co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G42825

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:2000469: negative regulation of peroxidase activity	0.00E+00
3	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
6	GO:1905177: tracheary element differentiation	0.00E+00
7	GO:0010158: abaxial cell fate specification	3.65E-07
8	GO:1902183: regulation of shoot apical meristem development	5.00E-05
9	GO:0046620: regulation of organ growth	1.73E-04
10	GO:2000905: negative regulation of starch metabolic process	2.06E-04
11	GO:0010450: inflorescence meristem growth	2.06E-04
12	GO:0034757: negative regulation of iron ion transport	2.06E-04
13	GO:0010080: regulation of floral meristem growth	2.06E-04
14	GO:0051247: positive regulation of protein metabolic process	2.06E-04
15	GO:0000066: mitochondrial ornithine transport	2.06E-04
16	GO:2000024: regulation of leaf development	2.61E-04
17	GO:0000373: Group II intron splicing	2.61E-04
18	GO:0010024: phytochromobilin biosynthetic process	4.62E-04
19	GO:0010271: regulation of chlorophyll catabolic process	4.62E-04
20	GO:0010582: floral meristem determinacy	4.85E-04
21	GO:0010022: meristem determinacy	7.52E-04
22	GO:0080117: secondary growth	7.52E-04
23	GO:0048586: regulation of long-day photoperiodism, flowering	7.52E-04
24	GO:0010623: programmed cell death involved in cell development	7.52E-04
25	GO:0071398: cellular response to fatty acid	7.52E-04
26	GO:0045165: cell fate commitment	7.52E-04
27	GO:0009944: polarity specification of adaxial/abaxial axis	8.52E-04
28	GO:0051513: regulation of monopolar cell growth	1.07E-03
29	GO:0051639: actin filament network formation	1.07E-03
30	GO:0034059: response to anoxia	1.07E-03
31	GO:0010239: chloroplast mRNA processing	1.07E-03
32	GO:0042989: sequestering of actin monomers	1.07E-03
33	GO:1990019: protein storage vacuole organization	1.07E-03
34	GO:0046836: glycolipid transport	1.07E-03
35	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.21E-03
36	GO:0051764: actin crosslink formation	1.43E-03
37	GO:2000306: positive regulation of photomorphogenesis	1.43E-03
38	GO:0010508: positive regulation of autophagy	1.43E-03
39	GO:0010154: fruit development	1.66E-03
40	GO:0080110: sporopollenin biosynthetic process	1.81E-03
41	GO:0030041: actin filament polymerization	1.81E-03
42	GO:0010236: plastoquinone biosynthetic process	1.81E-03
43	GO:0006555: methionine metabolic process	2.24E-03
44	GO:0048831: regulation of shoot system development	2.24E-03
45	GO:0009828: plant-type cell wall loosening	2.46E-03
46	GO:1901259: chloroplast rRNA processing	2.69E-03
47	GO:0048509: regulation of meristem development	2.69E-03
48	GO:0010019: chloroplast-nucleus signaling pathway	2.69E-03
49	GO:0010029: regulation of seed germination	3.10E-03
50	GO:0006955: immune response	3.16E-03
51	GO:0010050: vegetative phase change	3.16E-03
52	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	3.16E-03
53	GO:0051510: regulation of unidimensional cell growth	3.16E-03
54	GO:0030307: positive regulation of cell growth	3.16E-03
55	GO:0048564: photosystem I assembly	3.67E-03
56	GO:0006353: DNA-templated transcription, termination	3.67E-03
57	GO:0009850: auxin metabolic process	3.67E-03
58	GO:0000160: phosphorelay signal transduction system	4.01E-03
59	GO:0009657: plastid organization	4.20E-03
60	GO:0010093: specification of floral organ identity	4.20E-03
61	GO:0048527: lateral root development	4.42E-03
62	GO:0006098: pentose-phosphate shunt	4.75E-03
63	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.75E-03
64	GO:0010206: photosystem II repair	4.75E-03
65	GO:0035999: tetrahydrofolate interconversion	5.32E-03
66	GO:0010018: far-red light signaling pathway	5.32E-03
67	GO:0009086: methionine biosynthetic process	5.32E-03
68	GO:0006839: mitochondrial transport	5.51E-03
69	GO:0006949: syncytium formation	5.93E-03
