co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G43600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042821: pyridoxal biosynthetic process	0.00E+00
2	GO:0090279: regulation of calcium ion import	0.00E+00
3	GO:0042820: vitamin B6 catabolic process	0.00E+00
4	GO:0006480: N-terminal protein amino acid methylation	0.00E+00
5	GO:0015882: L-ascorbic acid transport	0.00E+00
6	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
7	GO:0008298: intracellular mRNA localization	0.00E+00
8	GO:0071474: cellular hyperosmotic response	0.00E+00
9	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
10	GO:0043488: regulation of mRNA stability	0.00E+00
11	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
12	GO:0009658: chloroplast organization	1.14E-08
13	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.32E-06
14	GO:0005977: glycogen metabolic process	8.46E-06
15	GO:0010239: chloroplast mRNA processing	1.93E-05
16	GO:0006021: inositol biosynthetic process	3.53E-05
17	GO:0010021: amylopectin biosynthetic process	3.53E-05
18	GO:1901259: chloroplast rRNA processing	1.15E-04
19	GO:0009791: post-embryonic development	1.99E-04
20	GO:0019252: starch biosynthetic process	1.99E-04
21	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	2.22E-04
22	GO:0031426: polycistronic mRNA processing	2.22E-04
23	GO:0006637: acyl-CoA metabolic process	2.22E-04
24	GO:0043953: protein transport by the Tat complex	2.22E-04
25	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	2.22E-04
26	GO:1904966: positive regulation of vitamin E biosynthetic process	2.22E-04
27	GO:0051775: response to redox state	2.22E-04
28	GO:0010063: positive regulation of trichoblast fate specification	2.22E-04
29	GO:0006659: phosphatidylserine biosynthetic process	2.22E-04
30	GO:1904964: positive regulation of phytol biosynthetic process	2.22E-04
31	GO:0065002: intracellular protein transmembrane transport	2.22E-04
32	GO:0070574: cadmium ion transmembrane transport	2.22E-04
33	GO:0010028: xanthophyll cycle	2.22E-04
34	GO:0000476: maturation of 4.5S rRNA	2.22E-04
35	GO:0009443: pyridoxal 5'-phosphate salvage	2.22E-04
36	GO:0000967: rRNA 5'-end processing	2.22E-04
37	GO:0009657: plastid organization	2.40E-04
38	GO:0032502: developmental process	2.40E-04
39	GO:0010027: thylakoid membrane organization	3.60E-04
40	GO:1900871: chloroplast mRNA modification	4.95E-04
41	GO:0010541: acropetal auxin transport	4.95E-04
42	GO:0018026: peptidyl-lysine monomethylation	4.95E-04
43	GO:0060151: peroxisome localization	4.95E-04
44	GO:0000256: allantoin catabolic process	4.95E-04
45	GO:1904143: positive regulation of carotenoid biosynthetic process	4.95E-04
46	GO:0051262: protein tetramerization	4.95E-04
47	GO:0034470: ncRNA processing	4.95E-04
48	GO:0051645: Golgi localization	4.95E-04
49	GO:0030048: actin filament-based movement	6.09E-04
50	GO:0010020: chloroplast fission	6.86E-04
51	GO:0048467: gynoecium development	6.86E-04
52	GO:0019853: L-ascorbic acid biosynthetic process	7.67E-04
53	GO:0006954: inflammatory response	8.05E-04
54	GO:0010136: ureide catabolic process	8.05E-04
55	GO:0034051: negative regulation of plant-type hypersensitive response	8.05E-04
56	GO:0051646: mitochondrion localization	8.05E-04
57	GO:0010160: formation of animal organ boundary	8.05E-04
58	GO:0090436: leaf pavement cell development	8.05E-04
59	GO:0009226: nucleotide-sugar biosynthetic process	1.15E-03
60	GO:0006145: purine nucleobase catabolic process	1.15E-03
61	GO:0051016: barbed-end actin filament capping	1.15E-03
62	GO:0016556: mRNA modification	1.15E-03
63	GO:0090308: regulation of methylation-dependent chromatin silencing	1.15E-03
64	GO:0010071: root meristem specification	1.15E-03
