co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G39950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090400: stress-induced premature senescence	0.00E+00
2	GO:0080149: sucrose induced translational repression	0.00E+00
3	GO:0018063: cytochrome c-heme linkage	0.00E+00
4	GO:1904250: positive regulation of age-related resistance	0.00E+00
5	GO:0071985: multivesicular body sorting pathway	0.00E+00
6	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
7	GO:0005993: trehalose catabolic process	0.00E+00
8	GO:0007275: multicellular organism development	1.65E-06
9	GO:0016192: vesicle-mediated transport	2.41E-05
10	GO:1900057: positive regulation of leaf senescence	9.72E-05
11	GO:0006605: protein targeting	1.25E-04
12	GO:1900384: regulation of flavonol biosynthetic process	1.67E-04
13	GO:1903648: positive regulation of chlorophyll catabolic process	1.67E-04
14	GO:0042350: GDP-L-fucose biosynthetic process	1.67E-04
15	GO:1990641: response to iron ion starvation	1.67E-04
16	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.67E-04
17	GO:0006101: citrate metabolic process	3.78E-04
18	GO:0015709: thiosulfate transport	3.78E-04
19	GO:0071422: succinate transmembrane transport	3.78E-04
20	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	3.78E-04
21	GO:0009805: coumarin biosynthetic process	3.78E-04
22	GO:0042853: L-alanine catabolic process	3.78E-04
23	GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex	3.78E-04
24	GO:0051707: response to other organism	5.67E-04
25	GO:0000162: tryptophan biosynthetic process	5.76E-04
26	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	6.19E-04
27	GO:0010253: UDP-rhamnose biosynthetic process	6.19E-04
28	GO:0072661: protein targeting to plasma membrane	6.19E-04
29	GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity	6.19E-04
30	GO:0009226: nucleotide-sugar biosynthetic process	8.83E-04
31	GO:0055070: copper ion homeostasis	8.83E-04
32	GO:0001676: long-chain fatty acid metabolic process	8.83E-04
33	GO:0015729: oxaloacetate transport	8.83E-04
34	GO:1902584: positive regulation of response to water deprivation	1.17E-03
35	GO:0006621: protein retention in ER lumen	1.17E-03
36	GO:0071423: malate transmembrane transport	1.48E-03
37	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.48E-03
38	GO:0006097: glyoxylate cycle	1.48E-03
39	GO:0045927: positive regulation of growth	1.48E-03
40	GO:0006886: intracellular protein transport	1.50E-03
41	GO:0015031: protein transport	1.55E-03
42	GO:0035435: phosphate ion transmembrane transport	1.83E-03
43	GO:0006014: D-ribose metabolic process	1.83E-03
44	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	1.83E-03
45	GO:0006555: methionine metabolic process	1.83E-03
46	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.83E-03
47	GO:0010315: auxin efflux	1.83E-03
48	GO:0034389: lipid particle organization	2.19E-03
49	GO:0017148: negative regulation of translation	2.19E-03
50	GO:0080113: regulation of seed growth	2.19E-03
51	GO:0019509: L-methionine salvage from methylthioadenosine	2.19E-03
52	GO:0010150: leaf senescence	2.54E-03
53	GO:0008272: sulfate transport	2.58E-03
54	GO:1902074: response to salt	2.58E-03
55	GO:0080186: developmental vegetative growth	2.58E-03
56	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.58E-03
57	GO:0043068: positive regulation of programmed cell death	2.99E-03
58	GO:0045010: actin nucleation	2.99E-03
59	GO:0006102: isocitrate metabolic process	2.99E-03
60	GO:0007155: cell adhesion	2.99E-03
