Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G39090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
2GO:0070212: protein poly-ADP-ribosylation0.00E+00
3GO:1900367: positive regulation of defense response to insect0.00E+00
4GO:0002764: immune response-regulating signaling pathway0.00E+00
5GO:0033587: shikimate biosynthetic process0.00E+00
6GO:0045730: respiratory burst0.00E+00
7GO:0009268: response to pH0.00E+00
8GO:0032499: detection of peptidoglycan0.00E+00
9GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
10GO:0071327: cellular response to trehalose stimulus0.00E+00
11GO:0006468: protein phosphorylation4.45E-09
12GO:0010200: response to chitin1.11E-07
13GO:0080142: regulation of salicylic acid biosynthetic process3.14E-07
14GO:0009697: salicylic acid biosynthetic process7.12E-07
15GO:0042742: defense response to bacterium1.76E-06
16GO:0009626: plant-type hypersensitive response3.27E-06
17GO:0031348: negative regulation of defense response5.26E-06
18GO:0000187: activation of MAPK activity2.67E-05
19GO:0060548: negative regulation of cell death4.83E-05
20GO:0070588: calcium ion transmembrane transport6.15E-05
21GO:0010225: response to UV-C7.68E-05
22GO:0046777: protein autophosphorylation1.38E-04
23GO:2000037: regulation of stomatal complex patterning1.53E-04
24GO:0010365: positive regulation of ethylene biosynthetic process2.68E-04
25GO:0051938: L-glutamate import2.68E-04
26GO:0051245: negative regulation of cellular defense response2.68E-04
27GO:0099132: ATP hydrolysis coupled cation transmembrane transport2.68E-04
28GO:0010941: regulation of cell death2.68E-04
29GO:0010421: hydrogen peroxide-mediated programmed cell death2.68E-04
30GO:0007229: integrin-mediated signaling pathway2.68E-04
31GO:0010045: response to nickel cation2.68E-04
32GO:0019673: GDP-mannose metabolic process2.68E-04
33GO:1901183: positive regulation of camalexin biosynthetic process2.68E-04
34GO:0032491: detection of molecule of fungal origin2.68E-04
35GO:0009620: response to fungus4.28E-04
36GO:0010042: response to manganese ion5.89E-04
37GO:0002221: pattern recognition receptor signaling pathway5.89E-04
38GO:0043091: L-arginine import5.89E-04
39GO:0080151: positive regulation of salicylic acid mediated signaling pathway5.89E-04
40GO:0015802: basic amino acid transport5.89E-04
41GO:0010618: aerenchyma formation5.89E-04
42GO:0010229: inflorescence development7.86E-04
43GO:0055046: microgametogenesis7.86E-04
44GO:0034605: cellular response to heat8.84E-04
45GO:0002237: response to molecule of bacterial origin8.84E-04
46GO:0048281: inflorescence morphogenesis9.55E-04
47GO:0010498: proteasomal protein catabolic process9.55E-04
48GO:0010581: regulation of starch biosynthetic process9.55E-04
49GO:0016045: detection of bacterium9.55E-04
50GO:0034051: negative regulation of plant-type hypersensitive response9.55E-04
51GO:1900140: regulation of seedling development9.55E-04
52GO:0010359: regulation of anion channel activity9.55E-04
53GO:0042351: 'de novo' GDP-L-fucose biosynthetic process9.55E-04
54GO:0051176: positive regulation of sulfur metabolic process9.55E-04
55GO:0035556: intracellular signal transduction1.02E-03
56GO:0010150: leaf senescence1.13E-03
57GO:0006952: defense response1.18E-03
58GO:0072334: UDP-galactose transmembrane transport1.36E-03
59GO:0009399: nitrogen fixation1.36E-03
60GO:0072583: clathrin-dependent endocytosis1.36E-03
61GO:0010306: rhamnogalacturonan II biosynthetic process1.36E-03
62GO:0006612: protein targeting to membrane1.36E-03
63GO:0002679: respiratory burst involved in defense response1.36E-03
64GO:0071323: cellular response to chitin1.36E-03
65GO:0046836: glycolipid transport1.36E-03
66GO:0048194: Golgi vesicle budding1.36E-03
67GO:0006470: protein dephosphorylation1.38E-03
68GO:0009617: response to bacterium1.47E-03
69GO:0009814: defense response, incompatible interaction1.60E-03
70GO:0016226: iron-sulfur cluster assembly1.60E-03
71GO:0010227: floral organ abscission1.74E-03
72GO:0010483: pollen tube reception1.83E-03
73GO:0010363: regulation of plant-type hypersensitive response1.83E-03
74GO:0010107: potassium ion import1.83E-03