65	GO:0009152: purine ribonucleotide biosynthetic process	1.15E-03
66	GO:0046653: tetrahydrofolate metabolic process	1.15E-03
67	GO:0006107: oxaloacetate metabolic process	1.15E-03
68	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.15E-03
69	GO:0005975: carbohydrate metabolic process	1.52E-03
70	GO:0006734: NADH metabolic process	1.53E-03
71	GO:0010037: response to carbon dioxide	1.53E-03
72	GO:0015976: carbon utilization	1.53E-03
73	GO:2000122: negative regulation of stomatal complex development	1.53E-03
74	GO:0009958: positive gravitropism	1.84E-03
75	GO:0032543: mitochondrial translation	1.95E-03
76	GO:0006564: L-serine biosynthetic process	1.95E-03
77	GO:0045038: protein import into chloroplast thylakoid membrane	1.95E-03
78	GO:0080110: sporopollenin biosynthetic process	1.95E-03
79	GO:0008654: phospholipid biosynthetic process	2.12E-03
80	GO:0046855: inositol phosphate dephosphorylation	2.40E-03
81	GO:0050665: hydrogen peroxide biosynthetic process	2.40E-03
82	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.40E-03
83	GO:0060918: auxin transport	2.40E-03
84	GO:0048280: vesicle fusion with Golgi apparatus	2.89E-03
85	GO:0010189: vitamin E biosynthetic process	2.89E-03
86	GO:0009854: oxidative photosynthetic carbon pathway	2.89E-03
87	GO:0071333: cellular response to glucose stimulus	2.89E-03
88	GO:0071470: cellular response to osmotic stress	2.89E-03
89	GO:1900056: negative regulation of leaf senescence	3.40E-03
90	GO:0051693: actin filament capping	3.40E-03
91	GO:0048437: floral organ development	3.40E-03
92	GO:0015995: chlorophyll biosynthetic process	3.84E-03
93	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.94E-03
94	GO:0042255: ribosome assembly	3.94E-03
95	GO:0009690: cytokinin metabolic process	3.94E-03
96	GO:0006353: DNA-templated transcription, termination	3.94E-03
97	GO:0006875: cellular metal ion homeostasis	3.94E-03
98	GO:0010078: maintenance of root meristem identity	3.94E-03
99	GO:0016559: peroxisome fission	3.94E-03
100	GO:0010204: defense response signaling pathway, resistance gene-independent	4.51E-03
101	GO:0043562: cellular response to nitrogen levels	4.51E-03
102	GO:0017004: cytochrome complex assembly	4.51E-03
103	GO:0048527: lateral root development	4.91E-03
104	GO:0048507: meristem development	5.11E-03
105	GO:0000902: cell morphogenesis	5.11E-03
106	GO:0098656: anion transmembrane transport	5.11E-03
107	GO:0008380: RNA splicing	5.34E-03
108	GO:0010380: regulation of chlorophyll biosynthetic process	5.74E-03
109	GO:0005982: starch metabolic process	5.74E-03
110	GO:0006896: Golgi to vacuole transport	6.38E-03
111	GO:0006995: cellular response to nitrogen starvation	6.38E-03
112	GO:0072593: reactive oxygen species metabolic process	7.06E-03
113	GO:0006415: translational termination	7.06E-03
114	GO:0010216: maintenance of DNA methylation	7.06E-03
115	GO:0009684: indoleacetic acid biosynthetic process	7.06E-03
116	GO:0008361: regulation of cell size	7.76E-03
117	GO:0006790: sulfur compound metabolic process	7.76E-03
118	GO:0006970: response to osmotic stress	8.16E-03
119	GO:0006108: malate metabolic process	8.48E-03
120	GO:0030036: actin cytoskeleton organization	8.48E-03
121	GO:0009718: anthocyanin-containing compound biosynthetic process	8.48E-03
122	GO:0010588: cotyledon vascular tissue pattern formation	8.48E-03
123	GO:0009416: response to light stimulus	8.76E-03
124	GO:0006541: glutamine metabolic process	9.23E-03
125	GO:0007015: actin filament organization	9.23E-03
126	GO:0010540: basipetal auxin transport	9.23E-03
127	GO:0046854: phosphatidylinositol phosphorylation	1.00E-02
128	GO:0048367: shoot system development	1.14E-02
129	GO:0007017: microtubule-based process	1.24E-02
130	GO:0006418: tRNA aminoacylation for protein translation	1.24E-02
