GO Enrichment Analysis of Co-expressed Genes with
AT5G40950
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:0018131: oxazole or thiazole biosynthetic process | 0.00E+00 |
| 4 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 5 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 6 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 7 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.24E-08 |
| 8 | GO:0015979: photosynthesis | 4.40E-07 |
| 9 | GO:0010190: cytochrome b6f complex assembly | 2.87E-05 |
| 10 | GO:0032544: plastid translation | 9.00E-05 |
| 11 | GO:0010027: thylakoid membrane organization | 1.02E-04 |
| 12 | GO:0006659: phosphatidylserine biosynthetic process | 1.16E-04 |
| 13 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.16E-04 |
| 14 | GO:0009773: photosynthetic electron transport in photosystem I | 1.86E-04 |
| 15 | GO:0019684: photosynthesis, light reaction | 1.86E-04 |
| 16 | GO:0034755: iron ion transmembrane transport | 2.69E-04 |
| 17 | GO:0071457: cellular response to ozone | 2.69E-04 |
| 18 | GO:0006168: adenine salvage | 6.38E-04 |
| 19 | GO:0006986: response to unfolded protein | 6.38E-04 |
| 20 | GO:0006166: purine ribonucleoside salvage | 6.38E-04 |
| 21 | GO:0071484: cellular response to light intensity | 6.38E-04 |
| 22 | GO:0051085: chaperone mediated protein folding requiring cofactor | 6.38E-04 |
| 23 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 6.38E-04 |
| 24 | GO:0006546: glycine catabolic process | 8.47E-04 |
| 25 | GO:0006021: inositol biosynthetic process | 8.47E-04 |
| 26 | GO:0071486: cellular response to high light intensity | 8.47E-04 |
| 27 | GO:0015994: chlorophyll metabolic process | 8.47E-04 |
| 28 | GO:0010107: potassium ion import | 8.47E-04 |
| 29 | GO:0009791: post-embryonic development | 8.79E-04 |
| 30 | GO:0098719: sodium ion import across plasma membrane | 1.07E-03 |
| 31 | GO:0006564: L-serine biosynthetic process | 1.07E-03 |
| 32 | GO:0010236: plastoquinone biosynthetic process | 1.07E-03 |
| 33 | GO:0000278: mitotic cell cycle | 1.07E-03 |
| 34 | GO:0044209: AMP salvage | 1.07E-03 |
| 35 | GO:0006465: signal peptide processing | 1.07E-03 |
| 36 | GO:0071493: cellular response to UV-B | 1.07E-03 |
| 37 | GO:0006751: glutathione catabolic process | 1.31E-03 |
| 38 | GO:0042549: photosystem II stabilization | 1.31E-03 |
| 39 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 1.31E-03 |
| 40 | GO:0009228: thiamine biosynthetic process | 1.31E-03 |
| 41 | GO:0010189: vitamin E biosynthetic process | 1.56E-03 |
| 42 | GO:0009955: adaxial/abaxial pattern specification | 1.56E-03 |
| 43 | GO:1901259: chloroplast rRNA processing | 1.56E-03 |
| 44 | GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity | 1.56E-03 |
| 45 | GO:0055114: oxidation-reduction process | 2.05E-03 |
| 46 | GO:0055075: potassium ion homeostasis | 2.13E-03 |
| 47 | GO:0048564: photosystem I assembly | 2.13E-03 |
| 48 | GO:0017004: cytochrome complex assembly | 2.43E-03 |
| 49 | GO:0071482: cellular response to light stimulus | 2.43E-03 |
| 50 | GO:0009657: plastid organization | 2.43E-03 |
| 51 | GO:0019430: removal of superoxide radicals | 2.43E-03 |
| 52 | GO:0090333: regulation of stomatal closure | 2.74E-03 |
| 53 | GO:0009245: lipid A biosynthetic process | 2.74E-03 |
| 54 | GO:0010114: response to red light | 2.80E-03 |
| 55 | GO:0006810: transport | 2.96E-03 |
| 56 | GO:0007346: regulation of mitotic cell cycle | 3.07E-03 |
| 57 | GO:0051453: regulation of intracellular pH | 3.07E-03 |
| 58 | GO:0006879: cellular iron ion homeostasis | 3.76E-03 |
| 59 | GO:0006415: translational termination | 3.76E-03 |
| 60 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.76E-03 |
| 61 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.13E-03 |
| 62 | GO:0009767: photosynthetic electron transport chain | 4.50E-03 |
| 63 | GO:0010143: cutin biosynthetic process | 4.89E-03 |
| 64 | GO:0010207: photosystem II assembly | 4.89E-03 |
| 65 | GO:0042023: DNA endoreduplication | 5.70E-03 |
