co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G39830

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0042407: cristae formation	0.00E+00
4	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
5	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
6	GO:0061157: mRNA destabilization	0.00E+00
7	GO:0002184: cytoplasmic translational termination	0.00E+00
8	GO:0043392: negative regulation of DNA binding	0.00E+00
9	GO:0006849: plasma membrane pyruvate transport	0.00E+00
10	GO:0005983: starch catabolic process	1.48E-05
11	GO:2000033: regulation of seed dormancy process	8.69E-05
12	GO:0048437: floral organ development	1.15E-04
13	GO:0005980: glycogen catabolic process	1.86E-04
14	GO:0030198: extracellular matrix organization	1.86E-04
15	GO:0046520: sphingoid biosynthetic process	1.86E-04
16	GO:0010480: microsporocyte differentiation	1.86E-04
17	GO:0043007: maintenance of rDNA	1.86E-04
18	GO:0015904: tetracycline transport	1.86E-04
19	GO:0005991: trehalose metabolic process	1.86E-04
20	GO:0006747: FAD biosynthetic process	1.86E-04
21	GO:0000023: maltose metabolic process	1.86E-04
22	GO:0000025: maltose catabolic process	1.86E-04
23	GO:0006783: heme biosynthetic process	2.25E-04
24	GO:0015995: chlorophyll biosynthetic process	3.22E-04
25	GO:0006423: cysteinyl-tRNA aminoacylation	4.19E-04
26	GO:0009629: response to gravity	4.19E-04
27	GO:0019388: galactose catabolic process	4.19E-04
28	GO:0007154: cell communication	4.19E-04
29	GO:0071497: cellular response to freezing	4.19E-04
30	GO:0090342: regulation of cell aging	4.19E-04
31	GO:0006568: tryptophan metabolic process	4.19E-04
32	GO:0071452: cellular response to singlet oxygen	4.19E-04
33	GO:2000012: regulation of auxin polar transport	4.78E-04
34	GO:0006006: glucose metabolic process	4.78E-04
35	GO:0009640: photomorphogenesis	6.89E-04
36	GO:0010731: protein glutathionylation	9.77E-04
37	GO:0046739: transport of virus in multicellular host	9.77E-04
38	GO:0009590: detection of gravity	9.77E-04
39	GO:0010321: regulation of vegetative phase change	9.77E-04
40	GO:0010601: positive regulation of auxin biosynthetic process	9.77E-04
41	GO:0009658: chloroplast organization	9.99E-04
42	GO:0006857: oligopeptide transport	1.08E-03
43	GO:0009735: response to cytokinin	1.21E-03
44	GO:1902347: response to strigolactone	1.29E-03
45	GO:0042938: dipeptide transport	1.29E-03
46	GO:0006808: regulation of nitrogen utilization	1.29E-03
47	GO:1901141: regulation of lignin biosynthetic process	1.29E-03
48	GO:0022622: root system development	1.29E-03
49	GO:0010182: sugar mediated signaling pathway	1.44E-03
50	GO:0009741: response to brassinosteroid	1.44E-03
51	GO:0019252: starch biosynthetic process	1.65E-03
52	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.03E-03
53	GO:0060918: auxin transport	2.03E-03
54	GO:0010405: arabinogalactan protein metabolic process	2.03E-03
55	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.03E-03
56	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.03E-03
57	GO:0009959: negative gravitropism	2.03E-03
58	GO:0000470: maturation of LSU-rRNA	2.03E-03
59	GO:0042026: protein refolding	2.43E-03
60	GO:0006458: 'de novo' protein folding	2.43E-03
61	GO:0048509: regulation of meristem development	2.43E-03
62	GO:0030488: tRNA methylation	2.43E-03
63	GO:0010310: regulation of hydrogen peroxide metabolic process	2.43E-03
64	GO:0009607: response to biotic stimulus	2.69E-03
