co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G43020

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
4	GO:0017038: protein import	0.00E+00
5	GO:0070125: mitochondrial translational elongation	0.00E+00
6	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
7	GO:0030155: regulation of cell adhesion	0.00E+00
8	GO:0019323: pentose catabolic process	0.00E+00
9	GO:0090706: specification of plant organ position	0.00E+00
10	GO:0016123: xanthophyll biosynthetic process	4.65E-05
11	GO:0040008: regulation of growth	7.08E-05
12	GO:0009733: response to auxin	1.27E-04
13	GO:0006438: valyl-tRNA aminoacylation	1.98E-04
14	GO:0070509: calcium ion import	1.98E-04
15	GO:0044262: cellular carbohydrate metabolic process	1.98E-04
16	GO:0010063: positive regulation of trichoblast fate specification	1.98E-04
17	GO:1902458: positive regulation of stomatal opening	1.98E-04
18	GO:0048363: mucilage pectin metabolic process	1.98E-04
19	GO:0010450: inflorescence meristem growth	1.98E-04
20	GO:0009734: auxin-activated signaling pathway	2.32E-04
21	GO:0010027: thylakoid membrane organization	2.88E-04
22	GO:0006779: porphyrin-containing compound biosynthetic process	2.92E-04
23	GO:0006782: protoporphyrinogen IX biosynthetic process	3.43E-04
24	GO:0048829: root cap development	3.43E-04
25	GO:0015995: chlorophyll biosynthetic process	3.58E-04
26	GO:0060359: response to ammonium ion	4.43E-04
27	GO:0048255: mRNA stabilization	4.43E-04
28	GO:0018026: peptidyl-lysine monomethylation	4.43E-04
29	GO:0071668: plant-type cell wall assembly	4.43E-04
30	GO:0009786: regulation of asymmetric cell division	4.43E-04
31	GO:0001682: tRNA 5'-leader removal	4.43E-04
32	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.43E-04
33	GO:2000123: positive regulation of stomatal complex development	4.43E-04
34	GO:0010207: photosystem II assembly	5.82E-04
35	GO:0070588: calcium ion transmembrane transport	6.52E-04
36	GO:0006696: ergosterol biosynthetic process	7.22E-04
37	GO:0043157: response to cation stress	7.22E-04
38	GO:0045165: cell fate commitment	7.22E-04
39	GO:0048281: inflorescence morphogenesis	7.22E-04
40	GO:0009944: polarity specification of adaxial/abaxial axis	8.01E-04
41	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.03E-03
42	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.03E-03
43	GO:0031048: chromatin silencing by small RNA	1.03E-03
44	GO:0010148: transpiration	1.03E-03
45	GO:0010088: phloem development	1.03E-03
46	GO:0046739: transport of virus in multicellular host	1.03E-03
47	GO:0010071: root meristem specification	1.03E-03
48	GO:0051513: regulation of monopolar cell growth	1.03E-03
49	GO:0007231: osmosensory signaling pathway	1.03E-03
50	GO:0009102: biotin biosynthetic process	1.03E-03
51	GO:0051639: actin filament network formation	1.03E-03
52	GO:0019048: modulation by virus of host morphology or physiology	1.03E-03
53	GO:0009658: chloroplast organization	1.13E-03
54	GO:0016117: carotenoid biosynthetic process	1.34E-03
55	GO:0051567: histone H3-K9 methylation	1.37E-03
56	GO:0033500: carbohydrate homeostasis	1.37E-03
57	GO:0008295: spermidine biosynthetic process	1.37E-03
58	GO:2000038: regulation of stomatal complex development	1.37E-03
59	GO:0010109: regulation of photosynthesis	1.37E-03
60	GO:0051764: actin crosslink formation	1.37E-03
61	GO:0009765: photosynthesis, light harvesting	1.37E-03
62	GO:0008033: tRNA processing	1.45E-03
63	GO:0010305: leaf vascular tissue pattern formation	1.56E-03
64	GO:0016120: carotene biosynthetic process	1.74E-03
65	GO:0045038: protein import into chloroplast thylakoid membrane	1.74E-03
66	GO:0048497: maintenance of floral organ identity	1.74E-03
67	GO:1902183: regulation of shoot apical meristem development	1.74E-03
68	GO:0010158: abaxial cell fate specification	1.74E-03
69	GO:0010375: stomatal complex patterning	1.74E-03
70	GO:0009913: epidermal cell differentiation	2.14E-03
71	GO:0042793: transcription from plastid promoter	2.14E-03
72	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.14E-03
73	GO:0016458: gene silencing	2.14E-03
