GO Enrichment Analysis of Co-expressed Genes with
AT5G41860
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009173: pyrimidine ribonucleoside monophosphate metabolic process | 0.00E+00 |
| 2 | GO:0006903: vesicle targeting | 0.00E+00 |
| 3 | GO:0036258: multivesicular body assembly | 0.00E+00 |
| 4 | GO:0010499: proteasomal ubiquitin-independent protein catabolic process | 0.00E+00 |
| 5 | GO:0006511: ubiquitin-dependent protein catabolic process | 7.85E-08 |
| 6 | GO:0030163: protein catabolic process | 3.79E-07 |
| 7 | GO:0070676: intralumenal vesicle formation | 2.19E-06 |
| 8 | GO:0042176: regulation of protein catabolic process | 1.09E-05 |
| 9 | GO:1900424: regulation of defense response to bacterium | 6.42E-05 |
| 10 | GO:0035266: meristem growth | 6.42E-05 |
| 11 | GO:0007292: female gamete generation | 6.42E-05 |
| 12 | GO:0015031: protein transport | 9.69E-05 |
| 13 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 1.55E-04 |
| 14 | GO:0051788: response to misfolded protein | 1.55E-04 |
| 15 | GO:0080026: response to indolebutyric acid | 1.55E-04 |
| 16 | GO:0060968: regulation of gene silencing | 2.63E-04 |
| 17 | GO:0009062: fatty acid catabolic process | 2.63E-04 |
| 18 | GO:0006612: protein targeting to membrane | 3.82E-04 |
| 19 | GO:0006893: Golgi to plasma membrane transport | 3.82E-04 |
| 20 | GO:0071786: endoplasmic reticulum tubular network organization | 3.82E-04 |
| 21 | GO:0080024: indolebutyric acid metabolic process | 3.82E-04 |
| 22 | GO:0033320: UDP-D-xylose biosynthetic process | 5.10E-04 |
| 23 | GO:0006221: pyrimidine nucleotide biosynthetic process | 5.10E-04 |
| 24 | GO:0033356: UDP-L-arabinose metabolic process | 5.10E-04 |
| 25 | GO:0098719: sodium ion import across plasma membrane | 6.45E-04 |
| 26 | GO:0006564: L-serine biosynthetic process | 6.45E-04 |
| 27 | GO:0005513: detection of calcium ion | 6.45E-04 |
| 28 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 7.90E-04 |
| 29 | GO:0048827: phyllome development | 7.90E-04 |
| 30 | GO:0048232: male gamete generation | 7.90E-04 |
| 31 | GO:0006555: methionine metabolic process | 7.90E-04 |
| 32 | GO:0043248: proteasome assembly | 7.90E-04 |
| 33 | GO:0042732: D-xylose metabolic process | 7.90E-04 |
| 34 | GO:0019509: L-methionine salvage from methylthioadenosine | 9.40E-04 |
| 35 | GO:0009612: response to mechanical stimulus | 9.40E-04 |
| 36 | GO:0045087: innate immune response | 1.02E-03 |
| 37 | GO:0006744: ubiquinone biosynthetic process | 1.10E-03 |
| 38 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 1.10E-03 |
| 39 | GO:0016192: vesicle-mediated transport | 1.20E-03 |
| 40 | GO:0006102: isocitrate metabolic process | 1.26E-03 |
| 41 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 1.26E-03 |
| 42 | GO:0010078: maintenance of root meristem identity | 1.26E-03 |
| 43 | GO:0060321: acceptance of pollen | 1.44E-03 |
| 44 | GO:0009846: pollen germination | 1.62E-03 |
| 45 | GO:0046685: response to arsenic-containing substance | 1.62E-03 |
| 46 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.79E-03 |
| 47 | GO:0051453: regulation of intracellular pH | 1.81E-03 |
| 48 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 1.81E-03 |
| 49 | GO:0048829: root cap development | 2.01E-03 |
| 50 | GO:0010015: root morphogenesis | 2.21E-03 |
| 51 | GO:0006790: sulfur compound metabolic process | 2.42E-03 |
| 52 | GO:0055046: microgametogenesis | 2.64E-03 |
| 53 | GO:0009933: meristem structural organization | 2.87E-03 |
| 54 | GO:0007034: vacuolar transport | 2.87E-03 |
| 55 | GO:0090351: seedling development | 3.09E-03 |
| 56 | GO:0046854: phosphatidylinositol phosphorylation | 3.09E-03 |