65	GO:0006633: fatty acid biosynthetic process	2.74E-03
66	GO:0010098: suspensor development	2.87E-03
67	GO:0032880: regulation of protein localization	2.87E-03
68	GO:0010161: red light signaling pathway	2.87E-03
69	GO:0042255: ribosome assembly	3.32E-03
70	GO:0046620: regulation of organ growth	3.32E-03
71	GO:0006353: DNA-templated transcription, termination	3.32E-03
72	GO:0070413: trehalose metabolism in response to stress	3.32E-03
73	GO:0009231: riboflavin biosynthetic process	3.32E-03
74	GO:0048564: photosystem I assembly	3.32E-03
75	GO:0005978: glycogen biosynthetic process	3.32E-03
76	GO:0000160: phosphorelay signal transduction system	3.47E-03
77	GO:0010497: plasmodesmata-mediated intercellular transport	3.80E-03
78	GO:0010100: negative regulation of photomorphogenesis	3.80E-03
79	GO:0032544: plastid translation	3.80E-03
80	GO:0010099: regulation of photomorphogenesis	3.80E-03
81	GO:0010206: photosystem II repair	4.30E-03
82	GO:1900865: chloroplast RNA modification	4.82E-03
83	GO:0031425: chloroplast RNA processing	4.82E-03
84	GO:0010205: photoinhibition	4.82E-03
85	GO:0009638: phototropism	4.82E-03
86	GO:0043067: regulation of programmed cell death	4.82E-03
87	GO:0006631: fatty acid metabolic process	4.97E-03
88	GO:0006782: protoporphyrinogen IX biosynthetic process	5.36E-03
89	GO:0010629: negative regulation of gene expression	5.36E-03
90	GO:0010162: seed dormancy process	5.36E-03
91	GO:0009773: photosynthetic electron transport in photosystem I	5.92E-03
92	GO:0009073: aromatic amino acid family biosynthetic process	5.92E-03
93	GO:0048229: gametophyte development	5.92E-03
94	GO:0010015: root morphogenesis	5.92E-03
95	GO:0000038: very long-chain fatty acid metabolic process	5.92E-03
96	GO:0006855: drug transmembrane transport	6.28E-03
97	GO:0015706: nitrate transport	6.51E-03
98	GO:0010102: lateral root morphogenesis	7.11E-03
99	GO:0010075: regulation of meristem growth	7.11E-03
100	GO:0009767: photosynthetic electron transport chain	7.11E-03
101	GO:0009736: cytokinin-activated signaling pathway	7.26E-03
102	GO:0010020: chloroplast fission	7.73E-03
103	GO:0009266: response to temperature stimulus	7.73E-03
104	GO:0009934: regulation of meristem structural organization	7.73E-03
105	GO:0009409: response to cold	8.27E-03
106	GO:0006457: protein folding	8.81E-03
107	GO:0010187: negative regulation of seed germination	9.71E-03
108	GO:0005992: trehalose biosynthetic process	9.71E-03
109	GO:0009740: gibberellic acid mediated signaling pathway	9.74E-03
110	GO:0006418: tRNA aminoacylation for protein translation	1.04E-02
111	GO:0048278: vesicle docking	1.11E-02
112	GO:0061077: chaperone-mediated protein folding	1.11E-02
113	GO:0016042: lipid catabolic process	1.12E-02
114	GO:0006730: one-carbon metabolic process	1.19E-02
115	GO:0006508: proteolysis	1.19E-02
116	GO:0031348: negative regulation of defense response	1.19E-02
117	GO:0009686: gibberellin biosynthetic process	1.26E-02
118	GO:0009058: biosynthetic process	1.37E-02
119	GO:0008284: positive regulation of cell proliferation	1.42E-02
120	GO:0042335: cuticle development	1.50E-02
121	GO:0010051: xylem and phloem pattern formation	1.50E-02
122	GO:0048653: anther development	1.50E-02
123	GO:0009790: embryo development	1.52E-02
124	GO:0009958: positive gravitropism	1.58E-02
125	GO:0010197: polar nucleus fusion	1.58E-02
126	GO:0009960: endosperm development	1.58E-02
127	GO:0061025: membrane fusion	1.66E-02