74	GO:0010405: arabinogalactan protein metabolic process	2.14E-03
75	GO:0009959: negative gravitropism	2.14E-03
76	GO:0016554: cytidine to uridine editing	2.14E-03
77	GO:0042372: phylloquinone biosynthetic process	2.57E-03
78	GO:0030488: tRNA methylation	2.57E-03
79	GO:0080086: stamen filament development	2.57E-03
80	GO:0051607: defense response to virus	2.61E-03
81	GO:0048437: floral organ development	3.03E-03
82	GO:0070370: cellular heat acclimation	3.03E-03
83	GO:0030307: positive regulation of cell growth	3.03E-03
84	GO:0010103: stomatal complex morphogenesis	3.03E-03
85	GO:0048528: post-embryonic root development	3.03E-03
86	GO:0046620: regulation of organ growth	3.51E-03
87	GO:0006605: protein targeting	3.51E-03
88	GO:2000070: regulation of response to water deprivation	3.51E-03
89	GO:0000105: histidine biosynthetic process	3.51E-03
90	GO:0048564: photosystem I assembly	3.51E-03
91	GO:0007186: G-protein coupled receptor signaling pathway	4.02E-03
92	GO:0001558: regulation of cell growth	4.02E-03
93	GO:0010497: plasmodesmata-mediated intercellular transport	4.02E-03
94	GO:0009657: plastid organization	4.02E-03
95	GO:0006526: arginine biosynthetic process	4.02E-03
96	GO:0010093: specification of floral organ identity	4.02E-03
97	GO:0015996: chlorophyll catabolic process	4.02E-03
98	GO:0007166: cell surface receptor signaling pathway	4.07E-03
99	GO:0006865: amino acid transport	4.34E-03
100	GO:0048507: meristem development	4.54E-03
101	GO:2000024: regulation of leaf development	4.54E-03
102	GO:0000373: Group II intron splicing	4.54E-03
103	GO:0000902: cell morphogenesis	4.54E-03
104	GO:1900865: chloroplast RNA modification	5.10E-03
105	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.10E-03
106	GO:0009098: leucine biosynthetic process	5.10E-03
107	GO:0030001: metal ion transport	5.17E-03
108	GO:0009299: mRNA transcription	5.67E-03
109	GO:0030422: production of siRNA involved in RNA interference	5.67E-03
110	GO:0007275: multicellular organism development	5.90E-03
111	GO:0009073: aromatic amino acid family biosynthetic process	6.27E-03
112	GO:0006415: translational termination	6.27E-03
113	GO:0006816: calcium ion transport	6.27E-03
114	GO:0005983: starch catabolic process	6.89E-03
115	GO:0045037: protein import into chloroplast stroma	6.89E-03
116	GO:0048366: leaf development	7.35E-03
117	GO:2000012: regulation of auxin polar transport	7.52E-03
118	GO:0009691: cytokinin biosynthetic process	7.52E-03
119	GO:0009725: response to hormone	7.52E-03
120	GO:0010588: cotyledon vascular tissue pattern formation	7.52E-03
121	GO:0009793: embryo development ending in seed dormancy	8.10E-03
122	GO:0009933: meristem structural organization	8.19E-03
123	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.20E-03
124	GO:0009909: regulation of flower development	8.73E-03
125	GO:0010030: positive regulation of seed germination	8.87E-03
126	GO:0009969: xyloglucan biosynthetic process	8.87E-03
127	GO:0006833: water transport	9.57E-03
128	GO:0000162: tryptophan biosynthetic process	9.57E-03
129	GO:0051017: actin filament bundle assembly	1.03E-02
130	GO:0006418: tRNA aminoacylation for protein translation	1.10E-02
131	GO:0006825: copper ion transport	1.10E-02
132	GO:0051302: regulation of cell division	1.10E-02
133	GO:0009624: response to nematode	1.12E-02
134	GO:0006396: RNA processing	1.16E-02
135	GO:0006306: DNA methylation	1.18E-02
136	GO:0003333: amino acid transmembrane transport	1.18E-02
137	GO:0048511: rhythmic process	1.18E-02
138	GO:0009742: brassinosteroid mediated signaling pathway	1.19E-02
139	GO:0030245: cellulose catabolic process	1.26E-02
140	GO:0010082: regulation of root meristem growth	1.34E-02
141	GO:0001944: vasculature development	1.34E-02
142	GO:0042127: regulation of cell proliferation	1.42E-02
143	GO:0006468: protein phosphorylation	1.42E-02
144	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.50E-02
145	GO:0000271: polysaccharide biosynthetic process	1.59E-02
146	GO:0034220: ion transmembrane transport	1.59E-02
147	GO:0042631: cellular response to water deprivation	1.59E-02
148	GO:0009790: embryo development	1.65E-02