75GO:0071219: cellular response to molecule of bacterial origin1.83E-03
76GO:2000038: regulation of stomatal complex development1.83E-03
77GO:0006542: glutamine biosynthetic process1.83E-03
78GO:0046345: abscisic acid catabolic process1.83E-03
79GO:0007165: signal transduction1.85E-03
80GO:0006486: protein glycosylation1.91E-03
81GO:0010118: stomatal movement2.21E-03
82GO:0032957: inositol trisphosphate metabolic process2.33E-03
83GO:0018258: protein O-linked glycosylation via hydroxyproline2.88E-03
84GO:1900425: negative regulation of defense response to bacterium2.88E-03
85GO:0046855: inositol phosphate dephosphorylation2.88E-03
86GO:0010942: positive regulation of cell death2.88E-03
87GO:0010405: arabinogalactan protein metabolic process2.88E-03
88GO:0009742: brassinosteroid mediated signaling pathway3.21E-03
89GO:0009738: abscisic acid-activated signaling pathway3.34E-03
90GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.46E-03
91GO:0042372: phylloquinone biosynthetic process3.46E-03
92GO:0009423: chorismate biosynthetic process3.46E-03
93GO:0010310: regulation of hydrogen peroxide metabolic process3.46E-03
94GO:1900056: negative regulation of leaf senescence4.08E-03
95GO:0070370: cellular heat acclimation4.08E-03
96GO:0010038: response to metal ion4.08E-03
97GO:0010161: red light signaling pathway4.08E-03
98GO:0098869: cellular oxidant detoxification4.08E-03
99GO:0046470: phosphatidylcholine metabolic process4.08E-03
100GO:0001666: response to hypoxia4.25E-03
101GO:0050832: defense response to fungus4.31E-03
102GO:0009816: defense response to bacterium, incompatible interaction4.49E-03
103GO:0030091: protein repair4.73E-03
104GO:0009627: systemic acquired resistance4.74E-03
105GO:0009751: response to salicylic acid5.38E-03
106GO:0010204: defense response signaling pathway, resistance gene-independent5.42E-03
107GO:0009808: lignin metabolic process5.42E-03
108GO:2000031: regulation of salicylic acid mediated signaling pathway5.42E-03
109GO:0010099: regulation of photomorphogenesis5.42E-03
110GO:0009051: pentose-phosphate shunt, oxidative branch6.14E-03
111GO:0006098: pentose-phosphate shunt6.14E-03
112GO:0051865: protein autoubiquitination6.14E-03
113GO:0090333: regulation of stomatal closure6.14E-03
114GO:0010112: regulation of systemic acquired resistance6.14E-03
115GO:0048354: mucilage biosynthetic process involved in seed coat development6.90E-03
116GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.90E-03
117GO:1900426: positive regulation of defense response to bacterium6.90E-03
118GO:0009867: jasmonic acid mediated signaling pathway7.02E-03
119GO:0045087: innate immune response7.02E-03
120GO:0009870: defense response signaling pathway, resistance gene-dependent7.68E-03
121GO:0043069: negative regulation of programmed cell death7.68E-03
122GO:0006887: exocytosis8.35E-03
123GO:0009073: aromatic amino acid family biosynthetic process8.50E-03
124GO:0046856: phosphatidylinositol dephosphorylation8.50E-03
125GO:0051707: response to other organism9.06E-03
126GO:0008361: regulation of cell size9.35E-03
127GO:0012501: programmed cell death9.35E-03
128GO:0002213: defense response to insect9.35E-03
129GO:0010105: negative regulation of ethylene-activated signaling pathway9.35E-03
130GO:0006006: glucose metabolic process1.02E-02
131GO:0018107: peptidyl-threonine phosphorylation1.02E-02
132GO:0006855: drug transmembrane transport1.06E-02
133GO:0000165: MAPK cascade1.10E-02
134GO:0006970: response to osmotic stress1.15E-02
135GO:0009969: xyloglucan biosynthetic process1.21E-02
136GO:0090351: seedling development1.21E-02
137GO:0046854: phosphatidylinositol phosphorylation1.21E-02
138GO:0009809: lignin biosynthetic process1.22E-02
139GO:0006979: response to oxidative stress1.23E-02
140GO:0009863: salicylic acid mediated signaling pathway1.40E-02
141GO:0006487: protein N-linked glycosylation1.40E-02
142GO:0009695: jasmonic acid biosynthetic process1.50E-02
143GO:0009651: response to salt stress1.51E-02
144GO:0048278: vesicle docking1.61E-02
145GO:0003333: amino acid transmembrane transport1.61E-02
146GO:0048511: rhythmic process1.61E-02
147GO:2000022: regulation of jasmonic acid mediated signaling pathway1.71E-02