128	GO:0006814: sodium ion transport	1.66E-02
129	GO:0009556: microsporogenesis	1.75E-02
130	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.83E-02
131	GO:0071554: cell wall organization or biogenesis	1.83E-02
132	GO:0009451: RNA modification	1.84E-02
133	GO:0030163: protein catabolic process	2.01E-02
134	GO:1901657: glycosyl compound metabolic process	2.01E-02
135	GO:0010252: auxin homeostasis	2.10E-02
136	GO:0008380: RNA splicing	2.14E-02
137	GO:0010029: regulation of seed germination	2.48E-02
138	GO:0006906: vesicle fusion	2.58E-02
139	GO:0009817: defense response to fungus, incompatible interaction	2.88E-02
140	GO:0048481: plant ovule development	2.88E-02
141	GO:0009832: plant-type cell wall biogenesis	2.98E-02
142	GO:0009813: flavonoid biosynthetic process	2.98E-02
143	GO:0009631: cold acclimation	3.19E-02
144	GO:0048527: lateral root development	3.19E-02
145	GO:0005975: carbohydrate metabolic process	3.20E-02
146	GO:0006839: mitochondrial transport	3.74E-02
147	GO:0006887: exocytosis	3.85E-02
148	GO:0015979: photosynthesis	3.93E-02
149	GO:0045892: negative regulation of transcription, DNA-templated	4.18E-02

Rank	GO Term	Adjusted P value
1	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0051060: pullulanase activity	0.00E+00
4	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
5	GO:0047661: amino-acid racemase activity	0.00E+00
6	GO:0097100: supercoiled DNA binding	0.00E+00
7	GO:0005201: extracellular matrix structural constituent	0.00E+00
8	GO:0005363: maltose transmembrane transporter activity	0.00E+00
9	GO:0010303: limit dextrinase activity	0.00E+00
10	GO:0004853: uroporphyrinogen decarboxylase activity	1.86E-04
11	GO:0010313: phytochrome binding	1.86E-04
12	GO:0004134: 4-alpha-glucanotransferase activity	1.86E-04
13	GO:0004645: phosphorylase activity	1.86E-04
14	GO:0009374: biotin binding	1.86E-04
15	GO:0000170: sphingosine hydroxylase activity	1.86E-04
16	GO:0050139: nicotinate-N-glucosyltransferase activity	1.86E-04
17	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.86E-04
18	GO:0008184: glycogen phosphorylase activity	1.86E-04
19	GO:0003919: FMN adenylyltransferase activity	4.19E-04
20	GO:0042284: sphingolipid delta-4 desaturase activity	4.19E-04
21	GO:0008493: tetracycline transporter activity	4.19E-04
22	GO:0016630: protochlorophyllide reductase activity	4.19E-04
23	GO:0004614: phosphoglucomutase activity	4.19E-04
24	GO:0004817: cysteine-tRNA ligase activity	4.19E-04
25	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.19E-04
26	GO:0005215: transporter activity	4.31E-04
27	GO:0002161: aminoacyl-tRNA editing activity	6.84E-04
28	GO:0050833: pyruvate transmembrane transporter activity	6.84E-04
29	GO:0005504: fatty acid binding	6.84E-04
30	GO:0045174: glutathione dehydrogenase (ascorbate) activity	6.84E-04
31	GO:0070330: aromatase activity	6.84E-04
32	GO:0017150: tRNA dihydrouridine synthase activity	6.84E-04
33	GO:0043023: ribosomal large subunit binding	9.77E-04
34	GO:0008508: bile acid:sodium symporter activity	9.77E-04
35	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	9.77E-04
36	GO:0003727: single-stranded RNA binding	1.15E-03
37	GO:0045430: chalcone isomerase activity	1.29E-03
38	GO:0042936: dipeptide transporter activity	1.29E-03
39	GO:0003959: NADPH dehydrogenase activity	1.65E-03
40	GO:0018685: alkane 1-monooxygenase activity	1.65E-03
41	GO:0003989: acetyl-CoA carboxylase activity	1.65E-03
42	GO:0000156: phosphorelay response regulator activity	2.01E-03