149	GO:0045489: pectin biosynthetic process	1.67E-02
150	GO:0009958: positive gravitropism	1.67E-02
151	GO:0010154: fruit development	1.67E-02
152	GO:0006520: cellular amino acid metabolic process	1.67E-02
153	GO:0010182: sugar mediated signaling pathway	1.67E-02
154	GO:0006342: chromatin silencing	1.67E-02
155	GO:0048544: recognition of pollen	1.76E-02
156	GO:0007018: microtubule-based movement	1.76E-02
157	GO:0042752: regulation of circadian rhythm	1.76E-02
158	GO:0009646: response to absence of light	1.76E-02
159	GO:0048825: cotyledon development	1.85E-02
160	GO:0016032: viral process	2.04E-02
161	GO:0009630: gravitropism	2.04E-02
162	GO:0010090: trichome morphogenesis	2.13E-02
163	GO:0006470: protein dephosphorylation	2.23E-02
164	GO:0007267: cell-cell signaling	2.33E-02
165	GO:0009816: defense response to bacterium, incompatible interaction	2.63E-02
166	GO:0009416: response to light stimulus	2.66E-02
167	GO:0016311: dephosphorylation	2.94E-02
168	GO:0048481: plant ovule development	3.05E-02
169	GO:0018298: protein-chromophore linkage	3.05E-02
170	GO:0010311: lateral root formation	3.16E-02
171	GO:0009832: plant-type cell wall biogenesis	3.16E-02
172	GO:0009910: negative regulation of flower development	3.38E-02
173	GO:0016051: carbohydrate biosynthetic process	3.61E-02
174	GO:0009640: photomorphogenesis	4.32E-02
175	GO:0009926: auxin polar transport	4.32E-02
176	GO:0045892: negative regulation of transcription, DNA-templated	4.53E-02
177	GO:0006886: intracellular protein transport	4.60E-02
178	GO:0009965: leaf morphogenesis	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0046905: phytoene synthase activity	0.00E+00
3	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
4	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
5	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
6	GO:0004076: biotin synthase activity	0.00E+00
7	GO:0001872: (1->3)-beta-D-glucan binding	1.57E-05
8	GO:0019199: transmembrane receptor protein kinase activity	2.88E-05
9	GO:0001085: RNA polymerase II transcription factor binding	1.28E-04
10	GO:0050308: sugar-phosphatase activity	1.98E-04
11	GO:0052381: tRNA dimethylallyltransferase activity	1.98E-04
12	GO:0051996: squalene synthase activity	1.98E-04
13	GO:0019203: carbohydrate phosphatase activity	1.98E-04
14	GO:0005080: protein kinase C binding	1.98E-04
15	GO:0004832: valine-tRNA ligase activity	1.98E-04
16	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.98E-04
17	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	1.98E-04
18	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.98E-04
19	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.98E-04
20	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.43E-04
21	GO:0003852: 2-isopropylmalate synthase activity	4.43E-04
22	GO:0043425: bHLH transcription factor binding	4.43E-04
23	GO:0004766: spermidine synthase activity	4.43E-04
24	GO:0004750: ribulose-phosphate 3-epimerase activity	4.43E-04
25	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.93E-04
26	GO:0005262: calcium channel activity	5.18E-04
27	GO:0003913: DNA photolyase activity	7.22E-04
28	GO:0016805: dipeptidase activity	7.22E-04
29	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.22E-04
30	GO:0015462: ATPase-coupled protein transmembrane transporter activity	7.22E-04
31	GO:0004180: carboxypeptidase activity	7.22E-04
32	GO:0035197: siRNA binding	1.03E-03
33	GO:0016851: magnesium chelatase activity	1.03E-03
34	GO:0016149: translation release factor activity, codon specific	1.03E-03
35	GO:0003682: chromatin binding	1.23E-03
36	GO:0042277: peptide binding	1.37E-03
37	GO:0016279: protein-lysine N-methyltransferase activity	1.37E-03
38	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.37E-03
39	GO:0016208: AMP binding	2.14E-03
40	GO:2001070: starch binding	2.14E-03
41	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.14E-03
42	GO:0004526: ribonuclease P activity	2.14E-03
43	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.69E-03
44	GO:0009881: photoreceptor activity	3.03E-03
45	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	3.03E-03
