co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G45500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
2	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
3	GO:0010398: xylogalacturonan metabolic process	0.00E+00
4	GO:0006903: vesicle targeting	0.00E+00
5	GO:0036258: multivesicular body assembly	0.00E+00
6	GO:0046680: response to DDT	0.00E+00
7	GO:0006511: ubiquitin-dependent protein catabolic process	1.97E-09
8	GO:0006102: isocitrate metabolic process	5.79E-06
9	GO:0030163: protein catabolic process	2.53E-05
10	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.10E-04
11	GO:0006099: tricarboxylic acid cycle	1.14E-04
12	GO:0006144: purine nucleobase metabolic process	2.65E-04
13	GO:0019628: urate catabolic process	2.65E-04
14	GO:0010421: hydrogen peroxide-mediated programmed cell death	2.65E-04
15	GO:1901430: positive regulation of syringal lignin biosynthetic process	2.65E-04
16	GO:0000032: cell wall mannoprotein biosynthetic process	2.65E-04
17	GO:0051603: proteolysis involved in cellular protein catabolic process	2.91E-04
18	GO:0015031: protein transport	5.50E-04
19	GO:0080026: response to indolebutyric acid	5.83E-04
20	GO:0060151: peroxisome localization	5.83E-04
21	GO:0006996: organelle organization	5.83E-04
22	GO:2000072: regulation of defense response to fungus, incompatible interaction	5.83E-04
23	GO:0046939: nucleotide phosphorylation	5.83E-04
24	GO:0006568: tryptophan metabolic process	5.83E-04
25	GO:0009805: coumarin biosynthetic process	5.83E-04
26	GO:0031124: mRNA 3'-end processing	5.83E-04
27	GO:0051645: Golgi localization	5.83E-04
28	GO:0010372: positive regulation of gibberellin biosynthetic process	5.83E-04
29	GO:0006888: ER to Golgi vesicle-mediated transport	6.13E-04
30	GO:0006499: N-terminal protein myristoylation	7.90E-04
31	GO:0009062: fatty acid catabolic process	9.47E-04
32	GO:0010359: regulation of anion channel activity	9.47E-04
33	GO:0090436: leaf pavement cell development	9.47E-04
34	GO:0090630: activation of GTPase activity	9.47E-04
35	GO:0006517: protein deglycosylation	9.47E-04
36	GO:0033591: response to L-ascorbic acid	9.47E-04
37	GO:0051646: mitochondrion localization	9.47E-04
38	GO:0007031: peroxisome organization	9.75E-04
39	GO:0002679: respiratory burst involved in defense response	1.35E-03
40	GO:0080024: indolebutyric acid metabolic process	1.35E-03
41	GO:0070676: intralumenal vesicle formation	1.35E-03
42	GO:0000187: activation of MAPK activity	1.35E-03
43	GO:0009298: GDP-mannose biosynthetic process	1.35E-03
44	GO:0006612: protein targeting to membrane	1.35E-03
45	GO:0006893: Golgi to plasma membrane transport	1.35E-03
46	GO:0030433: ubiquitin-dependent ERAD pathway	1.58E-03
47	GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter	1.81E-03
48	GO:0010222: stem vascular tissue pattern formation	1.81E-03
49	GO:0010363: regulation of plant-type hypersensitive response	1.81E-03
50	GO:0042147: retrograde transport, endosome to Golgi	2.03E-03
51	GO:0098719: sodium ion import across plasma membrane	2.31E-03
52	GO:0006564: L-serine biosynthetic process	2.31E-03
53	GO:0005513: detection of calcium ion	2.31E-03
54	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.31E-03
55	GO:0032957: inositol trisphosphate metabolic process	2.31E-03
56	GO:0009823: cytokinin catabolic process	2.31E-03
57	GO:0006096: glycolytic process	2.32E-03
58	GO:0046686: response to cadmium ion	2.82E-03
59	GO:0046855: inositol phosphate dephosphorylation	2.85E-03
60	GO:0048827: phyllome development	2.85E-03