| 57 | GO:0009225: nucleotide-sugar metabolic process | 3.09E-03 |
| 58 | GO:0007031: peroxisome organization | 3.09E-03 |
| 59 | GO:0000027: ribosomal large subunit assembly | 3.57E-03 |
| 60 | GO:0010187: negative regulation of seed germination | 3.57E-03 |
| 61 | GO:0046686: response to cadmium ion | 3.71E-03 |
| 62 | GO:0009555: pollen development | 3.79E-03 |
| 63 | GO:0008299: isoprenoid biosynthetic process | 3.82E-03 |
| 64 | GO:0080092: regulation of pollen tube growth | 4.34E-03 |
| 65 | GO:0030433: ubiquitin-dependent ERAD pathway | 4.34E-03 |
| 66 | GO:0009561: megagametogenesis | 4.87E-03 |
| 67 | GO:0042147: retrograde transport, endosome to Golgi | 5.15E-03 |
| 68 | GO:0034220: ion transmembrane transport | 5.43E-03 |
| 69 | GO:0006814: sodium ion transport | 6.01E-03 |
| 70 | GO:0055072: iron ion homeostasis | 6.31E-03 |
| 71 | GO:0010183: pollen tube guidance | 6.31E-03 |
| 72 | GO:0006635: fatty acid beta-oxidation | 6.61E-03 |
| 73 | GO:0009860: pollen tube growth | 6.98E-03 |
| 74 | GO:0071805: potassium ion transmembrane transport | 7.88E-03 |
| 75 | GO:0006904: vesicle docking involved in exocytosis | 7.88E-03 |
| 76 | GO:0030244: cellulose biosynthetic process | 1.03E-02 |
| 77 | GO:0048767: root hair elongation | 1.07E-02 |
| 78 | GO:0010311: lateral root formation | 1.07E-02 |
| 79 | GO:0009832: plant-type cell wall biogenesis | 1.07E-02 |
| 80 | GO:0006499: N-terminal protein myristoylation | 1.10E-02 |
| 81 | GO:0009408: response to heat | 1.19E-02 |
| 82 | GO:0009867: jasmonic acid mediated signaling pathway | 1.22E-02 |
| 83 | GO:0006099: tricarboxylic acid cycle | 1.25E-02 |
| 84 | GO:0006887: exocytosis | 1.37E-02 |
| 85 | GO:0009965: leaf morphogenesis | 1.58E-02 |
| 86 | GO:0048367: shoot system development | 2.07E-02 |
| 87 | GO:0009553: embryo sac development | 2.26E-02 |
| 88 | GO:0009793: embryo development ending in seed dormancy | 2.68E-02 |
| 89 | GO:0009790: embryo development | 3.02E-02 |
| 90 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 3.69E-02 |
| 91 | GO:0006470: protein dephosphorylation | 3.75E-02 |
| 92 | GO:0006508: proteolysis | 3.80E-02 |
| 93 | GO:0009617: response to bacterium | 3.86E-02 |
| 94 | GO:0009651: response to salt stress | 4.24E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016504: peptidase activator activity | 0.00E+00 |
| 2 | GO:0070577: lysine-acetylated histone binding | 0.00E+00 |
| 3 | GO:0004298: threonine-type endopeptidase activity | 4.96E-06 |
| 4 | GO:0030234: enzyme regulator activity | 6.67E-05 |
| 5 | GO:0004190: aspartic-type endopeptidase activity | 1.39E-04 |
| 6 | GO:0010297: heteropolysaccharide binding | 1.55E-04 |
| 7 | GO:0004617: phosphoglycerate dehydrogenase activity | 1.55E-04 |
| 8 | GO:0050347: trans-octaprenyltranstransferase activity | 1.55E-04 |
| 9 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 1.55E-04 |
| 10 | GO:0004127: cytidylate kinase activity | 1.55E-04 |
| 11 | GO:0043130: ubiquitin binding | 1.75E-04 |
| 12 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 2.63E-04 |
| 13 | GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity | 2.63E-04 |
| 14 | GO:0004165: dodecenoyl-CoA delta-isomerase activity | 3.82E-04 |
| 15 | GO:0009041: uridylate kinase activity | 3.82E-04 |
| 16 | GO:0004449: isocitrate dehydrogenase (NAD+) activity | 3.82E-04 |
| 17 | GO:0004659: prenyltransferase activity | 5.10E-04 |
| 18 | GO:0070628: proteasome binding | 5.10E-04 |
| 19 | GO:0048040: UDP-glucuronate decarboxylase activity | 7.90E-04 |
| 20 | GO:0031593: polyubiquitin binding | 7.90E-04 |
| 21 | GO:0036402: proteasome-activating ATPase activity | 7.90E-04 |
| 22 | GO:0070403: NAD+ binding | 9.40E-04 |
