co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G44260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:2000469: negative regulation of peroxidase activity	0.00E+00
5	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
6	GO:0046620: regulation of organ growth	1.06E-04
7	GO:0015904: tetracycline transport	1.50E-04
8	GO:0000025: maltose catabolic process	1.50E-04
9	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.50E-04
10	GO:0046520: sphingoid biosynthetic process	1.50E-04
11	GO:0009733: response to auxin	2.14E-04
12	GO:1900033: negative regulation of trichome patterning	3.42E-04
13	GO:0006568: tryptophan metabolic process	3.42E-04
14	GO:0015824: proline transport	3.42E-04
15	GO:0006006: glucose metabolic process	3.54E-04
16	GO:0071398: cellular response to fatty acid	5.61E-04
17	GO:0033591: response to L-ascorbic acid	5.61E-04
18	GO:0010431: seed maturation	6.67E-04
19	GO:0009686: gibberellin biosynthetic process	7.93E-04
20	GO:0010371: regulation of gibberellin biosynthetic process	8.03E-04
21	GO:0010306: rhamnogalacturonan II biosynthetic process	8.03E-04
22	GO:0009416: response to light stimulus	8.29E-04
23	GO:0009755: hormone-mediated signaling pathway	1.06E-03
24	GO:0048629: trichome patterning	1.06E-03
25	GO:0042274: ribosomal small subunit biogenesis	1.06E-03
26	GO:0010438: cellular response to sulfur starvation	1.35E-03
27	GO:0045487: gibberellin catabolic process	1.35E-03
28	GO:0016131: brassinosteroid metabolic process	1.35E-03
29	GO:0003006: developmental process involved in reproduction	1.65E-03
30	GO:0009959: negative gravitropism	1.65E-03
31	GO:1902456: regulation of stomatal opening	1.65E-03
32	GO:0031930: mitochondria-nucleus signaling pathway	1.98E-03
33	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	2.33E-03
34	GO:0030307: positive regulation of cell growth	2.33E-03
35	GO:0010161: red light signaling pathway	2.33E-03
36	GO:0006955: immune response	2.33E-03
37	GO:0009734: auxin-activated signaling pathway	2.63E-03
38	GO:0009704: de-etiolation	2.70E-03
39	GO:2000070: regulation of response to water deprivation	2.70E-03
40	GO:0009819: drought recovery	2.70E-03
41	GO:0006402: mRNA catabolic process	2.70E-03
42	GO:0010439: regulation of glucosinolate biosynthetic process	2.70E-03
43	GO:0048527: lateral root development	2.82E-03
44	GO:0010100: negative regulation of photomorphogenesis	3.08E-03
45	GO:0010099: regulation of photomorphogenesis	3.08E-03
46	GO:0006783: heme biosynthetic process	3.49E-03
47	GO:0009051: pentose-phosphate shunt, oxidative branch	3.49E-03
48	GO:0048507: meristem development	3.49E-03
49	GO:0006631: fatty acid metabolic process	3.67E-03
50	GO:0010018: far-red light signaling pathway	3.91E-03
51	GO:0009926: auxin polar transport	3.98E-03
52	GO:0016441: posttranscriptional gene silencing	4.35E-03
53	GO:0000038: very long-chain fatty acid metabolic process	4.80E-03
54	GO:0009682: induced systemic resistance	4.80E-03
55	GO:0010105: negative regulation of ethylene-activated signaling pathway	5.27E-03
56	GO:0005983: starch catabolic process	5.27E-03
57	GO:0010582: floral meristem determinacy	5.27E-03
58	GO:2000028: regulation of photoperiodism, flowering	5.75E-03
59	GO:0009767: photosynthetic electron transport chain	5.75E-03
60	GO:0010588: cotyledon vascular tissue pattern formation	5.75E-03
61	GO:0010102: lateral root morphogenesis	5.75E-03
62	GO:0045892: negative regulation of transcription, DNA-templated	6.15E-03
63	GO:0048467: gynoecium development	6.25E-03
64	GO:0070588: calcium ion transmembrane transport	6.77E-03
65	GO:0042753: positive regulation of circadian rhythm	7.30E-03
66	GO:0019762: glucosinolate catabolic process	7.30E-03
67	GO:0080147: root hair cell development	7.84E-03