43	GO:0004556: alpha-amylase activity	2.03E-03
44	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.03E-03
45	GO:0004629: phospholipase C activity	2.03E-03
46	GO:0008237: metallopeptidase activity	2.27E-03
47	GO:0004435: phosphatidylinositol phospholipase C activity	2.43E-03
48	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.43E-03
49	GO:0015238: drug transmembrane transporter activity	3.47E-03
50	GO:0004222: metalloendopeptidase activity	3.64E-03
51	GO:0008173: RNA methyltransferase activity	3.80E-03
52	GO:0003824: catalytic activity	5.74E-03
53	GO:0044183: protein binding involved in protein folding	5.92E-03
54	GO:0047372: acylglycerol lipase activity	5.92E-03
55	GO:0000049: tRNA binding	6.51E-03
56	GO:0004089: carbonate dehydratase activity	7.11E-03
57	GO:0031072: heat shock protein binding	7.11E-03
58	GO:0016298: lipase activity	7.51E-03
59	GO:0008083: growth factor activity	7.73E-03
60	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	9.03E-03
61	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	9.03E-03
62	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	9.03E-03
63	GO:0051082: unfolded protein binding	1.03E-02
64	GO:0004707: MAP kinase activity	1.11E-02
65	GO:0004176: ATP-dependent peptidase activity	1.11E-02
66	GO:0033612: receptor serine/threonine kinase binding	1.11E-02
67	GO:0004519: endonuclease activity	1.29E-02
68	GO:0019843: rRNA binding	1.30E-02
69	GO:0004812: aminoacyl-tRNA ligase activity	1.42E-02
70	GO:0001085: RNA polymerase II transcription factor binding	1.58E-02
71	GO:0015297: antiporter activity	1.71E-02
72	GO:0016791: phosphatase activity	2.10E-02
73	GO:0016413: O-acetyltransferase activity	2.29E-02
74	GO:0102483: scopolin beta-glucosidase activity	2.67E-02
75	GO:0000287: magnesium ion binding	2.73E-02
76	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.19E-02
77	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.40E-02
78	GO:0008422: beta-glucosidase activity	3.63E-02
79	GO:0000149: SNARE binding	3.63E-02
80	GO:0042393: histone binding	3.74E-02
81	GO:0004364: glutathione transferase activity	3.96E-02
82	GO:0005484: SNAP receptor activity	4.08E-02
83	GO:0035091: phosphatidylinositol binding	4.31E-02
84	GO:0004871: signal transducer activity	4.31E-02
85	GO:0043621: protein self-association	4.31E-02
86	GO:0005198: structural molecule activity	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.20E-12
2	GO:0009570: chloroplast stroma	8.38E-12
3	GO:0009941: chloroplast envelope	1.06E-06
4	GO:0009534: chloroplast thylakoid	1.31E-05
5	GO:0009317: acetyl-CoA carboxylase complex	6.84E-04
6	GO:0009544: chloroplast ATP synthase complex	1.29E-03
7	GO:0009535: chloroplast thylakoid membrane	2.04E-03
8	GO:0009840: chloroplastic endopeptidase Clp complex	2.43E-03
9	GO:0009501: amyloplast	3.32E-03
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.30E-03
11	GO:0090404: pollen tube tip	5.92E-03
12	GO:0031969: chloroplast membrane	7.07E-03
13	GO:0009706: chloroplast inner membrane	1.03E-02
14	GO:0009654: photosystem II oxygen evolving complex	1.04E-02
15	GO:0009532: plastid stroma	1.11E-02
16	GO:0005770: late endosome	1.58E-02
17	GO:0019898: extrinsic component of membrane	1.75E-02
18	GO:0010319: stromule	2.19E-02
19	GO:0009536: plastid	2.34E-02
20	GO:0005667: transcription factor complex	2.58E-02
21	GO:0031902: late endosome membrane	3.85E-02
22	GO:0031201: SNARE complex	3.85E-02