co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G43750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0015995: chlorophyll biosynthetic process	6.72E-11
3	GO:0015979: photosynthesis	2.15E-09
4	GO:0030388: fructose 1,6-bisphosphate metabolic process	8.92E-07
5	GO:0010206: photosystem II repair	2.21E-06
6	GO:0090391: granum assembly	3.35E-06
7	GO:0006000: fructose metabolic process	3.35E-06
8	GO:0009773: photosynthetic electron transport in photosystem I	5.28E-06
9	GO:0005983: starch catabolic process	6.74E-06
10	GO:0009735: response to cytokinin	1.02E-05
11	GO:0010196: nonphotochemical quenching	6.86E-05
12	GO:0032544: plastid translation	1.12E-04
13	GO:0006002: fructose 6-phosphate metabolic process	1.12E-04
14	GO:0071588: hydrogen peroxide mediated signaling pathway	1.33E-04
15	GO:0000023: maltose metabolic process	1.33E-04
16	GO:0000025: maltose catabolic process	1.33E-04
17	GO:0005980: glycogen catabolic process	1.33E-04
18	GO:0009631: cold acclimation	2.41E-04
19	GO:0055114: oxidation-reduction process	2.69E-04
20	GO:0034599: cellular response to oxidative stress	2.90E-04
21	GO:0006094: gluconeogenesis	3.02E-04
22	GO:0005986: sucrose biosynthetic process	3.02E-04
23	GO:0005976: polysaccharide metabolic process	3.07E-04
24	GO:0010353: response to trehalose	3.07E-04
25	GO:0010207: photosystem II assembly	3.42E-04
26	GO:0006636: unsaturated fatty acid biosynthetic process	4.27E-04
27	GO:0006518: peptide metabolic process	5.06E-04
28	GO:0061077: chaperone-mediated protein folding	5.72E-04
29	GO:0071484: cellular response to light intensity	7.24E-04
30	GO:0010021: amylopectin biosynthetic process	9.59E-04
31	GO:0006109: regulation of carbohydrate metabolic process	9.59E-04
32	GO:0045727: positive regulation of translation	9.59E-04
33	GO:0000302: response to reactive oxygen species	1.13E-03
34	GO:0006461: protein complex assembly	1.21E-03
35	GO:1902456: regulation of stomatal opening	1.49E-03
36	GO:0010190: cytochrome b6f complex assembly	1.49E-03
37	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.49E-03
38	GO:0010027: thylakoid membrane organization	1.61E-03
39	GO:0009854: oxidative photosynthetic carbon pathway	1.78E-03
40	GO:0010019: chloroplast-nucleus signaling pathway	1.78E-03
41	GO:0016311: dephosphorylation	1.99E-03
42	GO:0009610: response to symbiotic fungus	2.09E-03
43	GO:0009772: photosynthetic electron transport in photosystem II	2.09E-03
44	GO:0030091: protein repair	2.42E-03
45	GO:0009642: response to light intensity	2.42E-03
46	GO:0009657: plastid organization	2.77E-03
47	GO:0042254: ribosome biogenesis	3.05E-03
48	GO:0006783: heme biosynthetic process	3.13E-03
49	GO:0006754: ATP biosynthetic process	3.13E-03
50	GO:0010205: photoinhibition	3.50E-03
51	GO:0009641: shade avoidance	3.89E-03
52	GO:0006782: protoporphyrinogen IX biosynthetic process	3.89E-03
53	GO:0009089: lysine biosynthetic process via diaminopimelate	4.30E-03
54	GO:0043085: positive regulation of catalytic activity	4.30E-03
55	GO:0000272: polysaccharide catabolic process	4.30E-03
56	GO:0009750: response to fructose	4.30E-03
57	GO:0018119: peptidyl-cysteine S-nitrosylation	4.30E-03
58	GO:0006412: translation	4.56E-03
59	GO:0018107: peptidyl-threonine phosphorylation	5.15E-03
60	GO:0010223: secondary shoot formation	5.60E-03
61	GO:0009266: response to temperature stimulus	5.60E-03
62	GO:0019253: reductive pentose-phosphate cycle	5.60E-03