131	GO:0055085: transmembrane transport	1.26E-02
132	GO:0019748: secondary metabolic process	1.42E-02
133	GO:0071215: cellular response to abscisic acid stimulus	1.51E-02
134	GO:0009686: gibberellin biosynthetic process	1.51E-02
135	GO:0006012: galactose metabolic process	1.51E-02
136	GO:0042127: regulation of cell proliferation	1.60E-02
137	GO:0009306: protein secretion	1.60E-02
138	GO:0010584: pollen exine formation	1.60E-02
139	GO:0048443: stamen development	1.60E-02
140	GO:0042147: retrograde transport, endosome to Golgi	1.70E-02
141	GO:0080022: primary root development	1.79E-02
142	GO:0010087: phloem or xylem histogenesis	1.79E-02
143	GO:0006520: cellular amino acid metabolic process	1.89E-02
144	GO:0071472: cellular response to salt stress	1.89E-02
145	GO:0010154: fruit development	1.89E-02
146	GO:0010305: leaf vascular tissue pattern formation	1.89E-02
147	GO:0009741: response to brassinosteroid	1.89E-02
148	GO:0010268: brassinosteroid homeostasis	1.89E-02
149	GO:0009646: response to absence of light	1.99E-02
150	GO:0048825: cotyledon development	2.09E-02
151	GO:0055072: iron ion homeostasis	2.09E-02
152	GO:0009851: auxin biosynthetic process	2.09E-02
153	GO:0006623: protein targeting to vacuole	2.09E-02
154	GO:0006891: intra-Golgi vesicle-mediated transport	2.19E-02
155	GO:0016132: brassinosteroid biosynthetic process	2.19E-02
156	GO:0009451: RNA modification	2.37E-02
157	GO:0010090: trichome morphogenesis	2.41E-02
158	GO:1901657: glycosyl compound metabolic process	2.41E-02
159	GO:0010228: vegetative to reproductive phase transition of meristem	2.42E-02
160	GO:0009639: response to red or far red light	2.52E-02
161	GO:0009567: double fertilization forming a zygote and endosperm	2.52E-02
162	GO:0016125: sterol metabolic process	2.52E-02
163	GO:0009793: embryo development ending in seed dormancy	3.19E-02
164	GO:0006888: ER to Golgi vesicle-mediated transport	3.20E-02
165	GO:0016049: cell growth	3.32E-02
166	GO:0016311: dephosphorylation	3.32E-02
167	GO:0018298: protein-chromophore linkage	3.45E-02
168	GO:0048481: plant ovule development	3.45E-02
169	GO:0006811: ion transport	3.70E-02
170	GO:0010218: response to far red light	3.70E-02
171	GO:0009910: negative regulation of flower development	3.82E-02
172	GO:0010119: regulation of stomatal movement	3.82E-02
173	GO:0006865: amino acid transport	3.95E-02
174	GO:0016051: carbohydrate biosynthetic process	4.08E-02
175	GO:0009637: response to blue light	4.08E-02
176	GO:0009853: photorespiration	4.08E-02
177	GO:0034599: cellular response to oxidative stress	4.21E-02
178	GO:0006099: tricarboxylic acid cycle	4.21E-02
179	GO:0030001: metal ion transport	4.47E-02
180	GO:0009640: photomorphogenesis	4.88E-02
181	GO:0009926: auxin polar transport	4.88E-02
182	GO:0051707: response to other organism	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
2	GO:0010276: phytol kinase activity	0.00E+00
3	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
4	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
5	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
6	GO:0004823: leucine-tRNA ligase activity	0.00E+00
7	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
8	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
9	GO:0004038: allantoinase activity	0.00E+00
10	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
11	GO:0019156: isoamylase activity	2.32E-06
12	GO:0004556: alpha-amylase activity	8.30E-05
13	GO:0042802: identical protein binding	1.84E-04
14	GO:0004033: aldo-keto reductase (NADP) activity	1.94E-04
15	GO:0005080: protein kinase C binding	2.22E-04
16	GO:0008242: omega peptidase activity	2.22E-04
17	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.22E-04