61	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	2.85E-03
62	GO:0006555: methionine metabolic process	2.85E-03
63	GO:0060918: auxin transport	2.85E-03
64	GO:0048280: vesicle fusion with Golgi apparatus	3.43E-03
65	GO:0009554: megasporogenesis	3.43E-03
66	GO:0019509: L-methionine salvage from methylthioadenosine	3.43E-03
67	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.43E-03
68	GO:0009612: response to mechanical stimulus	3.43E-03
69	GO:0006886: intracellular protein transport	4.11E-03
70	GO:0009058: biosynthetic process	4.18E-03
71	GO:0050821: protein stabilization	4.69E-03
72	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.69E-03
73	GO:0006402: mRNA catabolic process	4.69E-03
74	GO:0006491: N-glycan processing	4.69E-03
75	GO:0009699: phenylpropanoid biosynthetic process	5.37E-03
76	GO:0006002: fructose 6-phosphate metabolic process	5.37E-03
77	GO:0060321: acceptance of pollen	5.37E-03
78	GO:0006367: transcription initiation from RNA polymerase II promoter	5.37E-03
79	GO:0010120: camalexin biosynthetic process	5.37E-03
80	GO:0048767: root hair elongation	5.74E-03
81	GO:0006379: mRNA cleavage	6.09E-03
82	GO:0046685: response to arsenic-containing substance	6.09E-03
83	GO:0009821: alkaloid biosynthetic process	6.09E-03
84	GO:0010043: response to zinc ion	6.32E-03
85	GO:0051453: regulation of intracellular pH	6.83E-03
86	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.83E-03
87	GO:0045087: innate immune response	6.93E-03
88	GO:0009688: abscisic acid biosynthetic process	7.61E-03
89	GO:0043069: negative regulation of programmed cell death	7.61E-03
90	GO:0006896: Golgi to vacuole transport	7.61E-03
91	GO:0006378: mRNA polyadenylation	8.42E-03
92	GO:0046856: phosphatidylinositol dephosphorylation	8.42E-03
93	GO:0009682: induced systemic resistance	8.42E-03
94	GO:0072593: reactive oxygen species metabolic process	8.42E-03
95	GO:0043085: positive regulation of catalytic activity	8.42E-03
96	GO:0016925: protein sumoylation	9.26E-03
97	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	9.26E-03
98	GO:0006790: sulfur compound metabolic process	9.26E-03
99	GO:0006807: nitrogen compound metabolic process	1.01E-02
100	GO:0006829: zinc II ion transport	1.01E-02
101	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.01E-02
102	GO:0030048: actin filament-based movement	1.01E-02
103	GO:0055114: oxidation-reduction process	1.03E-02
104	GO:0048467: gynoecium development	1.10E-02
105	GO:0034605: cellular response to heat	1.10E-02
106	GO:0009846: pollen germination	1.12E-02
107	GO:0042742: defense response to bacterium	1.18E-02
108	GO:0090351: seedling development	1.20E-02
109	GO:0046854: phosphatidylinositol phosphorylation	1.20E-02
110	GO:0010053: root epidermal cell differentiation	1.20E-02
111	GO:0019853: L-ascorbic acid biosynthetic process	1.20E-02
112	GO:0000162: tryptophan biosynthetic process	1.29E-02
113	GO:0010187: negative regulation of seed germination	1.39E-02
114	GO:0006338: chromatin remodeling	1.39E-02
115	GO:0009626: plant-type hypersensitive response	1.52E-02
116	GO:0015992: proton transport	1.59E-02
117	GO:0019748: secondary metabolic process	1.70E-02
118	GO:0009814: defense response, incompatible interaction	1.70E-02
119	GO:0010227: floral organ abscission	1.81E-02
120	GO:0009306: protein secretion	1.92E-02
121	GO:0010089: xylem development	1.92E-02
122	GO:0009561: megagametogenesis	1.92E-02
123	GO:0051028: mRNA transport	2.03E-02
124	GO:0010051: xylem and phloem pattern formation	2.15E-02
125	GO:0009751: response to salicylic acid	2.17E-02
