold acclimation7.37E-03
86GO:0005982: starch metabolic process7.60E-03
87GO:0010205: photoinhibition7.60E-03
88GO:0009853: photorespiration8.08E-03
89GO:0009641: shade avoidance8.48E-03
90GO:0006782: protoporphyrinogen IX biosynthetic process8.48E-03
91GO:0009409: response to cold8.87E-03
92GO:0006816: calcium ion transport9.38E-03
93GO:0009089: lysine biosynthetic process via diaminopimelate9.38E-03
94GO:0006415: translational termination9.38E-03
95GO:0000272: polysaccharide catabolic process9.38E-03
96GO:0009750: response to fructose9.38E-03
97GO:0018119: peptidyl-cysteine S-nitrosylation9.38E-03
98GO:0006790: sulfur compound metabolic process1.03E-02
99GO:0010114: response to red light1.04E-02
100GO:0018107: peptidyl-threonine phosphorylation1.13E-02
101GO:0010223: secondary shoot formation1.23E-02
102GO:0009266: response to temperature stimulus1.23E-02
103GO:0019253: reductive pentose-phosphate cycle1.23E-02
104GO:0007015: actin filament organization1.23E-02
105GO:0046854: phosphatidylinositol phosphorylation1.33E-02
106GO:0005985: sucrose metabolic process1.33E-02
107GO:0071732: cellular response to nitric oxide1.33E-02
108GO:0000027: ribosomal large subunit assembly1.55E-02
109GO:0051017: actin filament bundle assembly1.55E-02
110GO:0006418: tRNA aminoacylation for protein translation1.66E-02
111GO:0016114: terpenoid biosynthetic process1.78E-02
112GO:0007005: mitochondrion organization1.90E-02
113GO:0016226: iron-sulfur cluster assembly1.90E-02
114GO:0035428: hexose transmembrane transport1.90E-02
115GO:0071369: cellular response to ethylene stimulus2.02E-02
116GO:0006396: RNA processing2.07E-02
117GO:0016117: carotenoid biosynthetic process2.27E-02
118GO:0070417: cellular response to cold2.27E-02
119GO:0042631: cellular response to water deprivation2.40E-02
120GO:0046323: glucose import2.53E-02
121GO:0009741: response to brassinosteroid2.53E-02
122GO:0015986: ATP synthesis coupled proton transport2.66E-02
123GO:0006629: lipid metabolic process2.68E-02
124GO:0019252: starch biosynthetic process2.80E-02
125GO:0000302: response to reactive oxygen species2.94E-02
126GO:0008152: metabolic process3.02E-02
127GO:0071281: cellular response to iron ion3.22E-02
128GO:0046686: response to cadmium ion3.26E-02
129GO:0009627: systemic acquired resistance4.13E-02
130GO:0008219: cell death4.61E-02
131GO:0009817: defense response to fungus, incompatible interaction4.61E-02
132GO:0048481: plant ovule development4.61E-02
133GO:0018298: protein-chromophore linkage4.61E-02
134GO:0006979: response to oxidative stress4.62E-02
135GO:0009813: flavonoid biosynthetic process4.77E-02
136GO:0010218: response to far red light4.94E-02
RankGO TermAdjusted P value
1GO:0046408: chlorophyll synthetase activity0.00E+00
2GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
5GO:0090711: FMN hydrolase activity0.00E+00
6GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
7GO:0046422: violaxanthin de-epoxidase activity0.00E+00
8GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
12GO:0008887: glycerate kinase activity0.00E+00
13GO:0019843: rRNA binding3.33E-12
14GO:0003735: structural constituent of ribosome2.43E-06
15GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.96E-06
16GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.68E-05
17GO:0005528: FK506 binding1.05E-04
18GO:0016491: oxidoreductase activity2.58E-04
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.79E-04
20GO:0045486: naringenin 3-dioxygenase activity2.94E-04
21GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.94E-04
22GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.94E-04
23GO:0050521: alpha-glucan, water dikinase activity2.94E-04
24GO:0008184: glycogen phosphorylase activity2.94E-04
25GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity2.94E-04
26GO:0004853: uroporphyrinogen decarboxylase activity2.94E-04
27GO:0045485: omega-6 fatty acid desaturase activity2.94E-04
28GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.94E-04
29GO:0004645: phosphorylase activity2.94E-04
30GO:0034256: chlorophyll(ide) b reductase activity2.94E-04
31GO:0048038: quinone binding3.75E-04
32GO:0008047: enzyme activator activity6.02E-04
33GO:0047746: chlorophyllase activity6.45E-04
34GO:0042389: omega-3 fatty acid desaturase activity6.45E-04
35GO:0010297: heteropolysaccharide binding6.45E-04
36GO:0052832: inositol monophosphate 3-phosphatase activity6.45E-04
37GO:0033201: alpha-1,4-glucan synthase activity6.45E-04
38GO:0008934: inositol monophosphate 1-phosphatase activity6.45E-04
39GO:0052833: inositol monophosphate 4-phosphatase activity6.45E-04
40GO:0018708: thiol S-methyltransferase activity6.45E-04
41GO:0016630: protochlorophyllide reductase activity6.45E-04
42GO:0008967: phosphoglycolate phosphatase activity6.45E-04
43GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.45E-04
44GO:0000234: phosphoethanolamine N-methyltransferase activity6.45E-04
45GO:0070402: NADPH binding1.04E-03
46GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.04E-03
47GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.04E-03
48GO:0010277: chlorophyllide a oxygenase [overall] activity1.04E-03
49GO:0004373: glycogen (starch) synthase activity1.04E-03
50GO:0002161: aminoacyl-tRNA editing activity1.04E-03
51GO:0045174: glutathione dehydrogenase (ascorbate) activity1.04E-03
52GO:0031409: pigment binding1.25E-03
53GO:0004375: glycine dehydrogenase (decarboxylating) activity1.50E-03
54GO:0019201: nucleotide kinase activity1.50E-03
55GO:0016851: magnesium chelatase activity1.50E-03
56GO:0016149: translation release factor activity, codon specific1.50E-03
57GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.01E-03
58GO:0009011: starch synthase activity2.01E-03
59GO:0047134: protein-disulfide reductase activity2.35E-03
60GO:0003959: NADPH dehydrogenase activity2.56E-03
61GO:0004791: thioredoxin-disulfide reductase activity2.94E-03
62GO:0008200: ion channel inhibitor activity3.16E-03
63GO:0004130: cytochrome-c peroxidase activity3.16E-03
64GO:0051920: peroxiredoxin activity3.81E-03
65GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.81E-03
66GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.81E-03
67GO:0004017: adenylate kinase activity3.81E-03
68GO:0004602: glutathione peroxidase activity3.81E-03
69GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.85E-03
70GO:0016168: chlorophyll binding5.16E-03
71GO:0016209: antioxidant activity5.21E-03
72GO:0004033: aldo-keto reductase (NADP) activity5.21E-03
73GO:0004525: ribonuclease III activity5.21E-03
74GO:0008271: secondary active sulfate transmembrane transporter activity5.98E-03
75GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.98E-03
76GO:0003747: translation release factor activity6.77E-03
77GO:0004222: metalloendopeptidase activity7.03E-03
78GO:0047617: acyl-CoA hydrolase activity7.60E-03
79GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.60E-03
80GO:0005384: manganese ion transmembrane transporter activity7.60E-03
81GO:0016787: hydrolase activity7.87E-03
82GO:0003993: acid phosphatase activity8.45E-03
