co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G42020

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0052386: cell wall thickening	0.00E+00
2	GO:0006983: ER overload response	0.00E+00
3	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
4	GO:0090480: purine nucleotide-sugar transmembrane transport	0.00E+00
5	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
6	GO:0009863: salicylic acid mediated signaling pathway	8.96E-06
7	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	9.69E-05
8	GO:1903648: positive regulation of chlorophyll catabolic process	9.69E-05
9	GO:1990641: response to iron ion starvation	9.69E-05
10	GO:0009812: flavonoid metabolic process	2.28E-04
11	GO:0052542: defense response by callose deposition	2.28E-04
12	GO:0006101: citrate metabolic process	2.28E-04
13	GO:0043066: negative regulation of apoptotic process	2.28E-04
14	GO:0080183: response to photooxidative stress	2.28E-04
15	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	2.28E-04
16	GO:0030150: protein import into mitochondrial matrix	3.08E-04
17	GO:1901562: response to paraquat	3.80E-04
18	GO:0015783: GDP-fucose transport	3.80E-04
19	GO:0032504: multicellular organism reproduction	3.80E-04
20	GO:0009410: response to xenobiotic stimulus	3.80E-04
21	GO:0009306: protein secretion	4.86E-04
22	GO:0071323: cellular response to chitin	5.46E-04
23	GO:0055070: copper ion homeostasis	5.46E-04
24	GO:0000003: reproduction	7.26E-04
25	GO:0006097: glyoxylate cycle	9.17E-04
26	GO:0010150: leaf senescence	9.96E-04
27	GO:0045040: protein import into mitochondrial outer membrane	1.12E-03
28	GO:0015031: protein transport	1.50E-03
29	GO:1900057: positive regulation of leaf senescence	1.57E-03
30	GO:0006333: chromatin assembly or disassembly	1.57E-03
31	GO:0010044: response to aluminum ion	1.57E-03
32	GO:1900150: regulation of defense response to fungus	1.81E-03
33	GO:0006102: isocitrate metabolic process	1.81E-03
34	GO:0007155: cell adhesion	1.81E-03
35	GO:0010417: glucuronoxylan biosynthetic process	2.07E-03
36	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	2.07E-03
37	GO:0015780: nucleotide-sugar transport	2.33E-03
38	GO:0007338: single fertilization	2.33E-03
39	GO:0009086: methionine biosynthetic process	2.61E-03
40	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.61E-03
41	GO:0008202: steroid metabolic process	2.61E-03
42	GO:0006896: Golgi to vacuole transport	2.90E-03
43	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.90E-03
44	GO:0043069: negative regulation of programmed cell death	2.90E-03
45	GO:0006913: nucleocytoplasmic transport	3.20E-03
46	GO:0052544: defense response by callose deposition in cell wall	3.20E-03
47	GO:0009089: lysine biosynthetic process via diaminopimelate	3.20E-03
48	GO:0000038: very long-chain fatty acid metabolic process	3.20E-03
49	GO:0007275: multicellular organism development	3.22E-03
50	GO:0045037: protein import into chloroplast stroma	3.50E-03
51	GO:0000266: mitochondrial fission	3.50E-03
52	GO:0006626: protein targeting to mitochondrion	3.82E-03
53	GO:0007034: vacuolar transport	4.15E-03
54	GO:0007030: Golgi organization	4.49E-03
55	GO:0009901: anther dehiscence	4.49E-03
56	GO:0070588: calcium ion transmembrane transport	4.49E-03
57	GO:0006289: nucleotide-excision repair	5.19E-03
58	GO:0048278: vesicle docking	5.93E-03
59	GO:0006334: nucleosome assembly	5.93E-03
60	GO:0009814: defense response, incompatible interaction	6.31E-03
61	GO:0030433: ubiquitin-dependent ERAD pathway	6.31E-03
62	GO:0071456: cellular response to hypoxia	6.31E-03