61	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.99E-03
62	GO:0017004: cytochrome complex assembly	3.41E-03
63	GO:0009699: phenylpropanoid biosynthetic process	3.41E-03
64	GO:0006002: fructose 6-phosphate metabolic process	3.41E-03
65	GO:0015996: chlorophyll catabolic process	3.41E-03
66	GO:0009651: response to salt stress	3.48E-03
67	GO:0000902: cell morphogenesis	3.86E-03
68	GO:0009835: fruit ripening	3.86E-03
69	GO:0006631: fatty acid metabolic process	4.26E-03
70	GO:0009738: abscisic acid-activated signaling pathway	4.46E-03
71	GO:0009688: abscisic acid biosynthetic process	4.81E-03
72	GO:0016441: posttranscriptional gene silencing	4.81E-03
73	GO:0051555: flavonol biosynthetic process	4.81E-03
74	GO:0009636: response to toxic substance	5.18E-03
75	GO:0045037: protein import into chloroplast stroma	5.84E-03
76	GO:0007015: actin filament organization	6.93E-03
77	GO:0034605: cellular response to heat	6.93E-03
78	GO:0090351: seedling development	7.50E-03
79	GO:0007033: vacuole organization	7.50E-03
80	GO:0010053: root epidermal cell differentiation	7.50E-03
81	GO:0009225: nucleotide-sugar metabolic process	7.50E-03
82	GO:0009825: multidimensional cell growth	7.50E-03
83	GO:0034976: response to endoplasmic reticulum stress	8.10E-03
84	GO:0051302: regulation of cell division	9.33E-03
85	GO:0006874: cellular calcium ion homeostasis	9.33E-03
86	GO:0019915: lipid storage	9.97E-03
87	GO:0019748: secondary metabolic process	1.06E-02
88	GO:0042127: regulation of cell proliferation	1.20E-02
89	GO:0009414: response to water deprivation	1.32E-02
90	GO:0010118: stomatal movement	1.34E-02
91	GO:0010182: sugar mediated signaling pathway	1.41E-02
92	GO:0019252: starch biosynthetic process	1.56E-02
93	GO:0006623: protein targeting to vacuole	1.56E-02
94	GO:0010193: response to ozone	1.64E-02
95	GO:0016032: viral process	1.72E-02
96	GO:0006470: protein dephosphorylation	1.75E-02
97	GO:0019760: glucosinolate metabolic process	1.88E-02
98	GO:0051607: defense response to virus	2.04E-02
99	GO:0001666: response to hypoxia	2.13E-02
100	GO:0010029: regulation of seed germination	2.22E-02
101	GO:0009816: defense response to bacterium, incompatible interaction	2.22E-02
102	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.22E-02
103	GO:0006906: vesicle fusion	2.30E-02
104	GO:0045893: positive regulation of transcription, DNA-templated	2.34E-02
105	GO:0009817: defense response to fungus, incompatible interaction	2.57E-02
106	GO:0046686: response to cadmium ion	2.64E-02
107	GO:0009407: toxin catabolic process	2.76E-02
108	GO:0048527: lateral root development	2.85E-02
109	GO:0010043: response to zinc ion	2.85E-02
110	GO:0006511: ubiquitin-dependent protein catabolic process	2.89E-02
111	GO:0006099: tricarboxylic acid cycle	3.14E-02
112	GO:0006839: mitochondrial transport	3.34E-02
113	GO:0006887: exocytosis	3.44E-02
114	GO:0042542: response to hydrogen peroxide	3.55E-02
115	GO:0010114: response to red light	3.65E-02
116	GO:0009744: response to sucrose	3.65E-02
117	GO:0000209: protein polyubiquitination	3.75E-02
118	GO:0009965: leaf morphogenesis	3.96E-02
119	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.18E-02
120	GO:0055114: oxidation-reduction process	4.28E-02
121	GO:0009809: lignin biosynthetic process	4.51E-02
122	GO:0009736: cytokinin-activated signaling pathway	4.51E-02
123	GO:0010224: response to UV-B	4.62E-02
124	GO:0051603: proteolysis involved in cellular protein catabolic process	4.62E-02