126	GO:0006662: glycerol ether metabolic process	2.26E-02
127	GO:0045489: pectin biosynthetic process	2.26E-02
128	GO:0006814: sodium ion transport	2.38E-02
129	GO:0009646: response to absence of light	2.38E-02
130	GO:0042744: hydrogen peroxide catabolic process	2.46E-02
131	GO:0055072: iron ion homeostasis	2.51E-02
132	GO:0009851: auxin biosynthetic process	2.51E-02
133	GO:0006623: protein targeting to vacuole	2.51E-02
134	GO:0006891: intra-Golgi vesicle-mediated transport	2.63E-02
135	GO:0006635: fatty acid beta-oxidation	2.63E-02
136	GO:0009630: gravitropism	2.76E-02
137	GO:0031047: gene silencing by RNA	2.76E-02
138	GO:0010090: trichome morphogenesis	2.88E-02
139	GO:0050832: defense response to fungus	2.95E-02
140	GO:0006464: cellular protein modification process	3.02E-02
141	GO:0006914: autophagy	3.02E-02
142	GO:0016567: protein ubiquitination	3.08E-02
143	GO:0006904: vesicle docking involved in exocytosis	3.15E-02
144	GO:0071805: potassium ion transmembrane transport	3.15E-02
145	GO:0016579: protein deubiquitination	3.28E-02
146	GO:0009615: response to virus	3.42E-02
147	GO:0009617: response to bacterium	3.56E-02
148	GO:0009816: defense response to bacterium, incompatible interaction	3.56E-02
149	GO:0009651: response to salt stress	3.69E-02
150	GO:0009627: systemic acquired resistance	3.70E-02
151	GO:0006950: response to stress	3.84E-02
152	GO:0009817: defense response to fungus, incompatible interaction	4.13E-02
153	GO:0009407: toxin catabolic process	4.43E-02
154	GO:0007568: aging	4.58E-02
155	GO:0010119: regulation of stomatal movement	4.58E-02
156	GO:0009631: cold acclimation	4.58E-02
157	GO:0016051: carbohydrate biosynthetic process	4.88E-02
158	GO:0009867: jasmonic acid mediated signaling pathway	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0004846: urate oxidase activity	0.00E+00
2	GO:0016504: peptidase activator activity	0.00E+00
3	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
4	GO:0070577: lysine-acetylated histone binding	0.00E+00
5	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
6	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
7	GO:0004298: threonine-type endopeptidase activity	1.35E-09
8	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.05E-07
9	GO:0004190: aspartic-type endopeptidase activity	6.03E-05
10	GO:0036402: proteasome-activating ATPase activity	1.10E-04
11	GO:0008233: peptidase activity	1.10E-04
12	GO:0031593: polyubiquitin binding	1.10E-04
13	GO:0019786: Atg8-specific protease activity	2.65E-04
14	GO:0046030: inositol trisphosphate phosphatase activity	2.65E-04
15	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	2.65E-04
16	GO:0048037: cofactor binding	2.65E-04
17	GO:0004476: mannose-6-phosphate isomerase activity	2.65E-04
18	GO:0004518: nuclease activity	3.35E-04
19	GO:0030955: potassium ion binding	4.44E-04
20	GO:0004743: pyruvate kinase activity	4.44E-04
21	GO:0004640: phosphoribosylanthranilate isomerase activity	5.83E-04
22	GO:0004776: succinate-CoA ligase (GDP-forming) activity	5.83E-04
23	GO:0052739: phosphatidylserine 1-acylhydrolase activity	5.83E-04
24	GO:0010297: heteropolysaccharide binding	5.83E-04
25	GO:0051879: Hsp90 protein binding	5.83E-04
26	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	5.83E-04
27	GO:0004617: phosphoglycerate dehydrogenase activity	5.83E-04
28	GO:0008805: carbon-monoxide oxygenase activity	5.83E-04
29	GO:0004775: succinate-CoA ligase (ADP-forming) activity	5.83E-04
30	GO:0051731: polynucleotide 5'-hydroxyl-kinase activity	5.83E-04
31	GO:0019779: Atg8 activating enzyme activity	5.83E-04
