co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G39310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090706: specification of plant organ position	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0017038: protein import	0.00E+00
6	GO:0046620: regulation of organ growth	4.19E-08
7	GO:0009733: response to auxin	1.88E-07
8	GO:0009734: auxin-activated signaling pathway	1.21E-06
9	GO:1900865: chloroplast RNA modification	1.29E-05
10	GO:0040008: regulation of growth	1.35E-05
11	GO:0016556: mRNA modification	2.27E-05
12	GO:2000012: regulation of auxin polar transport	3.40E-05
13	GO:0009765: photosynthesis, light harvesting	4.12E-05
14	GO:0007275: multicellular organism development	9.50E-05
15	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.23E-04
16	GO:0009926: auxin polar transport	1.34E-04
17	GO:1904966: positive regulation of vitamin E biosynthetic process	2.43E-04
18	GO:0010480: microsporocyte differentiation	2.43E-04
19	GO:1904964: positive regulation of phytol biosynthetic process	2.43E-04
20	GO:0042759: long-chain fatty acid biosynthetic process	2.43E-04
21	GO:0042371: vitamin K biosynthetic process	2.43E-04
22	GO:0051247: positive regulation of protein metabolic process	2.43E-04
23	GO:1902458: positive regulation of stomatal opening	2.43E-04
24	GO:0015904: tetracycline transport	2.43E-04
25	GO:2000905: negative regulation of starch metabolic process	2.43E-04
26	GO:0010450: inflorescence meristem growth	2.43E-04
27	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	2.43E-04
28	GO:0070509: calcium ion import	2.43E-04
29	GO:0009828: plant-type cell wall loosening	3.38E-04
30	GO:0009638: phototropism	3.94E-04
31	GO:0015995: chlorophyll biosynthetic process	5.26E-04
32	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.39E-04
33	GO:2000123: positive regulation of stomatal complex development	5.39E-04
34	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.39E-04
35	GO:1900871: chloroplast mRNA modification	5.39E-04
36	GO:1901959: positive regulation of cutin biosynthetic process	5.39E-04
37	GO:0015979: photosynthesis	6.49E-04
38	GO:0070588: calcium ion transmembrane transport	8.68E-04
39	GO:0045165: cell fate commitment	8.75E-04
40	GO:1902448: positive regulation of shade avoidance	8.75E-04
41	GO:1904278: positive regulation of wax biosynthetic process	8.75E-04
42	GO:0048586: regulation of long-day photoperiodism, flowering	8.75E-04
43	GO:0043572: plastid fission	1.25E-03
44	GO:2001141: regulation of RNA biosynthetic process	1.25E-03
45	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.25E-03
46	GO:0007231: osmosensory signaling pathway	1.25E-03
47	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.25E-03
48	GO:0046739: transport of virus in multicellular host	1.25E-03
49	GO:0061077: chaperone-mediated protein folding	1.28E-03
50	GO:0009664: plant-type cell wall organization	1.47E-03
51	GO:0010109: regulation of photosynthesis	1.67E-03
52	GO:2000306: positive regulation of photomorphogenesis	1.67E-03
53	GO:0006109: regulation of carbohydrate metabolic process	1.67E-03
54	GO:0022622: root system development	1.67E-03
55	GO:0045723: positive regulation of fatty acid biosynthetic process	1.67E-03
56	GO:0033500: carbohydrate homeostasis	1.67E-03
57	GO:2000038: regulation of stomatal complex development	1.67E-03
58	GO:0009826: unidimensional cell growth	1.68E-03
59	GO:0010236: plastoquinone biosynthetic process	2.13E-03
60	GO:0045038: protein import into chloroplast thylakoid membrane	2.13E-03
61	GO:1902183: regulation of shoot apical meristem development	2.13E-03
62	GO:0016123: xanthophyll biosynthetic process	2.13E-03
63	GO:0010158: abaxial cell fate specification	2.13E-03