63	GO:0071732: cellular response to nitric oxide	6.06E-03
64	GO:0005985: sucrose metabolic process	6.06E-03
65	GO:0009768: photosynthesis, light harvesting in photosystem I	7.51E-03
66	GO:0016114: terpenoid biosynthetic process	8.02E-03
67	GO:0035428: hexose transmembrane transport	8.55E-03
68	GO:0071369: cellular response to ethylene stimulus	9.08E-03
69	GO:0042744: hydrogen peroxide catabolic process	9.25E-03
70	GO:0070417: cellular response to cold	1.02E-02
71	GO:0006633: fatty acid biosynthetic process	1.02E-02
72	GO:0042631: cellular response to water deprivation	1.08E-02
73	GO:0006662: glycerol ether metabolic process	1.13E-02
74	GO:0046323: glucose import	1.13E-02
75	GO:0015986: ATP synthesis coupled proton transport	1.19E-02
76	GO:0019252: starch biosynthetic process	1.25E-02
77	GO:0071281: cellular response to iron ion	1.44E-02
78	GO:0045893: positive regulation of transcription, DNA-templated	1.58E-02
79	GO:0009658: chloroplast organization	1.74E-02
80	GO:0018298: protein-chromophore linkage	2.06E-02
81	GO:0009817: defense response to fungus, incompatible interaction	2.06E-02
82	GO:0010218: response to far red light	2.21E-02
83	GO:0007568: aging	2.29E-02
84	GO:0009637: response to blue light	2.44E-02
85	GO:0009853: photorespiration	2.44E-02
86	GO:0010114: response to red light	2.92E-02
87	GO:0009793: embryo development ending in seed dormancy	2.99E-02
88	GO:0006629: lipid metabolic process	3.19E-02
89	GO:0016310: phosphorylation	3.26E-02
90	GO:0006979: response to oxidative stress	3.26E-02
91	GO:0006364: rRNA processing	3.62E-02
92	GO:0043086: negative regulation of catalytic activity	4.07E-02
93	GO:0009409: response to cold	4.68E-02
94	GO:0018105: peptidyl-serine phosphorylation	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0008887: glycerate kinase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0005528: FK506 binding	3.10E-07
8	GO:0019843: rRNA binding	4.78E-07
9	GO:0010297: heteropolysaccharide binding	8.92E-07
10	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	8.92E-07
11	GO:0016851: magnesium chelatase activity	7.85E-06
12	GO:0004130: cytochrome-c peroxidase activity	3.63E-05
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.74E-05
14	GO:0004134: 4-alpha-glucanotransferase activity	1.33E-04
15	GO:0004645: phosphorylase activity	1.33E-04
16	GO:0050521: alpha-glucan, water dikinase activity	1.33E-04
17	GO:0008184: glycogen phosphorylase activity	1.33E-04
18	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.33E-04
19	GO:0004853: uroporphyrinogen decarboxylase activity	1.33E-04
20	GO:0045485: omega-6 fatty acid desaturase activity	1.33E-04
21	GO:0031072: heat shock protein binding	3.02E-04
22	GO:0018708: thiol S-methyltransferase activity	3.07E-04
23	GO:0016630: protochlorophyllide reductase activity	3.07E-04
24	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.07E-04
25	GO:0042389: omega-3 fatty acid desaturase activity	3.07E-04
26	GO:0033201: alpha-1,4-glucan synthase activity	3.07E-04
27	GO:0008967: phosphoglycolate phosphatase activity	3.07E-04
28	GO:0070402: NADPH binding	5.06E-04
29	GO:0004324: ferredoxin-NADP+ reductase activity	5.06E-04
30	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.06E-04
31	GO:0004373: glycogen (starch) synthase activity	5.06E-04
32	GO:0003735: structural constituent of ribosome	5.57E-04
33	GO:0019201: nucleotide kinase activity	7.24E-04