18	GO:0008746: NAD(P)+ transhydrogenase activity	2.22E-04
19	GO:0004328: formamidase activity	2.22E-04
20	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.22E-04
21	GO:0005227: calcium activated cation channel activity	2.22E-04
22	GO:0051777: ent-kaurenoate oxidase activity	2.22E-04
23	GO:0004856: xylulokinase activity	2.22E-04
24	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	4.95E-04
25	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.95E-04
26	GO:0008934: inositol monophosphate 1-phosphatase activity	4.95E-04
27	GO:0052833: inositol monophosphate 4-phosphatase activity	4.95E-04
28	GO:0004512: inositol-3-phosphate synthase activity	4.95E-04
29	GO:0034722: gamma-glutamyl-peptidase activity	4.95E-04
30	GO:0004103: choline kinase activity	4.95E-04
31	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	4.95E-04
32	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.95E-04
33	GO:0004617: phosphoglycerate dehydrogenase activity	4.95E-04
34	GO:0052832: inositol monophosphate 3-phosphatase activity	4.95E-04
35	GO:0003774: motor activity	6.86E-04
36	GO:0003993: acid phosphatase activity	7.26E-04
37	GO:0003913: DNA photolyase activity	8.05E-04
38	GO:0002161: aminoacyl-tRNA editing activity	8.05E-04
39	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	8.05E-04
40	GO:0070402: NADPH binding	8.05E-04
41	GO:0008864: formyltetrahydrofolate deformylase activity	8.05E-04
42	GO:0015086: cadmium ion transmembrane transporter activity	1.15E-03
43	GO:0016851: magnesium chelatase activity	1.15E-03
44	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.15E-03
45	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.15E-03
46	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.15E-03
47	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.15E-03
48	GO:0048027: mRNA 5'-UTR binding	1.15E-03
49	GO:0009011: starch synthase activity	1.53E-03
50	GO:0043495: protein anchor	1.53E-03
51	GO:0008891: glycolate oxidase activity	1.53E-03
52	GO:0016279: protein-lysine N-methyltransferase activity	1.53E-03
53	GO:0004045: aminoacyl-tRNA hydrolase activity	1.53E-03
54	GO:0080032: methyl jasmonate esterase activity	1.53E-03
55	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.95E-03
56	GO:0005275: amine transmembrane transporter activity	1.95E-03
57	GO:0016846: carbon-sulfur lyase activity	1.95E-03
58	GO:0042578: phosphoric ester hydrolase activity	2.40E-03
59	GO:0016615: malate dehydrogenase activity	2.40E-03
60	GO:0008200: ion channel inhibitor activity	2.40E-03
61	GO:2001070: starch binding	2.40E-03
62	GO:0004605: phosphatidate cytidylyltransferase activity	2.40E-03
63	GO:0080030: methyl indole-3-acetate esterase activity	2.40E-03
64	GO:0030060: L-malate dehydrogenase activity	2.89E-03
65	GO:0005261: cation channel activity	2.89E-03
66	GO:0003730: mRNA 3'-UTR binding	2.89E-03
67	GO:0008195: phosphatidate phosphatase activity	2.89E-03
68	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.89E-03
69	GO:0019899: enzyme binding	3.40E-03
70	GO:0015103: inorganic anion transmembrane transporter activity	3.40E-03
71	GO:0003747: translation release factor activity	5.11E-03
72	GO:0005525: GTP binding	5.29E-03
73	GO:0047617: acyl-CoA hydrolase activity	5.74E-03
74	GO:0015020: glucuronosyltransferase activity	6.38E-03
75	GO:0004185: serine-type carboxypeptidase activity	6.93E-03
76	GO:0008559: xenobiotic-transporting ATPase activity	7.06E-03
77	GO:0010329: auxin efflux transmembrane transporter activity	8.48E-03
78	GO:0005315: inorganic phosphate transmembrane transporter activity	8.48E-03
79	GO:0004089: carbonate dehydratase activity	8.48E-03
80	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.23E-03