68	GO:0005992: trehalose biosynthetic process	7.84E-03
69	GO:0010187: negative regulation of seed germination	7.84E-03
70	GO:0009753: response to jasmonic acid	8.60E-03
71	GO:0016114: terpenoid biosynthetic process	8.97E-03
72	GO:0016998: cell wall macromolecule catabolic process	8.97E-03
73	GO:0006306: DNA methylation	8.97E-03
74	GO:0009625: response to insect	1.02E-02
75	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.02E-02
76	GO:0009693: ethylene biosynthetic process	1.02E-02
77	GO:0071215: cellular response to abscisic acid stimulus	1.02E-02
78	GO:0080022: primary root development	1.20E-02
79	GO:0010087: phloem or xylem histogenesis	1.20E-02
80	GO:0010118: stomatal movement	1.20E-02
81	GO:0042335: cuticle development	1.20E-02
82	GO:0040008: regulation of growth	1.26E-02
83	GO:0010182: sugar mediated signaling pathway	1.27E-02
84	GO:0048868: pollen tube development	1.27E-02
85	GO:0009741: response to brassinosteroid	1.27E-02
86	GO:0010268: brassinosteroid homeostasis	1.27E-02
87	GO:0010305: leaf vascular tissue pattern formation	1.27E-02
88	GO:0010150: leaf senescence	1.32E-02
89	GO:0048544: recognition of pollen	1.34E-02
90	GO:0009646: response to absence of light	1.34E-02
91	GO:0000302: response to reactive oxygen species	1.47E-02
92	GO:0071554: cell wall organization or biogenesis	1.47E-02
93	GO:0009739: response to gibberellin	1.48E-02
94	GO:0010583: response to cyclopentenone	1.55E-02
95	GO:0009639: response to red or far red light	1.69E-02
96	GO:0010252: auxin homeostasis	1.69E-02
97	GO:0010029: regulation of seed germination	1.99E-02
98	GO:0010411: xyloglucan metabolic process	2.15E-02
99	GO:0048573: photoperiodism, flowering	2.15E-02
100	GO:0015995: chlorophyll biosynthetic process	2.15E-02
101	GO:0009860: pollen tube growth	2.20E-02
102	GO:0009723: response to ethylene	2.37E-02
103	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.63E-02
104	GO:0006865: amino acid transport	2.65E-02
105	GO:0009867: jasmonic acid mediated signaling pathway	2.74E-02
106	GO:0044550: secondary metabolite biosynthetic process	2.76E-02
107	GO:0034599: cellular response to oxidative stress	2.83E-02
108	GO:0055114: oxidation-reduction process	2.94E-02
109	GO:0007165: signal transduction	3.25E-02
110	GO:0009640: photomorphogenesis	3.28E-02
111	GO:0042546: cell wall biogenesis	3.37E-02
112	GO:0009644: response to high light intensity	3.47E-02
113	GO:0008643: carbohydrate transport	3.47E-02
114	GO:0009751: response to salicylic acid	3.69E-02
115	GO:0009585: red, far-red light phototransduction	4.05E-02
116	GO:0051603: proteolysis involved in cellular protein catabolic process	4.15E-02
117	GO:0048367: shoot system development	4.67E-02
118	GO:0006357: regulation of transcription from RNA polymerase II promoter	4.93E-02
119	GO:0009740: gibberellic acid mediated signaling pathway	4.99E-02
120	GO:0016569: covalent chromatin modification	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0008395: steroid hydroxylase activity	1.50E-04
3	GO:0000170: sphingosine hydroxylase activity	1.50E-04
4	GO:0050139: nicotinate-N-glucosyltransferase activity	1.50E-04
5	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.50E-04
6	GO:0042834: peptidoglycan binding	1.50E-04
7	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.50E-04
8	GO:0010313: phytochrome binding	1.50E-04
9	GO:0004134: 4-alpha-glucanotransferase activity	1.50E-04
10	GO:0045543: gibberellin 2-beta-dioxygenase activity	3.42E-04
11	GO:0042284: sphingolipid delta-4 desaturase activity	3.42E-04
12	GO:0008493: tetracycline transporter activity	3.42E-04
13	GO:0015193: L-proline transmembrane transporter activity	5.61E-04
14	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	8.03E-04
15	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.06E-03