| 23 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 9.40E-04 |
| 24 | GO:0004656: procollagen-proline 4-dioxygenase activity | 9.40E-04 |
| 25 | GO:0003746: translation elongation factor activity | 1.02E-03 |
| 26 | GO:0008233: peptidase activity | 1.11E-03 |
| 27 | GO:0004161: dimethylallyltranstransferase activity | 2.21E-03 |
| 28 | GO:0015386: potassium:proton antiporter activity | 2.21E-03 |
| 29 | GO:0017025: TBP-class protein binding | 3.09E-03 |
| 30 | GO:0004725: protein tyrosine phosphatase activity | 3.33E-03 |
| 31 | GO:0031418: L-ascorbic acid binding | 3.57E-03 |
| 32 | GO:0047134: protein-disulfide reductase activity | 5.15E-03 |
| 33 | GO:0004791: thioredoxin-disulfide reductase activity | 6.01E-03 |
| 34 | GO:0015385: sodium:proton antiporter activity | 7.24E-03 |
| 35 | GO:0008237: metallopeptidase activity | 7.88E-03 |
| 36 | GO:0016597: amino acid binding | 8.21E-03 |
| 37 | GO:0015250: water channel activity | 8.54E-03 |
| 38 | GO:0004721: phosphoprotein phosphatase activity | 9.57E-03 |
| 39 | GO:0003824: catalytic activity | 1.04E-02 |
| 40 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.22E-02 |
| 41 | GO:0035091: phosphatidylinositol binding | 1.54E-02 |
| 42 | GO:0051287: NAD binding | 1.66E-02 |
| 43 | GO:0016887: ATPase activity | 1.85E-02 |
| 44 | GO:0031625: ubiquitin protein ligase binding | 1.93E-02 |
| 45 | GO:0008565: protein transporter activity | 3.08E-02 |
| 46 | GO:0005509: calcium ion binding | 3.94E-02 |
| 47 | GO:0042802: identical protein binding | 4.04E-02 |
| 48 | GO:0008168: methyltransferase activity | 4.52E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000502: proteasome complex | 5.17E-11 |
| 2 | GO:0005839: proteasome core complex | 5.27E-08 |
| 3 | GO:0008541: proteasome regulatory particle, lid subcomplex | 9.37E-07 |
| 4 | GO:0005829: cytosol | 1.03E-05 |
| 5 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 2.83E-05 |
| 6 | GO:0009510: plasmodesmatal desmotubule | 6.42E-05 |
| 7 | GO:0071782: endoplasmic reticulum tubular network | 3.82E-04 |
| 8 | GO:0030660: Golgi-associated vesicle membrane | 5.10E-04 |
| 9 | GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane | 5.10E-04 |
| 10 | GO:0032580: Golgi cisterna membrane | 5.32E-04 |
| 11 | GO:0000813: ESCRT I complex | 6.45E-04 |
| 12 | GO:0030904: retromer complex | 7.90E-04 |
| 13 | GO:0031597: cytosolic proteasome complex | 9.40E-04 |
| 14 | GO:0000815: ESCRT III complex | 9.40E-04 |
| 15 | GO:0031595: nuclear proteasome complex | 1.10E-03 |
| 16 | GO:0031902: late endosome membrane | 1.20E-03 |
| 17 | GO:0031982: vesicle | 1.26E-03 |
| 18 | GO:0019773: proteasome core complex, alpha-subunit complex | 1.44E-03 |
| 19 | GO:0008540: proteasome regulatory particle, base subcomplex | 1.81E-03 |
| 20 | GO:0010008: endosome membrane | 2.11E-03 |
| 21 | GO:0005765: lysosomal membrane | 2.21E-03 |
| 22 | GO:0005783: endoplasmic reticulum | 3.32E-03 |
| 23 | GO:0005789: endoplasmic reticulum membrane | 3.60E-03 |
| 24 | GO:0009504: cell plate | 6.31E-03 |
| 25 | GO:0000145: exocyst | 6.92E-03 |
| 26 | GO:0005778: peroxisomal membrane | 7.88E-03 |
| 27 | GO:0005788: endoplasmic reticulum lumen | 8.88E-03 |
| 28 | GO:0019005: SCF ubiquitin ligase complex | 1.03E-02 |
| 29 | GO:0009536: plastid | 1.20E-02 |
| 30 | GO:0005856: cytoskeleton | 1.58E-02 |
| 31 | GO:0005886: plasma membrane | 1.68E-02 |
| 32 | GO:0005794: Golgi apparatus | 2.06E-02 |
| 33 | GO:0005777: peroxisome | 2.43E-02 |
| 34 | GO:0005623: cell | 2.76E-02 |
| 35 | GO:0009524: phragmoplast | 2.81E-02 |
| 36 | GO:0009506: plasmodesma | 3.29E-02 |
| 37 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.96E-02 |