co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G42190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0098586: cellular response to virus	0.00E+00
2	GO:0007037: vacuolar phosphate transport	0.00E+00
3	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
4	GO:0006114: glycerol biosynthetic process	0.00E+00
5	GO:0090351: seedling development	6.43E-06
6	GO:0045010: actin nucleation	5.57E-05
7	GO:0000066: mitochondrial ornithine transport	9.88E-05
8	GO:1902458: positive regulation of stomatal opening	9.88E-05
9	GO:0015969: guanosine tetraphosphate metabolic process	9.88E-05
10	GO:0042547: cell wall modification involved in multidimensional cell growth	9.88E-05
11	GO:0015798: myo-inositol transport	9.88E-05
12	GO:0043087: regulation of GTPase activity	9.88E-05
13	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.32E-04
14	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.32E-04
15	GO:0046741: transport of virus in host, tissue to tissue	2.32E-04
16	GO:0006435: threonyl-tRNA aminoacylation	2.32E-04
17	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	2.32E-04
18	GO:0000256: allantoin catabolic process	2.32E-04
19	GO:0010136: ureide catabolic process	3.86E-04
20	GO:0006730: one-carbon metabolic process	4.20E-04
21	GO:0006145: purine nucleobase catabolic process	5.54E-04
22	GO:0042989: sequestering of actin monomers	5.54E-04
23	GO:0043572: plastid fission	5.54E-04
24	GO:0051781: positive regulation of cell division	7.37E-04
25	GO:0051322: anaphase	7.37E-04
26	GO:0071483: cellular response to blue light	7.37E-04
27	GO:0010090: trichome morphogenesis	8.66E-04
28	GO:1902183: regulation of shoot apical meristem development	9.32E-04
29	GO:0010158: abaxial cell fate specification	9.32E-04
30	GO:0030041: actin filament polymerization	9.32E-04
31	GO:0045038: protein import into chloroplast thylakoid membrane	9.32E-04
32	GO:0006555: methionine metabolic process	1.14E-03
33	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.14E-03
34	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.14E-03
35	GO:0009793: embryo development ending in seed dormancy	1.19E-03
36	GO:0042372: phylloquinone biosynthetic process	1.36E-03
37	GO:0009612: response to mechanical stimulus	1.36E-03
38	GO:0009395: phospholipid catabolic process	1.59E-03
39	GO:0009645: response to low light intensity stimulus	1.59E-03
40	GO:0051510: regulation of unidimensional cell growth	1.59E-03
41	GO:0009658: chloroplast organization	1.77E-03
42	GO:0048564: photosystem I assembly	1.84E-03
43	GO:0042255: ribosome assembly	1.84E-03
44	GO:0006353: DNA-templated transcription, termination	1.84E-03
45	GO:2000070: regulation of response to water deprivation	1.84E-03
46	GO:0010492: maintenance of shoot apical meristem identity	1.84E-03
47	GO:0071482: cellular response to light stimulus	2.10E-03
48	GO:0022900: electron transport chain	2.10E-03
49	GO:0048507: meristem development	2.37E-03
50	GO:0009821: alkaloid biosynthetic process	2.37E-03
51	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.37E-03
52	GO:0010206: photosystem II repair	2.37E-03
53	GO:2000024: regulation of leaf development	2.37E-03
54	GO:0000373: Group II intron splicing	2.37E-03
55	GO:0035999: tetrahydrofolate interconversion	2.65E-03
56	GO:0009086: methionine biosynthetic process	2.65E-03
57	GO:0006259: DNA metabolic process	2.95E-03
58	GO:0006265: DNA topological change	3.25E-03
59	GO:0006352: DNA-templated transcription, initiation	3.25E-03
60	GO:0045037: protein import into chloroplast stroma	3.57E-03
61	GO:0006096: glycolytic process	3.59E-03