| 66 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.56E-03 |
| 67 | GO:0019915: lipid storage | 7.00E-03 |
| 68 | GO:0006633: fatty acid biosynthetic process | 8.39E-03 |
| 69 | GO:0009561: megagametogenesis | 8.40E-03 |
| 70 | GO:0016117: carotenoid biosynthetic process | 8.88E-03 |
| 71 | GO:0009735: response to cytokinin | 9.24E-03 |
| 72 | GO:0071472: cellular response to salt stress | 9.89E-03 |
| 73 | GO:0006885: regulation of pH | 9.89E-03 |
| 74 | GO:0006814: sodium ion transport | 1.04E-02 |
| 75 | GO:0008654: phospholipid biosynthetic process | 1.09E-02 |
| 76 | GO:0009658: chloroplast organization | 1.43E-02 |
| 77 | GO:0042128: nitrate assimilation | 1.61E-02 |
| 78 | GO:0006974: cellular response to DNA damage stimulus | 1.61E-02 |
| 79 | GO:0015995: chlorophyll biosynthetic process | 1.67E-02 |
| 80 | GO:0018298: protein-chromophore linkage | 1.80E-02 |
| 81 | GO:0009817: defense response to fungus, incompatible interaction | 1.80E-02 |
| 82 | GO:0010218: response to far red light | 1.92E-02 |
| 83 | GO:0009637: response to blue light | 2.12E-02 |
| 84 | GO:0030001: metal ion transport | 2.33E-02 |
| 85 | GO:0032259: methylation | 2.51E-02 |
| 86 | GO:0006412: translation | 2.64E-02 |
| 87 | GO:0006486: protein glycosylation | 3.15E-02 |
| 88 | GO:0006417: regulation of translation | 3.38E-02 |
| 89 | GO:0006396: RNA processing | 4.13E-02 |
| 90 | GO:0051726: regulation of cell cycle | 4.21E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 2 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 3 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 4 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 3.67E-08 |
| 5 | GO:0048038: quinone binding | 5.85E-05 |
| 6 | GO:0019843: rRNA binding | 1.00E-04 |
| 7 | GO:0009374: biotin binding | 1.16E-04 |
| 8 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.16E-04 |
| 9 | GO:0031072: heat shock protein binding | 2.47E-04 |
| 10 | GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity | 2.69E-04 |
| 11 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.69E-04 |
| 12 | GO:0047746: chlorophyllase activity | 2.69E-04 |
| 13 | GO:0003839: gamma-glutamylcyclotransferase activity | 2.69E-04 |
| 14 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.69E-04 |
| 15 | GO:0004047: aminomethyltransferase activity | 2.69E-04 |
| 16 | GO:0004512: inositol-3-phosphate synthase activity | 2.69E-04 |
| 17 | GO:0004751: ribose-5-phosphate isomerase activity | 4.45E-04 |
| 18 | GO:0070402: NADPH binding | 4.45E-04 |
| 19 | GO:0016149: translation release factor activity, codon specific | 6.38E-04 |
| 20 | GO:0016851: magnesium chelatase activity | 6.38E-04 |
| 21 | GO:0003999: adenine phosphoribosyltransferase activity | 6.38E-04 |
| 22 | GO:0051082: unfolded protein binding | 6.82E-04 |
| 23 | GO:0003989: acetyl-CoA carboxylase activity | 1.07E-03 |
| 24 | GO:0031177: phosphopantetheine binding | 1.31E-03 |
| 25 | GO:0015081: sodium ion transmembrane transporter activity | 1.31E-03 |
| 26 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.31E-03 |
| 27 | GO:0005509: calcium ion binding | 1.31E-03 |
| 28 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.31E-03 |
| 29 | GO:0004784: superoxide dismutase activity | 1.31E-03 |
| 30 | GO:0000035: acyl binding | 1.56E-03 |
| 31 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.56E-03 |
| 32 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.13E-03 |
| 33 | GO:0004033: aldo-keto reductase (NADP) activity | 2.13E-03 |
| 34 | GO:0008135: translation factor activity, RNA binding | 2.43E-03 |
| 35 | GO:0003747: translation release factor activity | 2.74E-03 |
| 36 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.03E-03 |
| 37 | GO:0005381: iron ion transmembrane transporter activity | 3.07E-03 |
| 38 | GO:0047372: acylglycerol lipase activity | 3.76E-03 |
| 39 | GO:0015386: potassium:proton antiporter activity | 3.76E-03 |
| 40 | GO:0008378: galactosyltransferase activity | 4.13E-03 |