81	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.14E-02
82	GO:0005528: FK506 binding	1.16E-02
83	GO:0005216: ion channel activity	1.24E-02
84	GO:0003779: actin binding	1.30E-02
85	GO:0022891: substrate-specific transmembrane transporter activity	1.51E-02
86	GO:0003924: GTPase activity	1.60E-02
87	GO:0003727: single-stranded RNA binding	1.60E-02
88	GO:0008514: organic anion transmembrane transporter activity	1.60E-02
89	GO:0019843: rRNA binding	1.67E-02
90	GO:0004812: aminoacyl-tRNA ligase activity	1.70E-02
91	GO:0004519: endonuclease activity	1.78E-02
92	GO:0046873: metal ion transmembrane transporter activity	1.89E-02
93	GO:0050662: coenzyme binding	1.99E-02
94	GO:0010181: FMN binding	1.99E-02
95	GO:0008565: protein transporter activity	2.01E-02
96	GO:0003723: RNA binding	2.14E-02
97	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.63E-02
98	GO:0005200: structural constituent of cytoskeleton	2.63E-02
99	GO:0016597: amino acid binding	2.74E-02
100	GO:0003824: catalytic activity	2.89E-02
101	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.94E-02
102	GO:0016168: chlorophyll binding	2.97E-02
103	GO:0008375: acetylglucosaminyltransferase activity	3.09E-02
104	GO:0102483: scopolin beta-glucosidase activity	3.20E-02
105	GO:0015238: drug transmembrane transporter activity	3.57E-02
106	GO:0004601: peroxidase activity	3.58E-02
107	GO:0016788: hydrolase activity, acting on ester bonds	3.65E-02
108	GO:0004222: metalloendopeptidase activity	3.70E-02
109	GO:0016491: oxidoreductase activity	3.77E-02
110	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.82E-02
111	GO:0050897: cobalt ion binding	3.82E-02
112	GO:0008422: beta-glucosidase activity	4.34E-02
113	GO:0000149: SNARE binding	4.34E-02
114	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.34E-02
115	GO:0005484: SNAP receptor activity	4.88E-02
116	GO:0052689: carboxylic ester hydrolase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	7.92E-18
4	GO:0009570: chloroplast stroma	5.77E-06
5	GO:0033281: TAT protein transport complex	8.46E-06
6	GO:0031361: integral component of thylakoid membrane	2.22E-04
7	GO:0042644: chloroplast nucleoid	2.91E-04
8	GO:0009706: chloroplast inner membrane	3.25E-04
9	GO:0016459: myosin complex	4.05E-04
10	GO:0043036: starch grain	4.95E-04
11	GO:0080085: signal recognition particle, chloroplast targeting	4.95E-04
12	GO:0008290: F-actin capping protein complex	4.95E-04
13	GO:0010007: magnesium chelatase complex	8.05E-04
14	GO:0030658: transport vesicle membrane	1.15E-03
15	GO:0015630: microtubule cytoskeleton	1.15E-03
16	GO:0042646: plastid nucleoid	1.15E-03
17	GO:0009526: plastid envelope	1.53E-03
18	GO:0031969: chloroplast membrane	2.03E-03
19	GO:0009535: chloroplast thylakoid membrane	3.56E-03
20	GO:0012507: ER to Golgi transport vesicle membrane	3.94E-03
21	GO:0009707: chloroplast outer membrane	4.25E-03
22	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.51E-03
23	GO:0005720: nuclear heterochromatin	5.11E-03
24	GO:0048471: perinuclear region of cytoplasm	7.06E-03
25	GO:0009508: plastid chromosome	8.48E-03
26	GO:0005773: vacuole	8.90E-03
27	GO:0042651: thylakoid membrane	1.24E-02
28	GO:0016021: integral component of membrane	1.25E-02
29	GO:0005623: cell	1.72E-02
30	GO:0043231: intracellular membrane-bounded organelle	1.81E-02
31	GO:0009523: photosystem II	2.09E-02
32	GO:0009295: nucleoid	2.63E-02
33	GO:0030529: intracellular ribonucleoprotein complex	2.85E-02
34	GO:0009536: plastid	3.40E-02
35	GO:0000325: plant-type vacuole	3.82E-02
36	GO:0009941: chloroplast envelope	4.27E-02
37	GO:0031902: late endosome membrane	4.61E-02
38	GO:0031977: thylakoid lumen	4.61E-02
39	GO:0031201: SNARE complex	4.61E-02
40	GO:0005789: endoplasmic reticulum membrane	4.67E-02