62	GO:0006629: lipid metabolic process	3.80E-03
63	GO:0030036: actin cytoskeleton organization	3.89E-03
64	GO:0006094: gluconeogenesis	3.89E-03
65	GO:0010020: chloroplast fission	4.22E-03
66	GO:0007010: cytoskeleton organization	5.28E-03
67	GO:0009944: polarity specification of adaxial/abaxial axis	5.28E-03
68	GO:0051302: regulation of cell division	5.65E-03
69	GO:0010431: seed maturation	6.03E-03
70	GO:0009814: defense response, incompatible interaction	6.42E-03
71	GO:0031348: negative regulation of defense response	6.42E-03
72	GO:0019722: calcium-mediated signaling	7.23E-03
73	GO:0009306: protein secretion	7.23E-03
74	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	7.64E-03
75	GO:0008033: tRNA processing	8.07E-03
76	GO:0007166: cell surface receptor signaling pathway	8.49E-03
77	GO:0010154: fruit development	8.50E-03
78	GO:0010197: polar nucleus fusion	8.50E-03
79	GO:0048868: pollen tube development	8.50E-03
80	GO:0007059: chromosome segregation	8.94E-03
81	GO:0007018: microtubule-based movement	8.94E-03
82	GO:0000302: response to reactive oxygen species	9.85E-03
83	GO:0032502: developmental process	1.03E-02
84	GO:0010583: response to cyclopentenone	1.03E-02
85	GO:0007267: cell-cell signaling	1.18E-02
86	GO:0000910: cytokinesis	1.23E-02
87	GO:0016126: sterol biosynthetic process	1.28E-02
88	GO:0010411: xyloglucan metabolic process	1.43E-02
89	GO:0016311: dephosphorylation	1.49E-02
90	GO:0009817: defense response to fungus, incompatible interaction	1.54E-02
91	GO:0048527: lateral root development	1.71E-02
92	GO:0009853: photorespiration	1.82E-02
93	GO:0045087: innate immune response	1.82E-02
94	GO:0006839: mitochondrial transport	2.00E-02
95	GO:0042546: cell wall biogenesis	2.24E-02
96	GO:0006364: rRNA processing	2.70E-02
97	GO:0051603: proteolysis involved in cellular protein catabolic process	2.77E-02
98	GO:0048316: seed development	3.11E-02
99	GO:0046686: response to cadmium ion	3.35E-02
100	GO:0009058: biosynthetic process	4.22E-02
101	GO:0009845: seed germination	4.30E-02
102	GO:0009790: embryo development	4.54E-02
103	GO:0055085: transmembrane transport	4.74E-02
104	GO:0006413: translational initiation	4.86E-02
105	GO:0016036: cellular response to phosphate starvation	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
4	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
5	GO:0050613: delta14-sterol reductase activity	0.00E+00
6	GO:0043022: ribosome binding	5.57E-05
7	GO:0005290: L-histidine transmembrane transporter activity	9.88E-05
8	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	9.88E-05
9	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	9.88E-05
10	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	9.88E-05
11	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	2.32E-04
12	GO:0009977: proton motive force dependent protein transmembrane transporter activity	2.32E-04
13	GO:0000064: L-ornithine transmembrane transporter activity	2.32E-04
14	GO:0004829: threonine-tRNA ligase activity	2.32E-04
15	GO:0004802: transketolase activity	2.32E-04
16	GO:0008728: GTP diphosphokinase activity	2.32E-04
17	GO:0005366: myo-inositol:proton symporter activity	2.32E-04
18	GO:0008430: selenium binding	3.86E-04
19	GO:0004180: carboxypeptidase activity	3.86E-04
20	GO:0015189: L-lysine transmembrane transporter activity	5.54E-04
21	GO:0015181: arginine transmembrane transporter activity	5.54E-04
22	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	5.54E-04
23	GO:0001053: plastid sigma factor activity	7.37E-04