63	GO:0009738: abscisic acid-activated signaling pathway	7.30E-03
64	GO:0010051: xylem and phloem pattern formation	7.93E-03
65	GO:0006470: protein dephosphorylation	8.28E-03
66	GO:0045489: pectin biosynthetic process	8.35E-03
67	GO:0008360: regulation of cell shape	8.35E-03
68	GO:0010197: polar nucleus fusion	8.35E-03
69	GO:0061025: membrane fusion	8.79E-03
70	GO:0006623: protein targeting to vacuole	9.23E-03
71	GO:0071554: cell wall organization or biogenesis	9.68E-03
72	GO:0006464: cellular protein modification process	1.11E-02
73	GO:0009567: double fertilization forming a zygote and endosperm	1.11E-02
74	GO:0010029: regulation of seed germination	1.30E-02
75	GO:0009816: defense response to bacterium, incompatible interaction	1.30E-02
76	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.30E-02
77	GO:0006351: transcription, DNA-templated	1.33E-02
78	GO:0006906: vesicle fusion	1.36E-02
79	GO:0000724: double-strand break repair via homologous recombination	1.73E-02
80	GO:0045087: innate immune response	1.79E-02
81	GO:0016051: carbohydrate biosynthetic process	1.79E-02
82	GO:0006099: tricarboxylic acid cycle	1.85E-02
83	GO:0042742: defense response to bacterium	1.86E-02
84	GO:0006839: mitochondrial transport	1.96E-02
85	GO:0006631: fatty acid metabolic process	2.02E-02
86	GO:0006897: endocytosis	2.02E-02
87	GO:0009408: response to heat	2.06E-02
88	GO:0010114: response to red light	2.14E-02
89	GO:0051707: response to other organism	2.14E-02
90	GO:0000209: protein polyubiquitination	2.20E-02
91	GO:0008643: carbohydrate transport	2.27E-02
92	GO:0009965: leaf morphogenesis	2.33E-02
93	GO:0006508: proteolysis	2.37E-02
94	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.46E-02
95	GO:0006812: cation transport	2.52E-02
96	GO:0042538: hyperosmotic salinity response	2.52E-02
97	GO:0010224: response to UV-B	2.72E-02
98	GO:0006857: oligopeptide transport	2.78E-02
99	GO:0006096: glycolytic process	2.99E-02
100	GO:0009620: response to fungus	3.19E-02
101	GO:0009555: pollen development	3.65E-02
102	GO:0000398: mRNA splicing, via spliceosome	3.77E-02
103	GO:0006355: regulation of transcription, DNA-templated	3.99E-02
104	GO:0009845: seed germination	4.23E-02
105	GO:0055085: transmembrane transport	4.62E-02
106	GO:0006413: translational initiation	4.78E-02
107	GO:0040008: regulation of growth	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0061133: endopeptidase activator activity	0.00E+00
2	GO:0016530: metallochaperone activity	0.00E+00
3	GO:0034338: short-chain carboxylesterase activity	0.00E+00
4	GO:0047150: betaine-homocysteine S-methyltransferase activity	9.69E-05
5	GO:0010285: L,L-diaminopimelate aminotransferase activity	9.69E-05
6	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.07E-04
7	GO:0015266: protein channel activity	1.93E-04
8	GO:0032934: sterol binding	2.28E-04
9	GO:0003994: aconitate hydratase activity	2.28E-04
10	GO:0000975: regulatory region DNA binding	3.80E-04
11	GO:0005457: GDP-fucose transmembrane transporter activity	3.80E-04
12	GO:0022857: transmembrane transporter activity	4.67E-04
13	GO:0035529: NADH pyrophosphatase activity	5.46E-04
14	GO:0030527: structural constituent of chromatin	5.46E-04
15	GO:0070628: proteasome binding	7.26E-04
16	GO:0015368: calcium:cation antiporter activity	7.26E-04
17	GO:0015369: calcium:proton antiporter activity	7.26E-04
18	GO:0004623: phospholipase A2 activity	9.17E-04
19	GO:0047631: ADP-ribose diphosphatase activity	9.17E-04
20	GO:0000210: NAD+ diphosphatase activity	1.12E-03