46	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.14E-03
47	GO:0030247: polysaccharide binding	3.24E-03
48	GO:0008173: RNA methyltransferase activity	4.02E-03
49	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.54E-03
50	GO:0003747: translation release factor activity	4.54E-03
51	GO:0008417: fucosyltransferase activity	4.54E-03
52	GO:0005524: ATP binding	5.93E-03
53	GO:0004521: endoribonuclease activity	6.89E-03
54	GO:0015171: amino acid transmembrane transporter activity	8.73E-03
55	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.03E-02
56	GO:0005528: FK506 binding	1.03E-02
57	GO:0042803: protein homodimerization activity	1.05E-02
58	GO:0004176: ATP-dependent peptidase activity	1.18E-02
59	GO:0003964: RNA-directed DNA polymerase activity	1.18E-02
60	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.26E-02
61	GO:0008810: cellulase activity	1.34E-02
62	GO:0016758: transferase activity, transferring hexosyl groups	1.37E-02
63	GO:0003727: single-stranded RNA binding	1.42E-02
64	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.45E-02
65	GO:0004812: aminoacyl-tRNA ligase activity	1.50E-02
66	GO:0019901: protein kinase binding	1.85E-02
67	GO:0051015: actin filament binding	2.13E-02
68	GO:0008483: transaminase activity	2.33E-02
69	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.33E-02
70	GO:0008237: metallopeptidase activity	2.33E-02
71	GO:0005200: structural constituent of cytoskeleton	2.33E-02
72	GO:0015250: water channel activity	2.53E-02
73	GO:0004721: phosphoprotein phosphatase activity	2.84E-02
74	GO:0004222: metalloendopeptidase activity	3.27E-02
75	GO:0004674: protein serine/threonine kinase activity	3.40E-02
76	GO:0003746: translation elongation factor activity	3.61E-02
77	GO:0003697: single-stranded DNA binding	3.61E-02
78	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.61E-02
79	GO:0003993: acid phosphatase activity	3.73E-02
80	GO:0051539: 4 iron, 4 sulfur cluster binding	3.96E-02
81	GO:0005507: copper ion binding	4.12E-02
82	GO:0004185: serine-type carboxypeptidase activity	4.32E-02
83	GO:0051537: 2 iron, 2 sulfur cluster binding	4.57E-02
84	GO:0043621: protein self-association	4.57E-02
85	GO:0015293: symporter activity	4.70E-02
86	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.82E-02
87	GO:0051287: NAD binding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.77E-07
2	GO:0009570: chloroplast stroma	2.07E-06
3	GO:0009941: chloroplast envelope	1.74E-04
4	GO:0005667: transcription factor complex	3.33E-04
5	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.43E-04
6	GO:0005886: plasma membrane	4.51E-04
7	GO:0009508: plastid chromosome	5.18E-04
8	GO:0019897: extrinsic component of plasma membrane	7.22E-04
9	GO:0010007: magnesium chelatase complex	7.22E-04
10	GO:0030139: endocytic vesicle	7.22E-04
11	GO:0009528: plastid inner membrane	7.22E-04
12	GO:0032432: actin filament bundle	1.03E-03
13	GO:0005719: nuclear euchromatin	1.03E-03
14	GO:0032585: multivesicular body membrane	1.03E-03
15	GO:0030663: COPI-coated vesicle membrane	1.37E-03
16	GO:0009527: plastid outer membrane	1.37E-03
17	GO:0031969: chloroplast membrane	1.56E-03
18	GO:0009295: nucleoid	2.46E-03
19	GO:0010319: stromule	2.46E-03
20	GO:0009986: cell surface	3.03E-03
21	GO:0046658: anchored component of plasma membrane	4.90E-03
22	GO:0015030: Cajal body	5.10E-03
23	GO:0030125: clathrin vesicle coat	5.67E-03
24	GO:0000418: DNA-directed RNA polymerase IV complex	5.67E-03
25	GO:0005884: actin filament	6.27E-03
26	GO:0005578: proteinaceous extracellular matrix	7.52E-03
27	GO:0009534: chloroplast thylakoid	8.99E-03
28	GO:0009532: plastid stroma	1.18E-02
29	GO:0031225: anchored component of membrane	1.32E-02
30	GO:0015629: actin cytoskeleton	1.34E-02
31	GO:0005871: kinesin complex	1.50E-02
32	GO:0031965: nuclear membrane	1.85E-02
33	GO:0032580: Golgi cisterna membrane	2.23E-02
34	GO:0005778: peroxisomal membrane	2.33E-02
35	GO:0030529: intracellular ribonucleoprotein complex	2.53E-02
36	GO:0009707: chloroplast outer membrane	3.05E-02
37	GO:0005874: microtubule	3.61E-02