24	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	7.37E-04
25	GO:0016987: sigma factor activity	7.37E-04
26	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	7.37E-04
27	GO:0008374: O-acyltransferase activity	9.32E-04
28	GO:0003785: actin monomer binding	9.32E-04
29	GO:0008236: serine-type peptidase activity	1.33E-03
30	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.10E-03
31	GO:0016844: strictosidine synthase activity	2.65E-03
32	GO:0004743: pyruvate kinase activity	2.65E-03
33	GO:0030955: potassium ion binding	2.65E-03
34	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.25E-03
35	GO:0008081: phosphoric diester hydrolase activity	3.89E-03
36	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.22E-03
37	GO:0016829: lyase activity	5.83E-03
38	GO:0030570: pectate lyase activity	6.82E-03
39	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	6.92E-03
40	GO:0003727: single-stranded RNA binding	7.23E-03
41	GO:0008017: microtubule binding	7.77E-03
42	GO:0019901: protein kinase binding	9.39E-03
43	GO:0016762: xyloglucan:xyloglucosyl transferase activity	9.85E-03
44	GO:0004518: nuclease activity	1.03E-02
45	GO:0016788: hydrolase activity, acting on ester bonds	1.17E-02
46	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.43E-02
47	GO:0005525: GTP binding	1.48E-02
48	GO:0005096: GTPase activator activity	1.60E-02
49	GO:0003993: acid phosphatase activity	1.88E-02
50	GO:0004185: serine-type carboxypeptidase activity	2.18E-02
51	GO:0051537: 2 iron, 2 sulfur cluster binding	2.31E-02
52	GO:0035091: phosphatidylinositol binding	2.31E-02
53	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.70E-02
54	GO:0003690: double-stranded DNA binding	2.77E-02
55	GO:0003777: microtubule motor activity	2.90E-02
56	GO:0016874: ligase activity	3.32E-02
57	GO:0003779: actin binding	3.39E-02
58	GO:0016746: transferase activity, transferring acyl groups	3.54E-02
59	GO:0019843: rRNA binding	4.07E-02
60	GO:0004252: serine-type endopeptidase activity	4.38E-02
61	GO:0015144: carbohydrate transmembrane transporter activity	4.62E-02
62	GO:0008565: protein transporter activity	4.62E-02
63	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.92E-02
64	GO:0016787: hydrolase activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.43E-12
2	GO:0031209: SCAR complex	2.21E-05
3	GO:0009574: preprophase band	1.98E-04
4	GO:0033281: TAT protein transport complex	3.86E-04
5	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	7.37E-04
6	GO:0046658: anchored component of plasma membrane	1.45E-03
7	GO:0005773: vacuole	1.90E-03
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.37E-03
9	GO:0005938: cell cortex	3.89E-03
10	GO:0030176: integral component of endoplasmic reticulum membrane	4.57E-03
11	GO:0042651: thylakoid membrane	5.65E-03
12	GO:0015629: actin cytoskeleton	6.82E-03
13	GO:0009705: plant-type vacuole membrane	7.43E-03
14	GO:0005871: kinesin complex	7.64E-03
15	GO:0009570: chloroplast stroma	9.23E-03
16	GO:0009295: nucleoid	1.18E-02
17	GO:0030529: intracellular ribonucleoprotein complex	1.28E-02
18	GO:0005874: microtubule	1.38E-02
19	GO:0031225: anchored component of membrane	1.38E-02
20	GO:0009707: chloroplast outer membrane	1.54E-02
21	GO:0031977: thylakoid lumen	2.06E-02
22	GO:0005856: cytoskeleton	2.37E-02
23	GO:0009536: plastid	2.49E-02
24	GO:0009706: chloroplast inner membrane	3.47E-02
25	GO:0009543: chloroplast thylakoid lumen	4.07E-02
26	GO:0005623: cell	4.15E-02
27	GO:0009524: phragmoplast	4.22E-02
28	GO:0009579: thylakoid	4.47E-02
29	GO:0005759: mitochondrial matrix	4.78E-02