32	GO:0030742: GTP-dependent protein binding	5.83E-04
33	GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity	9.47E-04
34	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	9.47E-04
35	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	9.47E-04
36	GO:0017025: TBP-class protein binding	9.75E-04
37	GO:0043130: ubiquitin binding	1.20E-03
38	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.35E-03
39	GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity	1.35E-03
40	GO:0019201: nucleotide kinase activity	1.35E-03
41	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.35E-03
42	GO:0051287: NAD binding	1.63E-03
43	GO:0019776: Atg8 ligase activity	1.81E-03
44	GO:0070628: proteasome binding	1.81E-03
45	GO:0008022: protein C-terminus binding	1.81E-03
46	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.81E-03
47	GO:0004031: aldehyde oxidase activity	1.81E-03
48	GO:0050302: indole-3-acetaldehyde oxidase activity	1.81E-03
49	GO:0000287: magnesium ion binding	2.09E-03
50	GO:0031386: protein tag	2.31E-03
51	GO:0008374: O-acyltransferase activity	2.31E-03
52	GO:0019139: cytokinin dehydrogenase activity	2.31E-03
53	GO:0017137: Rab GTPase binding	2.31E-03
54	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.85E-03
55	GO:0035252: UDP-xylosyltransferase activity	2.85E-03
56	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.85E-03
57	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.85E-03
58	GO:0004656: procollagen-proline 4-dioxygenase activity	3.43E-03
59	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.43E-03
60	GO:0004017: adenylate kinase activity	3.43E-03
61	GO:0008320: protein transmembrane transporter activity	4.04E-03
62	GO:0003872: 6-phosphofructokinase activity	4.04E-03
63	GO:0004708: MAP kinase kinase activity	4.69E-03
64	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.93E-03
65	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	5.37E-03
66	GO:0005524: ATP binding	6.09E-03
67	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	6.32E-03
68	GO:0016844: strictosidine synthase activity	6.83E-03
69	GO:0003746: translation elongation factor activity	6.93E-03
70	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	6.93E-03
71	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	7.61E-03
72	GO:0008047: enzyme activator activity	7.61E-03
73	GO:0015386: potassium:proton antiporter activity	8.42E-03
74	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	9.26E-03
75	GO:0046872: metal ion binding	9.80E-03
76	GO:0005198: structural molecule activity	1.01E-02
77	GO:0008131: primary amine oxidase activity	1.10E-02
78	GO:0003774: motor activity	1.10E-02
79	GO:0031624: ubiquitin conjugating enzyme binding	1.10E-02
80	GO:0050660: flavin adenine dinucleotide binding	1.23E-02
81	GO:0031625: ubiquitin protein ligase binding	1.34E-02
82	GO:0031418: L-ascorbic acid binding	1.39E-02
83	GO:0061630: ubiquitin protein ligase activity	1.44E-02
84	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.59E-02
85	GO:0004722: protein serine/threonine phosphatase activity	1.91E-02
86	GO:0047134: protein-disulfide reductase activity	2.03E-02
87	GO:0004402: histone acetyltransferase activity	2.15E-02
88	GO:0005199: structural constituent of cell wall	2.26E-02
89	GO:0046873: metal ion transmembrane transporter activity	2.26E-02
90	GO:0004791: thioredoxin-disulfide reductase activity	2.38E-02
91	GO:0004872: receptor activity	2.51E-02
92	GO:0008565: protein transporter activity	2.59E-02
93	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.63E-02