148GO:0071456: cellular response to hypoxia1.71E-02
149GO:0018105: peptidyl-serine phosphorylation1.80E-02
150GO:0009625: response to insect1.82E-02
151GO:0019722: calcium-mediated signaling1.94E-02
152GO:0009561: megagametogenesis1.94E-02
153GO:0009409: response to cold2.03E-02
154GO:0070417: cellular response to cold2.05E-02
155GO:0016042: lipid catabolic process2.17E-02
156GO:0071472: cellular response to salt stress2.29E-02
157GO:0009845: seed germination2.37E-02
158GO:0061025: membrane fusion2.41E-02
159GO:0008654: phospholipid biosynthetic process2.53E-02
160GO:0002229: defense response to oomycetes2.65E-02
161GO:0010193: response to ozone2.65E-02
162GO:0006891: intra-Golgi vesicle-mediated transport2.65E-02
163GO:0016032: viral process2.78E-02
164GO:0030163: protein catabolic process2.91E-02
165GO:0009873: ethylene-activated signaling pathway3.09E-02
166GO:0006904: vesicle docking involved in exocytosis3.18E-02
167GO:0009911: positive regulation of flower development3.45E-02
168GO:0007166: cell surface receptor signaling pathway3.45E-02
169GO:0042128: nitrate assimilation3.73E-02
170GO:0006906: vesicle fusion3.73E-02
171GO:0048573: photoperiodism, flowering3.88E-02
172GO:0009817: defense response to fungus, incompatible interaction4.17E-02
173GO:0008219: cell death4.17E-02
174GO:0009737: response to abscisic acid4.32E-02
175GO:0009813: flavonoid biosynthetic process4.32E-02
176GO:0009832: plant-type cell wall biogenesis4.32E-02
177GO:0009826: unidimensional cell growth4.49E-02
178GO:0048527: lateral root development4.62E-02
179GO:0010119: regulation of stomatal movement4.62E-02
180GO:0009631: cold acclimation4.62E-02
181GO:0010043: response to zinc ion4.62E-02
182GO:0007568: aging4.62E-02
183GO:0009611: response to wounding4.69E-02
RankGO TermAdjusted P value
1GO:0004107: chorismate synthase activity0.00E+00
2GO:0070191: methionine-R-sulfoxide reductase activity0.00E+00
3GO:2001080: chitosan binding0.00E+00
4GO:0004168: dolichol kinase activity0.00E+00
5GO:0016301: kinase activity1.77E-10
6GO:0004674: protein serine/threonine kinase activity6.51E-10
7GO:0005524: ATP binding2.72E-07
8GO:0005388: calcium-transporting ATPase activity4.22E-05
9GO:0019199: transmembrane receptor protein kinase activity4.83E-05
10GO:0004672: protein kinase activity5.50E-05
11GO:0070696: transmembrane receptor protein serine/threonine kinase binding7.68E-05
12GO:0004012: phospholipid-translocating ATPase activity1.53E-04
13GO:0004708: MAP kinase kinase activity2.55E-04
14GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.68E-04
15GO:0015085: calcium ion transmembrane transporter activity2.68E-04
16GO:0080042: ADP-glucose pyrophosphohydrolase activity2.68E-04
17GO:0008446: GDP-mannose 4,6-dehydratase activity2.68E-04
18GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity2.68E-04
19GO:0008909: isochorismate synthase activity2.68E-04
20GO:0031127: alpha-(1,2)-fucosyltransferase activity2.68E-04
21GO:0032050: clathrin heavy chain binding2.68E-04
22GO:0005515: protein binding3.84E-04
23GO:0043531: ADP binding5.25E-04
24GO:0017110: nucleoside-diphosphatase activity5.89E-04
25GO:0080041: ADP-ribose pyrophosphohydrolase activity5.89E-04
26GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism7.86E-04
27GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity9.55E-04
28GO:0046423: allene-oxide cyclase activity9.55E-04
29GO:0016595: glutamate binding9.55E-04
30GO:0004190: aspartic-type endopeptidase activity9.87E-04
31GO:0043424: protein histidine kinase binding1.33E-03
32GO:0017089: glycolipid transporter activity1.36E-03
33GO:0004445: inositol-polyphosphate 5-phosphatase activity1.36E-03
34GO:0015181: arginine transmembrane transporter activity1.36E-03
35GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.36E-03
36GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity1.36E-03
37GO:0015189: L-lysine transmembrane transporter activity1.36E-03
38GO:0033612: receptor serine/threonine kinase binding1.46E-03
39GO:0005313: L-glutamate transmembrane transporter activity1.83E-03
40GO:0004345: glucose-6-phosphate dehydrogenase activity1.83E-03
41GO:0051861: glycolipid binding1.83E-03