64	GO:0010375: stomatal complex patterning	2.13E-03
65	GO:0016120: carotene biosynthetic process	2.13E-03
66	GO:0000304: response to singlet oxygen	2.13E-03
67	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.60E-03
68	GO:0016554: cytidine to uridine editing	2.62E-03
69	GO:0032973: amino acid export	2.62E-03
70	GO:0000741: karyogamy	2.62E-03
71	GO:0006655: phosphatidylglycerol biosynthetic process	2.62E-03
72	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.62E-03
73	GO:0080086: stamen filament development	3.15E-03
74	GO:0042026: protein refolding	3.15E-03
75	GO:0042372: phylloquinone biosynthetic process	3.15E-03
76	GO:0006458: 'de novo' protein folding	3.15E-03
77	GO:0017148: negative regulation of translation	3.15E-03
78	GO:0007267: cell-cell signaling	3.31E-03
79	GO:0010027: thylakoid membrane organization	3.71E-03
80	GO:0030307: positive regulation of cell growth	3.72E-03
81	GO:0032880: regulation of protein localization	3.72E-03
82	GO:0048528: post-embryonic root development	3.72E-03
83	GO:0009772: photosynthetic electron transport in photosystem II	3.72E-03
84	GO:0043090: amino acid import	3.72E-03
85	GO:0048437: floral organ development	3.72E-03
86	GO:0010444: guard mother cell differentiation	3.72E-03
87	GO:0016042: lipid catabolic process	4.28E-03
88	GO:0006605: protein targeting	4.31E-03
89	GO:2000070: regulation of response to water deprivation	4.31E-03
90	GO:0010093: specification of floral organ identity	4.93E-03
91	GO:0071482: cellular response to light stimulus	4.93E-03
92	GO:0015996: chlorophyll catabolic process	4.93E-03
93	GO:0007186: G-protein coupled receptor signaling pathway	4.93E-03
94	GO:0010497: plasmodesmata-mediated intercellular transport	4.93E-03
95	GO:0009657: plastid organization	4.93E-03
96	GO:0080144: amino acid homeostasis	5.59E-03
97	GO:2000024: regulation of leaf development	5.59E-03
98	GO:0046916: cellular transition metal ion homeostasis	5.59E-03
99	GO:0006779: porphyrin-containing compound biosynthetic process	6.27E-03
100	GO:0031425: chloroplast RNA processing	6.27E-03
101	GO:0006839: mitochondrial transport	6.98E-03
102	GO:0009641: shade avoidance	6.99E-03
103	GO:0006949: syncytium formation	6.99E-03
104	GO:0006782: protoporphyrinogen IX biosynthetic process	6.99E-03
105	GO:0009299: mRNA transcription	6.99E-03
106	GO:0006352: DNA-templated transcription, initiation	7.73E-03
107	GO:0048229: gametophyte development	7.73E-03
108	GO:0006816: calcium ion transport	7.73E-03
109	GO:0009773: photosynthetic electron transport in photosystem I	7.73E-03
110	GO:0006415: translational termination	7.73E-03
111	GO:0019684: photosynthesis, light reaction	7.73E-03
112	GO:0009089: lysine biosynthetic process via diaminopimelate	7.73E-03
113	GO:0009073: aromatic amino acid family biosynthetic process	7.73E-03
114	GO:0043085: positive regulation of catalytic activity	7.73E-03
115	GO:0016024: CDP-diacylglycerol biosynthetic process	8.49E-03
116	GO:0045037: protein import into chloroplast stroma	8.49E-03
117	GO:0009658: chloroplast organization	8.77E-03
118	GO:0050826: response to freezing	9.29E-03
119	GO:0010075: regulation of meristem growth	9.29E-03
120	GO:0009725: response to hormone	9.29E-03
121	GO:0009785: blue light signaling pathway	9.29E-03
122	GO:0010628: positive regulation of gene expression	9.29E-03
123	GO:0009887: animal organ morphogenesis	1.01E-02
124	GO:0009934: regulation of meristem structural organization	1.01E-02
125	GO:0010020: chloroplast fission	1.01E-02
126	GO:0009933: meristem structural organization	1.01E-02
127	GO:0010207: photosystem II assembly	1.01E-02
128	GO:0010030: positive regulation of seed germination	1.10E-02