21	GO:0015491: cation:cation antiporter activity	1.81E-03
22	GO:0008142: oxysterol binding	2.07E-03
23	GO:0003843: 1,3-beta-D-glucan synthase activity	2.07E-03
24	GO:0030955: potassium ion binding	2.61E-03
25	GO:0004743: pyruvate kinase activity	2.61E-03
26	GO:0015198: oligopeptide transporter activity	3.50E-03
27	GO:0005388: calcium-transporting ATPase activity	3.82E-03
28	GO:0008061: chitin binding	4.49E-03
29	GO:0043130: ubiquitin binding	5.19E-03
30	GO:0003700: transcription factor activity, sequence-specific DNA binding	5.53E-03
31	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	6.31E-03
32	GO:0008810: cellulase activity	6.70E-03
33	GO:0015297: antiporter activity	6.91E-03
34	GO:0005102: receptor binding	7.51E-03
35	GO:0008483: transaminase activity	1.16E-02
36	GO:0003682: chromatin binding	1.19E-02
37	GO:0016413: O-acetyltransferase activity	1.20E-02
38	GO:0030247: polysaccharide binding	1.41E-02
39	GO:0004222: metalloendopeptidase activity	1.62E-02
40	GO:0043565: sequence-specific DNA binding	1.69E-02
41	GO:0004722: protein serine/threonine phosphatase activity	1.83E-02
42	GO:0000149: SNARE binding	1.91E-02
43	GO:0051539: 4 iron, 4 sulfur cluster binding	1.96E-02
44	GO:0005484: SNAP receptor activity	2.14E-02
45	GO:0046872: metal ion binding	2.16E-02
46	GO:0051537: 2 iron, 2 sulfur cluster binding	2.27E-02
47	GO:0051287: NAD binding	2.46E-02
48	GO:0016874: ligase activity	3.26E-02
49	GO:0015035: protein disulfide oxidoreductase activity	3.48E-02
50	GO:0016758: transferase activity, transferring hexosyl groups	3.92E-02
51	GO:0004252: serine-type endopeptidase activity	4.30E-02
52	GO:0030170: pyridoxal phosphate binding	4.30E-02
53	GO:0008565: protein transporter activity	4.54E-02
54	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0005794: Golgi apparatus	4.09E-05
2	GO:0030658: transport vesicle membrane	5.46E-04
3	GO:0000139: Golgi membrane	1.67E-03
4	GO:0031305: integral component of mitochondrial inner membrane	1.81E-03
5	GO:0031902: late endosome membrane	2.04E-03
6	GO:0005742: mitochondrial outer membrane translocase complex	2.07E-03
7	GO:0000148: 1,3-beta-D-glucan synthase complex	2.07E-03
8	GO:0030665: clathrin-coated vesicle membrane	2.61E-03
9	GO:0017119: Golgi transport complex	2.90E-03
10	GO:0016021: integral component of membrane	2.93E-03
11	GO:0008541: proteasome regulatory particle, lid subcomplex	3.20E-03
12	GO:0005743: mitochondrial inner membrane	3.36E-03
13	GO:0031307: integral component of mitochondrial outer membrane	3.50E-03
14	GO:0005744: mitochondrial inner membrane presequence translocase complex	7.10E-03
15	GO:0030136: clathrin-coated vesicle	7.51E-03
16	GO:0005789: endoplasmic reticulum membrane	8.32E-03
17	GO:0005774: vacuolar membrane	8.65E-03
18	GO:0005783: endoplasmic reticulum	9.92E-03
19	GO:0016592: mediator complex	1.01E-02
20	GO:0000785: chromatin	1.01E-02
21	GO:0005788: endoplasmic reticulum lumen	1.30E-02
22	GO:0022625: cytosolic large ribosomal subunit	1.47E-02
23	GO:0000151: ubiquitin ligase complex	1.51E-02
24	GO:0000325: plant-type vacuole	1.68E-02
25	GO:0015934: large ribosomal subunit	1.68E-02
26	GO:0031201: SNARE complex	2.02E-02
27	GO:0016020: membrane	2.51E-02
28	GO:0005635: nuclear envelope	2.78E-02
29	GO:0005887: integral component of plasma membrane	2.80E-02
30	GO:0005681: spliceosomal complex	2.99E-02
31	GO:0016607: nuclear speck	3.05E-02
32	GO:0009706: chloroplast inner membrane	3.41E-02
33	GO:0009543: chloroplast thylakoid lumen	4.00E-02
34	GO:0009524: phragmoplast	4.15E-02