| 41 | GO:0008266: poly(U) RNA binding | 4.89E-03 |
| 42 | GO:0003735: structural constituent of ribosome | 5.04E-03 |
| 43 | GO:0009055: electron carrier activity | 5.46E-03 |
| 44 | GO:0031409: pigment binding | 5.70E-03 |
| 45 | GO:0043130: ubiquitin binding | 6.12E-03 |
| 46 | GO:0005528: FK506 binding | 6.12E-03 |
| 47 | GO:0051087: chaperone binding | 6.56E-03 |
| 48 | GO:0030570: pectate lyase activity | 7.92E-03 |
| 49 | GO:0003727: single-stranded RNA binding | 8.40E-03 |
| 50 | GO:0019901: protein kinase binding | 1.09E-02 |
| 51 | GO:0015385: sodium:proton antiporter activity | 1.26E-02 |
| 52 | GO:0016791: phosphatase activity | 1.31E-02 |
| 53 | GO:0008483: transaminase activity | 1.37E-02 |
| 54 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.37E-02 |
| 55 | GO:0008168: methyltransferase activity | 1.38E-02 |
| 56 | GO:0016597: amino acid binding | 1.43E-02 |
| 57 | GO:0016168: chlorophyll binding | 1.55E-02 |
| 58 | GO:0004721: phosphoprotein phosphatase activity | 1.67E-02 |
| 59 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.73E-02 |
| 60 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.73E-02 |
| 61 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 1.92E-02 |
| 62 | GO:0003746: translation elongation factor activity | 2.12E-02 |
| 63 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.19E-02 |
| 64 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.26E-02 |
| 65 | GO:0042393: histone binding | 2.33E-02 |
| 66 | GO:0043621: protein self-association | 2.69E-02 |
| 67 | GO:0035091: phosphatidylinositol binding | 2.69E-02 |
| 68 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.84E-02 |
| 69 | GO:0051287: NAD binding | 2.91E-02 |
| 70 | GO:0003690: double-stranded DNA binding | 3.22E-02 |
| 71 | GO:0016491: oxidoreductase activity | 3.55E-02 |
| 72 | GO:0030599: pectinesterase activity | 3.87E-02 |
| 73 | GO:0016746: transferase activity, transferring acyl groups | 4.13E-02 |
| 74 | GO:0016758: transferase activity, transferring hexosyl groups | 4.65E-02 |
| 75 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 7.30E-32 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 6.54E-22 |
| 3 | GO:0009570: chloroplast stroma | 6.00E-17 |
| 4 | GO:0009579: thylakoid | 2.25E-14 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 5.34E-12 |
| 6 | GO:0009654: photosystem II oxygen evolving complex | 2.21E-11 |
| 7 | GO:0009941: chloroplast envelope | 1.68E-10 |
| 8 | GO:0031977: thylakoid lumen | 2.33E-10 |
| 9 | GO:0009534: chloroplast thylakoid | 2.68E-10 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.05E-08 |
| 11 | GO:0019898: extrinsic component of membrane | 2.28E-08 |
| 12 | GO:0030095: chloroplast photosystem II | 7.57E-06 |
| 13 | GO:0005787: signal peptidase complex | 1.16E-04 |
| 14 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.16E-04 |
| 15 | GO:0009547: plastid ribosome | 1.16E-04 |
| 16 | GO:0005840: ribosome | 3.80E-04 |
| 17 | GO:0010007: magnesium chelatase complex | 4.45E-04 |
| 18 | GO:0009317: acetyl-CoA carboxylase complex | 4.45E-04 |
| 19 | GO:0009522: photosystem I | 8.22E-04 |
| 20 | GO:0009539: photosystem II reaction center | 2.43E-03 |
| 21 | GO:0000307: cyclin-dependent protein kinase holoenzyme complex | 2.43E-03 |
| 22 | GO:0005763: mitochondrial small ribosomal subunit | 2.74E-03 |
| 23 | GO:0000311: plastid large ribosomal subunit | 4.13E-03 |
| 24 | GO:0009508: plastid chromosome | 4.50E-03 |
| 25 | GO:0016020: membrane | 5.05E-03 |
| 26 | GO:0030076: light-harvesting complex | 5.29E-03 |
| 27 | GO:0010287: plastoglobule | 6.32E-03 |
| 28 | GO:0042651: thylakoid membrane | 6.56E-03 |
| 29 | GO:0009523: photosystem II | 1.09E-02 |
| 30 | GO:0010319: stromule | 1.37E-02 |
| 31 | GO:0009295: nucleoid | 1.37E-02 |
| 32 | GO:0031969: chloroplast membrane | 1.78E-02 |
| 33 | GO:0019005: SCF ubiquitin ligase complex | 1.80E-02 |
| 34 | GO:0009536: plastid | 3.25E-02 |
| 35 | GO:0009706: chloroplast inner membrane | 4.04E-02 |
| 36 | GO:0022626: cytosolic ribosome | 4.44E-02 |