129	GO:0009909: regulation of flower development	1.18E-02
130	GO:0010025: wax biosynthetic process	1.18E-02
131	GO:0009944: polarity specification of adaxial/abaxial axis	1.27E-02
132	GO:0009740: gibberellic acid mediated signaling pathway	1.43E-02
133	GO:0048511: rhythmic process	1.46E-02
134	GO:0031408: oxylipin biosynthetic process	1.46E-02
135	GO:0006730: one-carbon metabolic process	1.56E-02
136	GO:0009742: brassinosteroid mediated signaling pathway	1.62E-02
137	GO:0019722: calcium-mediated signaling	1.76E-02
138	GO:0009561: megagametogenesis	1.76E-02
139	GO:0006810: transport	1.85E-02
140	GO:0016117: carotenoid biosynthetic process	1.86E-02
141	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.86E-02
142	GO:0008284: positive regulation of cell proliferation	1.86E-02
143	GO:0080022: primary root development	1.97E-02
144	GO:0048653: anther development	1.97E-02
145	GO:0042631: cellular response to water deprivation	1.97E-02
146	GO:0006397: mRNA processing	1.99E-02
147	GO:0006662: glycerol ether metabolic process	2.07E-02
148	GO:0010197: polar nucleus fusion	2.07E-02
149	GO:0010182: sugar mediated signaling pathway	2.07E-02
150	GO:0010154: fruit development	2.07E-02
151	GO:0009958: positive gravitropism	2.07E-02
152	GO:0048544: recognition of pollen	2.18E-02
153	GO:0042752: regulation of circadian rhythm	2.18E-02
154	GO:0009646: response to absence of light	2.18E-02
155	GO:0009851: auxin biosynthetic process	2.29E-02
156	GO:0032502: developmental process	2.52E-02
157	GO:0010583: response to cyclopentenone	2.52E-02
158	GO:0016032: viral process	2.52E-02
159	GO:0010090: trichome morphogenesis	2.64E-02
160	GO:0006464: cellular protein modification process	2.76E-02
161	GO:0010029: regulation of seed germination	3.26E-02
162	GO:0007165: signal transduction	3.33E-02
163	GO:0009627: systemic acquired resistance	3.39E-02
164	GO:0018298: protein-chromophore linkage	3.78E-02
165	GO:0009813: flavonoid biosynthetic process	3.92E-02
166	GO:0006499: N-terminal protein myristoylation	4.05E-02
167	GO:0009407: toxin catabolic process	4.05E-02
168	GO:0048527: lateral root development	4.19E-02
169	GO:0045087: innate immune response	4.48E-02
170	GO:0034599: cellular response to oxidative stress	4.62E-02
171	GO:0030001: metal ion transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.43E-04
4	GO:0050139: nicotinate-N-glucosyltransferase activity	2.43E-04
5	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.43E-04
6	GO:0017118: lipoyltransferase activity	5.39E-04
7	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.39E-04
8	GO:0043425: bHLH transcription factor binding	5.39E-04
9	GO:0008493: tetracycline transporter activity	5.39E-04
10	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.39E-04
11	GO:0005262: calcium channel activity	6.91E-04
12	GO:0015462: ATPase-coupled protein transmembrane transporter activity	8.75E-04
13	GO:0005504: fatty acid binding	8.75E-04
14	GO:0005528: FK506 binding	1.06E-03
15	GO:0043023: ribosomal large subunit binding	1.25E-03
16	GO:0016851: magnesium chelatase activity	1.25E-03
17	GO:0016149: translation release factor activity, codon specific	1.25E-03
18	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.67E-03
19	GO:0004659: prenyltransferase activity	1.67E-03
20	GO:0001053: plastid sigma factor activity	1.67E-03
21	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.67E-03
22	GO:0016987: sigma factor activity	1.67E-03
23	GO:0043495: protein anchor	1.67E-03
24	GO:0045430: chalcone isomerase activity	1.67E-03
25	GO:0016788: hydrolase activity, acting on ester bonds	1.83E-03
26	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.13E-03