70	GO:0009299: mRNA transcription	5.93E-03
71	GO:0006535: cysteine biosynthetic process from serine	5.93E-03
72	GO:0009826: unidimensional cell growth	6.17E-03
73	GO:0009926: auxin polar transport	6.23E-03
74	GO:0006415: translational termination	6.55E-03
75	GO:0045037: protein import into chloroplast stroma	7.20E-03
76	GO:0009664: plant-type cell wall organization	7.82E-03
77	GO:0009725: response to hormone	7.87E-03
78	GO:0006094: gluconeogenesis	7.87E-03
79	GO:0050826: response to freezing	7.87E-03
80	GO:0009736: cytokinin-activated signaling pathway	8.40E-03
81	GO:0009933: meristem structural organization	8.56E-03
82	GO:0010207: photosystem II assembly	8.56E-03
83	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.89E-03
84	GO:0090351: seedling development	9.27E-03
85	GO:0009909: regulation of flower development	9.31E-03
86	GO:0042753: positive regulation of circadian rhythm	1.00E-02
87	GO:0048316: seed development	1.03E-02
88	GO:0019344: cysteine biosynthetic process	1.08E-02
89	GO:0007010: cytoskeleton organization	1.08E-02
90	GO:0051017: actin filament bundle assembly	1.08E-02
91	GO:0009740: gibberellic acid mediated signaling pathway	1.13E-02
92	GO:0010431: seed maturation	1.23E-02
93	GO:0016998: cell wall macromolecule catabolic process	1.23E-02
94	GO:0035428: hexose transmembrane transport	1.32E-02
95	GO:0006730: one-carbon metabolic process	1.32E-02
96	GO:0009693: ethylene biosynthetic process	1.40E-02
97	GO:0071215: cellular response to abscisic acid stimulus	1.40E-02
98	GO:0010089: xylem development	1.48E-02
99	GO:0010584: pollen exine formation	1.48E-02
100	GO:0006284: base-excision repair	1.48E-02
101	GO:0019722: calcium-mediated signaling	1.48E-02
102	GO:0016117: carotenoid biosynthetic process	1.57E-02
103	GO:0070417: cellular response to cold	1.57E-02
104	GO:0009845: seed germination	1.63E-02
105	GO:0034220: ion transmembrane transport	1.66E-02
106	GO:0010087: phloem or xylem histogenesis	1.66E-02
107	GO:0046323: glucose import	1.75E-02
108	GO:0009646: response to absence of light	1.84E-02
109	GO:0048544: recognition of pollen	1.84E-02
110	GO:0000302: response to reactive oxygen species	2.03E-02
111	GO:0009734: auxin-activated signaling pathway	2.16E-02
112	GO:0010252: auxin homeostasis	2.33E-02
113	GO:0009639: response to red or far red light	2.33E-02
114	GO:0006914: autophagy	2.33E-02
115	GO:0007267: cell-cell signaling	2.43E-02
116	GO:0009733: response to auxin	2.55E-02
117	GO:0009911: positive regulation of flower development	2.64E-02
118	GO:0001666: response to hypoxia	2.64E-02
119	GO:0010411: xyloglucan metabolic process	2.97E-02
120	GO:0018298: protein-chromophore linkage	3.19E-02
121	GO:0007568: aging	3.54E-02
122	GO:0034599: cellular response to oxidative stress	3.90E-02
123	GO:0006631: fatty acid metabolic process	4.27E-02
124	GO:0042546: cell wall biogenesis	4.65E-02
125	GO:0045892: negative regulation of transcription, DNA-templated	4.83E-02
126	GO:0009636: response to toxic substance	4.91E-02
127	GO:0009965: leaf morphogenesis	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
2	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
3	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
4	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
5	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
6	GO:0005227: calcium activated cation channel activity	2.06E-04
7	GO:0042834: peptidoglycan binding	2.06E-04
8	GO:0005290: L-histidine transmembrane transporter activity	2.06E-04
9	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	2.06E-04
10	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.06E-04
11	GO:0043425: bHLH transcription factor binding	4.62E-04
12	GO:0000064: L-ornithine transmembrane transporter activity	4.62E-04
13	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	4.62E-04
14	GO:0009884: cytokinin receptor activity	4.62E-04