16	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.35E-03
17	GO:0016688: L-ascorbate peroxidase activity	1.65E-03
18	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	1.65E-03
19	GO:0080030: methyl indole-3-acetate esterase activity	1.65E-03
20	GO:0004709: MAP kinase kinase kinase activity	1.65E-03
21	GO:0004130: cytochrome-c peroxidase activity	1.65E-03
22	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.98E-03
23	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.98E-03
24	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.49E-03
25	GO:0004805: trehalose-phosphatase activity	4.35E-03
26	GO:0030234: enzyme regulator activity	4.35E-03
27	GO:0000976: transcription regulatory region sequence-specific DNA binding	5.27E-03
28	GO:0005262: calcium channel activity	5.75E-03
29	GO:0004871: signal transducer activity	6.39E-03
30	GO:0008146: sulfotransferase activity	6.77E-03
31	GO:0016874: ligase activity	7.17E-03
32	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	7.30E-03
33	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	7.30E-03
34	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	7.30E-03
35	GO:0031418: L-ascorbic acid binding	7.84E-03
36	GO:0005528: FK506 binding	7.84E-03
37	GO:0005345: purine nucleobase transmembrane transporter activity	8.40E-03
38	GO:0003964: RNA-directed DNA polymerase activity	8.97E-03
39	GO:0010333: terpene synthase activity	8.97E-03
40	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	9.80E-03
41	GO:0005506: iron ion binding	1.06E-02
42	GO:0003727: single-stranded RNA binding	1.08E-02
43	GO:0008514: organic anion transmembrane transporter activity	1.08E-02
44	GO:0005199: structural constituent of cell wall	1.27E-02
45	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.27E-02
46	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.47E-02
47	GO:0016759: cellulose synthase activity	1.69E-02
48	GO:0005200: structural constituent of cytoskeleton	1.76E-02
49	GO:0016413: O-acetyltransferase activity	1.84E-02
50	GO:0016788: hydrolase activity, acting on ester bonds	2.09E-02
51	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.15E-02
52	GO:0020037: heme binding	2.16E-02
53	GO:0019825: oxygen binding	2.54E-02
54	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.56E-02
55	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.91E-02
56	GO:0050661: NADP binding	3.00E-02
57	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	3.04E-02
58	GO:0004185: serine-type carboxypeptidase activity	3.28E-02
59	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.28E-02
60	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.38E-02
61	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	3.38E-02
62	GO:0043621: protein self-association	3.47E-02
63	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.66E-02
64	GO:0015171: amino acid transmembrane transporter activity	4.36E-02
65	GO:0031625: ubiquitin protein ligase binding	4.36E-02
66	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.88E-02
67	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.88E-02
68	GO:0004650: polygalacturonase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009654: photosystem II oxygen evolving complex	6.09E-04
2	GO:0009544: chloroplast ATP synthase complex	1.06E-03
3	GO:0019898: extrinsic component of membrane	1.23E-03
4	GO:0009501: amyloplast	2.70E-03
5	GO:0030095: chloroplast photosystem II	6.25E-03
6	GO:0009543: chloroplast thylakoid lumen	9.54E-03
7	GO:0030529: intracellular ribonucleoprotein complex	1.92E-02
8	GO:0000151: ubiquitin ligase complex	2.31E-02
9	GO:0031977: thylakoid lumen	3.09E-02
10	GO:0090406: pollen tube	3.28E-02
11	GO:0005794: Golgi apparatus	3.80E-02
12	GO:0005834: heterotrimeric G-protein complex	4.78E-02