27	GO:0004462: lactoylglutathione lyase activity	2.62E-03
28	GO:0052689: carboxylic ester hydrolase activity	2.88E-03
29	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.15E-03
30	GO:0019899: enzyme binding	3.72E-03
31	GO:0046914: transition metal ion binding	4.93E-03
32	GO:0003747: translation release factor activity	5.59E-03
33	GO:0008047: enzyme activator activity	6.99E-03
34	GO:0044183: protein binding involved in protein folding	7.73E-03
35	GO:0008378: galactosyltransferase activity	8.49E-03
36	GO:0000976: transcription regulatory region sequence-specific DNA binding	8.49E-03
37	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.23E-03
38	GO:0031072: heat shock protein binding	9.29E-03
39	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.01E-02
40	GO:0008083: growth factor activity	1.01E-02
41	GO:0008266: poly(U) RNA binding	1.01E-02
42	GO:0008146: sulfotransferase activity	1.10E-02
43	GO:0004857: enzyme inhibitor activity	1.27E-02
44	GO:0005345: purine nucleobase transmembrane transporter activity	1.37E-02
45	GO:0004176: ATP-dependent peptidase activity	1.46E-02
46	GO:0033612: receptor serine/threonine kinase binding	1.46E-02
47	GO:0051082: unfolded protein binding	1.52E-02
48	GO:0004871: signal transducer activity	1.54E-02
49	GO:0046983: protein dimerization activity	1.57E-02
50	GO:0022891: substrate-specific transmembrane transporter activity	1.66E-02
51	GO:0030570: pectate lyase activity	1.66E-02
52	GO:0047134: protein-disulfide reductase activity	1.86E-02
53	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.96E-02
54	GO:0005199: structural constituent of cell wall	2.07E-02
55	GO:0004519: endonuclease activity	2.10E-02
56	GO:0004791: thioredoxin-disulfide reductase activity	2.18E-02
57	GO:0019901: protein kinase binding	2.29E-02
58	GO:0048038: quinone binding	2.41E-02
59	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.64E-02
60	GO:0008483: transaminase activity	2.88E-02
61	GO:0008237: metallopeptidase activity	2.88E-02
62	GO:0016597: amino acid binding	3.01E-02
63	GO:0016168: chlorophyll binding	3.26E-02
64	GO:0004222: metalloendopeptidase activity	4.05E-02
65	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.48E-02
66	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.25E-08
2	GO:0009570: chloroplast stroma	8.68E-08
3	GO:0009535: chloroplast thylakoid membrane	3.41E-05
4	GO:0009941: chloroplast envelope	4.16E-05
5	GO:0009579: thylakoid	2.44E-04
6	GO:0010319: stromule	3.66E-04
7	GO:0009543: chloroplast thylakoid lumen	5.66E-04
8	GO:0009528: plastid inner membrane	8.75E-04
9	GO:0019897: extrinsic component of plasma membrane	8.75E-04
10	GO:0010007: magnesium chelatase complex	8.75E-04
11	GO:0009534: chloroplast thylakoid	1.02E-03
12	GO:0009654: photosystem II oxygen evolving complex	1.17E-03
13	GO:0009527: plastid outer membrane	1.67E-03
14	GO:0005886: plasma membrane	1.90E-03
15	GO:0019898: extrinsic component of membrane	2.40E-03
16	GO:0031969: chloroplast membrane	2.47E-03
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.59E-03
18	GO:0090404: pollen tube tip	7.73E-03
19	GO:0000311: plastid large ribosomal subunit	8.49E-03
20	GO:0043234: protein complex	1.18E-02
21	GO:0042651: thylakoid membrane	1.37E-02
22	GO:0009532: plastid stroma	1.46E-02
23	GO:0031225: anchored component of membrane	2.08E-02
24	GO:0009523: photosystem II	2.29E-02
25	GO:0030529: intracellular ribonucleoprotein complex	3.13E-02
26	GO:0048046: apoplast	3.40E-02
27	GO:0046658: anchored component of plasma membrane	3.49E-02
28	GO:0009707: chloroplast outer membrane	3.78E-02
29	GO:0005618: cell wall	3.98E-02
30	GO:0009536: plastid	4.11E-02
31	GO:0015934: large ribosomal subunit	4.19E-02