15	GO:0050017: L-3-cyanoalanine synthase activity	4.62E-04
16	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	7.52E-04
17	GO:0003913: DNA photolyase activity	7.52E-04
18	GO:0004557: alpha-galactosidase activity	7.52E-04
19	GO:0005034: osmosensor activity	7.52E-04
20	GO:0052692: raffinose alpha-galactosidase activity	7.52E-04
21	GO:0015189: L-lysine transmembrane transporter activity	1.07E-03
22	GO:0017089: glycolipid transporter activity	1.07E-03
23	GO:0015181: arginine transmembrane transporter activity	1.07E-03
24	GO:0016149: translation release factor activity, codon specific	1.07E-03
25	GO:0051861: glycolipid binding	1.43E-03
26	GO:0008725: DNA-3-methyladenine glycosylase activity	1.81E-03
27	GO:0003785: actin monomer binding	1.81E-03
28	GO:0005471: ATP:ADP antiporter activity	1.81E-03
29	GO:0004518: nuclease activity	2.18E-03
30	GO:0004332: fructose-bisphosphate aldolase activity	2.24E-03
31	GO:0004130: cytochrome-c peroxidase activity	2.24E-03
32	GO:0004462: lactoylglutathione lyase activity	2.24E-03
33	GO:0016688: L-ascorbate peroxidase activity	2.24E-03
34	GO:0004124: cysteine synthase activity	2.69E-03
35	GO:0004017: adenylate kinase activity	2.69E-03
36	GO:0019900: kinase binding	2.69E-03
37	GO:0009881: photoreceptor activity	3.16E-03
38	GO:0043022: ribosome binding	3.67E-03
39	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.75E-03
40	GO:0003747: translation release factor activity	4.75E-03
41	GO:0004673: protein histidine kinase activity	5.93E-03
42	GO:0004161: dimethylallyltranstransferase activity	6.55E-03
43	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.55E-03
44	GO:0000976: transcription regulatory region sequence-specific DNA binding	7.20E-03
45	GO:0008081: phosphoric diester hydrolase activity	7.87E-03
46	GO:0000155: phosphorelay sensor kinase activity	7.87E-03
47	GO:0031418: L-ascorbic acid binding	1.08E-02
48	GO:0005528: FK506 binding	1.08E-02
49	GO:0043424: protein histidine kinase binding	1.15E-02
50	GO:0010181: FMN binding	1.84E-02
51	GO:0005355: glucose transmembrane transporter activity	1.84E-02
52	GO:0050662: coenzyme binding	1.84E-02
53	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.94E-02
54	GO:0019901: protein kinase binding	1.94E-02
55	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.03E-02
56	GO:0000156: phosphorelay response regulator activity	2.23E-02
57	GO:0051015: actin filament binding	2.23E-02
58	GO:0042802: identical protein binding	2.64E-02
59	GO:0015250: water channel activity	2.64E-02
60	GO:0004721: phosphoprotein phosphatase activity	2.97E-02
61	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.97E-02
62	GO:0008236: serine-type peptidase activity	3.08E-02
63	GO:0005096: GTPase activator activity	3.31E-02
64	GO:0050897: cobalt ion binding	3.54E-02
65	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.06E-02
66	GO:0043621: protein self-association	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.58E-07
2	GO:0032432: actin filament bundle	1.07E-03
3	GO:0009579: thylakoid	2.50E-03
4	GO:0009535: chloroplast thylakoid membrane	2.81E-03
5	GO:0042807: central vacuole	3.16E-03
6	GO:0000326: protein storage vacuole	4.20E-03
7	GO:0009570: chloroplast stroma	4.42E-03
8	GO:0031977: thylakoid lumen	5.75E-03
9	GO:0005884: actin filament	6.55E-03
10	GO:0000311: plastid large ribosomal subunit	7.20E-03
11	GO:0005578: proteinaceous extracellular matrix	7.87E-03
12	GO:0005938: cell cortex	7.87E-03
13	GO:0015629: actin cytoskeleton	1.40E-02
14	GO:0010287: plastoglobule	1.42E-02
15	GO:0009543: chloroplast thylakoid lumen	1.50E-02
16	GO:0030529: intracellular ribonucleoprotein complex	2.64E-02
17	GO:0009505: plant-type cell wall	3.00E-02
18	GO:0000151: ubiquitin ligase complex	3.19E-02
19	GO:0015934: large ribosomal subunit	3.54E-02
20	GO:0031969: chloroplast membrane	3.98E-02