83GO:0030234: enzyme regulator activity8.48E-03
84GO:0044183: protein binding involved in protein folding9.38E-03
85GO:0047372: acylglycerol lipase activity9.38E-03
86GO:0015116: sulfate transmembrane transporter activity1.03E-02
87GO:0000049: tRNA binding1.03E-02
88GO:0015095: magnesium ion transmembrane transporter activity1.13E-02
89GO:0031072: heat shock protein binding1.13E-02
90GO:0051537: 2 iron, 2 sulfur cluster binding1.13E-02
91GO:0043621: protein self-association1.13E-02
92GO:0004022: alcohol dehydrogenase (NAD) activity1.13E-02
93GO:0008168: methyltransferase activity1.19E-02
94GO:0008266: poly(U) RNA binding1.23E-02
95GO:0051536: iron-sulfur cluster binding1.55E-02
96GO:0031418: L-ascorbic acid binding1.55E-02
97GO:0004857: enzyme inhibitor activity1.55E-02
98GO:0051082: unfolded protein binding2.01E-02
99GO:0015035: protein disulfide oxidoreductase activity2.07E-02
100GO:0003727: single-stranded RNA binding2.14E-02
101GO:0004812: aminoacyl-tRNA ligase activity2.27E-02
102GO:0003723: RNA binding2.47E-02
103GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.53E-02
104GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.59E-02
105GO:0005355: glucose transmembrane transporter activity2.66E-02
106GO:0050662: coenzyme binding2.66E-02
107GO:0051015: actin filament binding3.22E-02
108GO:0008237: metallopeptidase activity3.51E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0005835: fatty acid synthase complex0.00E+00
3GO:0009575: chromoplast stroma0.00E+00
4GO:0009515: granal stacked thylakoid0.00E+00
5GO:0009507: chloroplast8.41E-74
6GO:0009535: chloroplast thylakoid membrane4.03E-52
7GO:0009941: chloroplast envelope2.55E-40
8GO:0009534: chloroplast thylakoid2.62E-39
9GO:0009570: chloroplast stroma1.81E-33
10GO:0009579: thylakoid2.26E-24
11GO:0009543: chloroplast thylakoid lumen3.22E-15
12GO:0031977: thylakoid lumen6.04E-13
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.21E-11
14GO:0031969: chloroplast membrane1.19E-08
15GO:0005840: ribosome6.87E-08
16GO:0010319: stromule4.35E-05
17GO:0030095: chloroplast photosystem II6.35E-05
18GO:0042651: thylakoid membrane1.22E-04
19GO:0009547: plastid ribosome2.94E-04
20GO:0009706: chloroplast inner membrane6.11E-04
21GO:0000427: plastid-encoded plastid RNA polymerase complex6.45E-04
22GO:0031357: integral component of chloroplast inner membrane6.45E-04
23GO:0010287: plastoglobule7.93E-04
24GO:0010007: magnesium chelatase complex1.04E-03
25GO:0030076: light-harvesting complex1.13E-03
26GO:0005960: glycine cleavage complex1.50E-03
27GO:0009654: photosystem II oxygen evolving complex1.53E-03
28GO:0015935: small ribosomal subunit1.68E-03
29GO:0009544: chloroplast ATP synthase complex2.01E-03
30GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.16E-03
31GO:0019898: extrinsic component of membrane3.16E-03
32GO:0009840: chloroplastic endopeptidase Clp complex3.81E-03
33GO:0009533: chloroplast stromal thylakoid4.49E-03
34GO:0009501: amyloplast5.21E-03
35GO:0031982: vesicle5.21E-03
36GO:0005763: mitochondrial small ribosomal subunit6.77E-03
37GO:0000311: plastid large ribosomal subunit1.03E-02
38GO:0032040: small-subunit processome1.03E-02
39GO:0022626: cytosolic ribosome1.52E-02
40GO:0009532: plastid stroma1.78E-02
41GO:0015629: actin cytoskeleton2.02E-02
42GO:0005623: cell2.59E-02
43GO:0009522: photosystem I2.66E-02
44GO:0009523: photosystem II2.80E-02
45GO:0009707: chloroplast outer membrane4.61E-02
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Gene type



Gene DE type