125	GO:0006979: response to oxidative stress	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0004555: alpha,alpha-trehalase activity	0.00E+00
2	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
3	GO:0102867: molybdenum cofactor sulfurtransferase activity	0.00E+00
4	GO:0005046: KDEL sequence binding	0.00E+00
5	GO:0061133: endopeptidase activator activity	0.00E+00
6	GO:0034338: short-chain carboxylesterase activity	0.00E+00
7	GO:0008320: protein transmembrane transporter activity	9.72E-05
8	GO:0030942: endoplasmic reticulum signal peptide binding	1.67E-04
9	GO:0102293: pheophytinase b activity	1.67E-04
10	GO:0032266: phosphatidylinositol-3-phosphate binding	1.67E-04
11	GO:0009000: selenocysteine lyase activity	1.67E-04
12	GO:0016229: steroid dehydrogenase activity	1.67E-04
13	GO:0050577: GDP-L-fucose synthase activity	1.67E-04
14	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.67E-04
15	GO:0015927: trehalase activity	1.67E-04
16	GO:0070401: NADP+ binding	1.67E-04
17	GO:0050377: UDP-glucose 4,6-dehydratase activity	3.78E-04
18	GO:0015117: thiosulfate transmembrane transporter activity	3.78E-04
19	GO:1901677: phosphate transmembrane transporter activity	3.78E-04
20	GO:0047746: chlorophyllase activity	3.78E-04
21	GO:0010297: heteropolysaccharide binding	3.78E-04
22	GO:0008460: dTDP-glucose 4,6-dehydratase activity	3.78E-04
23	GO:0003994: aconitate hydratase activity	3.78E-04
24	GO:0010280: UDP-L-rhamnose synthase activity	3.78E-04
25	GO:0015141: succinate transmembrane transporter activity	6.19E-04
26	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	6.19E-04
27	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.19E-04
28	GO:0005310: dicarboxylic acid transmembrane transporter activity	6.19E-04
29	GO:0000975: regulatory region DNA binding	6.19E-04
30	GO:0043130: ubiquitin binding	6.38E-04
31	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	8.83E-04
32	GO:0015131: oxaloacetate transmembrane transporter activity	8.83E-04
33	GO:0035529: NADH pyrophosphatase activity	8.83E-04
34	GO:0016656: monodehydroascorbate reductase (NADH) activity	8.83E-04
35	GO:0017077: oxidative phosphorylation uncoupler activity	8.83E-04
36	GO:0070628: proteasome binding	1.17E-03
37	GO:0004834: tryptophan synthase activity	1.17E-03
38	GO:0046923: ER retention sequence binding	1.17E-03
39	GO:0016853: isomerase activity	1.33E-03
40	GO:0004623: phospholipase A2 activity	1.48E-03
41	GO:0047631: ADP-ribose diphosphatase activity	1.48E-03
42	GO:0030151: molybdenum ion binding	1.48E-03
43	GO:0000210: NAD+ diphosphatase activity	1.83E-03
44	GO:0030170: pyridoxal phosphate binding	1.92E-03
45	GO:0004747: ribokinase activity	2.19E-03
46	GO:0004656: procollagen-proline 4-dioxygenase activity	2.19E-03
47	GO:0102391: decanoate--CoA ligase activity	2.19E-03
48	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.19E-03
49	GO:0004467: long-chain fatty acid-CoA ligase activity	2.58E-03
50	GO:0003872: 6-phosphofructokinase activity	2.58E-03
51	GO:0015140: malate transmembrane transporter activity	2.58E-03
52	GO:0004033: aldo-keto reductase (NADP) activity	2.99E-03
53	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.99E-03
54	GO:0008865: fructokinase activity	2.99E-03
55	GO:0052747: sinapyl alcohol dehydrogenase activity	2.99E-03
56	GO:0008312: 7S RNA binding	2.99E-03
57	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.58E-03
58	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.86E-03
59	GO:0030234: enzyme regulator activity	4.81E-03
60	GO:0005198: structural molecule activity	5.18E-03
61	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.84E-03