42GO:0010294: abscisic acid glucosyltransferase activity2.33E-03
43GO:0005459: UDP-galactose transmembrane transporter activity2.33E-03
44GO:0047631: ADP-ribose diphosphatase activity2.33E-03
45GO:0004356: glutamate-ammonia ligase activity2.33E-03
46GO:0045431: flavonol synthase activity2.33E-03
47GO:1990714: hydroxyproline O-galactosyltransferase activity2.88E-03
48GO:0000210: NAD+ diphosphatase activity2.88E-03
49GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity2.88E-03
50GO:0035252: UDP-xylosyltransferase activity2.88E-03
51GO:0004605: phosphatidate cytidylyltransferase activity2.88E-03
52GO:0005509: calcium ion binding3.17E-03
53GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.46E-03
54GO:0019900: kinase binding3.46E-03
55GO:0008113: peptide-methionine (S)-S-oxide reductase activity3.46E-03
56GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.78E-03
57GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity4.08E-03
58GO:0004722: protein serine/threonine phosphatase activity4.60E-03
59GO:0052747: sinapyl alcohol dehydrogenase activity4.73E-03
60GO:0004714: transmembrane receptor protein tyrosine kinase activity4.73E-03
61GO:0008375: acetylglucosaminyltransferase activity4.74E-03
62GO:0004806: triglyceride lipase activity5.00E-03
63GO:0008271: secondary active sulfate transmembrane transporter activity5.42E-03
64GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity5.42E-03
65GO:0004430: 1-phosphatidylinositol 4-kinase activity5.42E-03
66GO:0004630: phospholipase D activity5.42E-03
67GO:0004675: transmembrane receptor protein serine/threonine kinase activity5.47E-03
68GO:0015238: drug transmembrane transporter activity5.82E-03
69GO:0008417: fucosyltransferase activity6.14E-03
70GO:0071949: FAD binding6.14E-03
71GO:0016614: oxidoreductase activity, acting on CH-OH group of donors6.40E-03
72GO:0015174: basic amino acid transmembrane transporter activity6.90E-03
73GO:0005516: calmodulin binding7.23E-03
74GO:0008047: enzyme activator activity7.68E-03
75GO:0004713: protein tyrosine kinase activity7.68E-03
76GO:0004568: chitinase activity7.68E-03
77GO:0008559: xenobiotic-transporting ATPase activity8.50E-03
78GO:0008378: galactosyltransferase activity9.35E-03
79GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity9.35E-03
80GO:0045551: cinnamyl-alcohol dehydrogenase activity9.35E-03
81GO:0015116: sulfate transmembrane transporter activity9.35E-03
82GO:0008061: chitin binding1.21E-02
83GO:0016298: lipase activity1.27E-02
84GO:0003954: NADH dehydrogenase activity1.40E-02
85GO:0004707: MAP kinase activity1.61E-02
86GO:0046872: metal ion binding1.95E-02
87GO:0004842: ubiquitin-protein transferase activity2.11E-02
88GO:0010181: FMN binding2.41E-02
89GO:0009055: electron carrier activity2.45E-02
90GO:0019901: protein kinase binding2.53E-02
91GO:0004197: cysteine-type endopeptidase activity2.78E-02
92GO:0015297: antiporter activity2.88E-02
93GO:0043565: sequence-specific DNA binding3.58E-02
94GO:0009931: calcium-dependent protein serine/threonine kinase activity3.73E-02
95GO:0004721: phosphoprotein phosphatase activity3.88E-02
96GO:0004683: calmodulin-dependent protein kinase activity3.88E-02
97GO:0000287: magnesium ion binding4.57E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane1.71E-09
2GO:0031304: intrinsic component of mitochondrial inner membrane5.89E-04
3GO:0005901: caveola5.89E-04
4GO:0030176: integral component of endoplasmic reticulum membrane9.87E-04
5GO:0016021: integral component of membrane2.97E-03
6GO:0030173: integral component of Golgi membrane3.46E-03
7GO:0030125: clathrin vesicle coat7.68E-03
8GO:0005887: integral component of plasma membrane8.75E-03
9GO:0005795: Golgi stack1.21E-02
10GO:0005758: mitochondrial intermembrane space1.40E-02
11GO:0012505: endomembrane system1.69E-02
12GO:0009536: plastid1.72E-02
13GO:0043231: intracellular membrane-bounded organelle2.54E-02
14GO:0000145: exocyst2.78E-02
15GO:0032580: Golgi cisterna membrane3.04E-02
16GO:0005737: cytoplasm4.31E-02
17GO:0000325: plant-type vacuole4.62E-02
18GO:0000786: nucleosome4.77E-02
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Gene type



Gene DE type