94	GO:0015385: sodium:proton antiporter activity	2.88E-02
95	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.88E-02
96	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.15E-02
97	GO:0008237: metallopeptidase activity	3.15E-02
98	GO:0016597: amino acid binding	3.28E-02
99	GO:0051213: dioxygenase activity	3.42E-02
100	GO:0008375: acetylglucosaminyltransferase activity	3.70E-02
101	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.70E-02
102	GO:0016887: ATPase activity	3.81E-02
103	GO:0004683: calmodulin-dependent protein kinase activity	3.84E-02
104	GO:0003824: catalytic activity	4.19E-02
105	GO:0016787: hydrolase activity	4.27E-02
106	GO:0005096: GTPase activator activity	4.28E-02
107	GO:0000166: nucleotide binding	4.49E-02
108	GO:0004601: peroxidase activity	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	2.11E-12
2	GO:0005839: proteasome core complex	1.70E-11
3	GO:0005829: cytosol	2.60E-06
4	GO:0031597: cytosolic proteasome complex	1.51E-04
5	GO:0031595: nuclear proteasome complex	1.99E-04
6	GO:0016442: RISC complex	2.65E-04
7	GO:0019773: proteasome core complex, alpha-subunit complex	3.10E-04
8	GO:0008540: proteasome regulatory particle, base subcomplex	4.44E-04
9	GO:0048471: perinuclear region of cytoplasm	5.99E-04
10	GO:0009530: primary cell wall	9.47E-04
11	GO:0030130: clathrin coat of trans-Golgi network vesicle	9.47E-04
12	GO:0030132: clathrin coat of coated pit	9.47E-04
13	GO:0031902: late endosome membrane	1.16E-03
14	GO:0005849: mRNA cleavage factor complex	1.35E-03
15	GO:0005775: vacuolar lumen	1.35E-03
16	GO:0005776: autophagosome	1.81E-03
17	GO:0030660: Golgi-associated vesicle membrane	1.81E-03
18	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.81E-03
19	GO:0005783: endoplasmic reticulum	2.23E-03
20	GO:0005945: 6-phosphofructokinase complex	2.31E-03
21	GO:0000813: ESCRT I complex	2.31E-03
22	GO:0030127: COPII vesicle coat	2.85E-03
23	GO:0030904: retromer complex	2.85E-03
24	GO:0030140: trans-Golgi network transport vesicle	2.85E-03
25	GO:0032580: Golgi cisterna membrane	3.51E-03
26	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	4.04E-03
27	GO:0005737: cytoplasm	4.44E-03
28	GO:0012507: ER to Golgi transport vesicle membrane	4.69E-03
29	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.69E-03
30	GO:0000421: autophagosome membrane	4.69E-03
31	GO:0031982: vesicle	4.69E-03
32	GO:0005774: vacuolar membrane	5.99E-03
33	GO:0031090: organelle membrane	6.09E-03
34	GO:0010494: cytoplasmic stress granule	6.09E-03
35	GO:0005773: vacuole	6.55E-03
36	GO:0005794: Golgi apparatus	7.46E-03
37	GO:0016459: myosin complex	7.61E-03
38	GO:0005802: trans-Golgi network	7.88E-03
39	GO:0005765: lysosomal membrane	8.42E-03
40	GO:0008541: proteasome regulatory particle, lid subcomplex	8.42E-03
41	GO:0005768: endosome	9.85E-03
42	GO:0005635: nuclear envelope	1.29E-02
43	GO:0005777: peroxisome	1.58E-02
44	GO:0031410: cytoplasmic vesicle	1.70E-02
45	GO:0005618: cell wall	2.08E-02
46	GO:0005770: late endosome	2.26E-02
47	GO:0005789: endoplasmic reticulum membrane	2.44E-02
48	GO:0000145: exocyst	2.76E-02
49	GO:0016592: mediator complex	2.76E-02
50	GO:0005778: peroxisomal membrane	3.15E-02
51	GO:0000932: P-body	3.42E-02
52	GO:0005643: nuclear pore	4.13E-02
53	GO:0019005: SCF ubiquitin ligase complex	4.13E-02
54	GO:0009707: chloroplast outer membrane	4.13E-02
55	GO:0000151: ubiquitin ligase complex	4.13E-02
56	GO:0005886: plasma membrane	4.14E-02
57	GO:0000325: plant-type vacuole	4.58E-02
58	GO:0009536: plastid	4.90E-02