62	GO:0015116: sulfate transmembrane transporter activity	5.84E-03
63	GO:0031072: heat shock protein binding	6.38E-03
64	GO:0004175: endopeptidase activity	6.93E-03
65	GO:0005217: intracellular ligand-gated ion channel activity	7.50E-03
66	GO:0003712: transcription cofactor activity	7.50E-03
67	GO:0004970: ionotropic glutamate receptor activity	7.50E-03
68	GO:0004725: protein tyrosine phosphatase activity	8.10E-03
69	GO:0051536: iron-sulfur cluster binding	8.70E-03
70	GO:0031418: L-ascorbic acid binding	8.70E-03
71	GO:0004298: threonine-type endopeptidase activity	9.97E-03
72	GO:0008408: 3'-5' exonuclease activity	9.97E-03
73	GO:0003756: protein disulfide isomerase activity	1.20E-02
74	GO:0005102: receptor binding	1.27E-02
75	GO:0044212: transcription regulatory region DNA binding	1.37E-02
76	GO:0004527: exonuclease activity	1.41E-02
77	GO:0050662: coenzyme binding	1.49E-02
78	GO:0004872: receptor activity	1.56E-02
79	GO:0051213: dioxygenase activity	2.13E-02
80	GO:0004806: triglyceride lipase activity	2.39E-02
81	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.57E-02
82	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.74E-02
83	GO:0003746: translation elongation factor activity	3.05E-02
84	GO:0005507: copper ion binding	3.06E-02
85	GO:0000149: SNARE binding	3.24E-02
86	GO:0051539: 4 iron, 4 sulfur cluster binding	3.34E-02
87	GO:0042393: histone binding	3.34E-02
88	GO:0004364: glutathione transferase activity	3.55E-02
89	GO:0005484: SNAP receptor activity	3.65E-02
90	GO:0042803: protein homodimerization activity	3.69E-02
91	GO:0051287: NAD binding	4.18E-02

Rank	GO Term	Adjusted P value
1	GO:0005789: endoplasmic reticulum membrane	4.13E-06
2	GO:0005801: cis-Golgi network	7.27E-05
3	GO:0030134: ER to Golgi transport vesicle	3.78E-04
4	GO:0000814: ESCRT II complex	3.78E-04
5	GO:0030132: clathrin coat of coated pit	6.19E-04
6	GO:0030130: clathrin coat of trans-Golgi network vesicle	6.19E-04
7	GO:0030658: transport vesicle membrane	8.83E-04
8	GO:0016021: integral component of membrane	1.44E-03
9	GO:0005945: 6-phosphofructokinase complex	1.48E-03
10	GO:0005885: Arp2/3 protein complex	2.19E-03
11	GO:0005829: cytosol	2.20E-03
12	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.58E-03
13	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.41E-03
14	GO:0005811: lipid particle	3.41E-03
15	GO:0031901: early endosome membrane	3.86E-03
16	GO:0031902: late endosome membrane	4.26E-03
17	GO:0030665: clathrin-coated vesicle membrane	4.33E-03
18	GO:0008540: proteasome regulatory particle, base subcomplex	4.33E-03
19	GO:0017119: Golgi transport complex	4.81E-03
20	GO:0008541: proteasome regulatory particle, lid subcomplex	5.32E-03
21	GO:0000502: proteasome complex	6.21E-03
22	GO:0005783: endoplasmic reticulum	6.39E-03
23	GO:0005769: early endosome	8.10E-03
24	GO:0005743: mitochondrial inner membrane	8.67E-03
25	GO:0005839: proteasome core complex	9.97E-03
26	GO:0005623: cell	1.14E-02
27	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.20E-02
28	GO:0005737: cytoplasm	1.26E-02
29	GO:0005770: late endosome	1.41E-02
30	GO:0031965: nuclear membrane	1.56E-02
31	GO:0019898: extrinsic component of membrane	1.56E-02
32	GO:0009504: cell plate	1.56E-02
33	GO:0016592: mediator complex	1.72E-02
34	GO:0032580: Golgi cisterna membrane	1.88E-02
35	GO:0005788: endoplasmic reticulum lumen	2.22E-02
36	GO:0031225: anchored component of membrane	3.43E-02
37	GO:0031201: SNARE complex	3.44E-02
38	GO:0005768: endosome	4.15E-02