34	GO:0016491: oxidoreductase activity	8.97E-04
35	GO:0009011: starch synthase activity	9.59E-04
36	GO:0003959: NADPH dehydrogenase activity	1.21E-03
37	GO:0016688: L-ascorbate peroxidase activity	1.49E-03
38	GO:0008200: ion channel inhibitor activity	1.49E-03
39	GO:2001070: starch binding	1.49E-03
40	GO:0004017: adenylate kinase activity	1.78E-03
41	GO:0004602: glutathione peroxidase activity	1.78E-03
42	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.78E-03
43	GO:0004033: aldo-keto reductase (NADP) activity	2.42E-03
44	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.77E-03
45	GO:0030234: enzyme regulator activity	3.89E-03
46	GO:0008047: enzyme activator activity	3.89E-03
47	GO:0044183: protein binding involved in protein folding	4.30E-03
48	GO:0047372: acylglycerol lipase activity	4.30E-03
49	GO:0015386: potassium:proton antiporter activity	4.30E-03
50	GO:0008266: poly(U) RNA binding	5.60E-03
51	GO:0051082: unfolded protein binding	6.48E-03
52	GO:0031409: pigment binding	6.53E-03
53	GO:0004857: enzyme inhibitor activity	7.01E-03
54	GO:0015079: potassium ion transmembrane transporter activity	7.51E-03
55	GO:0003756: protein disulfide isomerase activity	9.63E-03
56	GO:0047134: protein-disulfide reductase activity	1.02E-02
57	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.13E-02
58	GO:0005355: glucose transmembrane transporter activity	1.19E-02
59	GO:0050662: coenzyme binding	1.19E-02
60	GO:0004791: thioredoxin-disulfide reductase activity	1.19E-02
61	GO:0048038: quinone binding	1.32E-02
62	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.44E-02
63	GO:0016168: chlorophyll binding	1.78E-02
64	GO:0004222: metalloendopeptidase activity	2.21E-02
65	GO:0003746: translation elongation factor activity	2.44E-02
66	GO:0003993: acid phosphatase activity	2.52E-02
67	GO:0016787: hydrolase activity	2.67E-02
68	GO:0051537: 2 iron, 2 sulfur cluster binding	3.09E-02
69	GO:0015035: protein disulfide oxidoreductase activity	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009507: chloroplast	6.31E-51
4	GO:0009534: chloroplast thylakoid	1.02E-44
5	GO:0009535: chloroplast thylakoid membrane	5.64E-37
6	GO:0009941: chloroplast envelope	8.59E-32
7	GO:0009570: chloroplast stroma	4.82E-23
8	GO:0009579: thylakoid	5.14E-18
9	GO:0009543: chloroplast thylakoid lumen	3.06E-13
10	GO:0031977: thylakoid lumen	8.68E-12
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.21E-06
12	GO:0010007: magnesium chelatase complex	3.35E-06
13	GO:0009706: chloroplast inner membrane	9.53E-05
14	GO:0005840: ribosome	1.18E-04
15	GO:0031357: integral component of chloroplast inner membrane	3.07E-04
16	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.07E-04
17	GO:0030095: chloroplast photosystem II	3.42E-04
18	GO:0031969: chloroplast membrane	6.85E-04
19	GO:0009544: chloroplast ATP synthase complex	9.59E-04
20	GO:0009523: photosystem II	1.06E-03
21	GO:0010287: plastoglobule	1.07E-03
22	GO:0010319: stromule	1.44E-03
23	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.49E-03
24	GO:0009533: chloroplast stromal thylakoid	2.09E-03
25	GO:0009501: amyloplast	2.42E-03
26	GO:0030076: light-harvesting complex	6.06E-03
27	GO:0042651: thylakoid membrane	7.51E-03
28	GO:0015935: small ribosomal subunit	8.02E-03
29	GO:0009522: photosystem I	1.19E-02
30	GO:0016020: membrane	1.99E-02
31	GO:0009707: chloroplast outer membrane	2.06E-02
32	GO:0015934: large ribosomal subunit	2.29E-02