Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G39040

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1902289: negative regulation of defense response to oomycetes0.00E+00
2GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
3GO:0005993: trehalose catabolic process0.00E+00
4GO:0009312: oligosaccharide biosynthetic process0.00E+00
5GO:2000378: negative regulation of reactive oxygen species metabolic process0.00E+00
6GO:0052386: cell wall thickening0.00E+00
7GO:0043619: regulation of transcription from RNA polymerase II promoter in response to oxidative stress0.00E+00
8GO:0006983: ER overload response0.00E+00
9GO:0010401: pectic galactan metabolic process0.00E+00
10GO:1902009: positive regulation of toxin transport0.00E+00
11GO:0046865: terpenoid transport0.00E+00
12GO:0051553: flavone biosynthetic process0.00E+00
13GO:2000068: regulation of defense response to insect0.00E+00
14GO:0006654: phosphatidic acid biosynthetic process0.00E+00
15GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
16GO:0015012: heparan sulfate proteoglycan biosynthetic process7.04E-06
17GO:0006024: glycosaminoglycan biosynthetic process7.04E-06
18GO:1901002: positive regulation of response to salt stress9.42E-05
19GO:0009620: response to fungus1.73E-04
20GO:0009863: salicylic acid mediated signaling pathway1.98E-04
21GO:0030150: protein import into mitochondrial matrix1.98E-04
22GO:0015031: protein transport2.51E-04
23GO:0042350: GDP-L-fucose biosynthetic process3.97E-04
24GO:1990641: response to iron ion starvation3.97E-04
25GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.97E-04
26GO:1990022: RNA polymerase III complex localization to nucleus3.97E-04
27GO:0043182: vacuolar sequestering of sodium ion3.97E-04
28GO:0044376: RNA polymerase II complex import to nucleus3.97E-04
29GO:0046246: terpene biosynthetic process3.97E-04
30GO:0051090: regulation of sequence-specific DNA binding transcription factor activity3.97E-04
31GO:0050691: regulation of defense response to virus by host3.97E-04
32GO:1902065: response to L-glutamate3.97E-04
33GO:1903648: positive regulation of chlorophyll catabolic process3.97E-04
34GO:0034975: protein folding in endoplasmic reticulum3.97E-04
35GO:0016337: single organismal cell-cell adhesion3.97E-04
36GO:0000077: DNA damage checkpoint3.97E-04
37GO:0042742: defense response to bacterium4.20E-04
38GO:0051707: response to other organism4.41E-04
39GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.58E-04
40GO:0006605: protein targeting4.58E-04
41GO:0030968: endoplasmic reticulum unfolded protein response5.59E-04
42GO:0015780: nucleotide-sugar transport6.69E-04
43GO:0008202: steroid metabolic process7.90E-04
44GO:0009738: abscisic acid-activated signaling pathway7.96E-04
45GO:0052541: plant-type cell wall cellulose metabolic process8.60E-04
46GO:0042853: L-alanine catabolic process8.60E-04
47GO:0040020: regulation of meiotic nuclear division8.60E-04
48GO:0009812: flavonoid metabolic process8.60E-04
49GO:0006101: citrate metabolic process8.60E-04
50GO:0043066: negative regulation of apoptotic process8.60E-04
51GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine8.60E-04
52GO:0052542: defense response by callose deposition8.60E-04
53GO:0080183: response to photooxidative stress8.60E-04
54GO:0010155: regulation of proton transport8.60E-04
55GO:0080151: positive regulation of salicylic acid mediated signaling pathway8.60E-04
56GO:0006568: tryptophan metabolic process8.60E-04
57GO:0051607: defense response to virus9.76E-04
58GO:0009816: defense response to bacterium, incompatible interaction1.12E-03
59GO:0000266: mitochondrial fission1.21E-03
60GO:0052546: cell wall pectin metabolic process1.40E-03
61GO:0080168: abscisic acid transport1.40E-03
62GO:0042351: 'de novo' GDP-L-fucose biosynthetic process1.40E-03
63GO:0080163: regulation of protein serine/threonine phosphatase activity1.40E-03
64GO:0071398: cellular response to fatty acid1.40E-03
65GO:0006065: UDP-glucuronate biosynthetic process1.40E-03
66GO:0015783: GDP-fucose transport1.40E-03
67GO:0032504: multicellular organism reproduction1.40E-03
68GO:0010476: gibberellin mediated signaling pathway1.40E-03
69GO:0010325: raffinose family oligosaccharide biosynthetic process1.40E-03
70GO:0009410: response to xenobiotic stimulus1.40E-03
71GO:0015692: lead ion transport1.40E-03
72GO:0002237: response to molecule of bacterial origin1.54E-03
73GO:0002239: response to oomycetes2.02E-03
74GO:0072334: UDP-galactose transmembrane transport2.02E-03
75GO:0009226: nucleotide-sugar biosynthetic process2.02E-03
76GO:0071323: cellular response to chitin2.02E-03
77GO:0009963: positive regulation of flavonoid biosynthetic process2.02E-03
78GO:0080024: indolebutyric acid metabolic process2.02E-03
79GO:0055070: copper ion homeostasis2.02E-03
80GO:0001676: long-chain fatty acid metabolic process2.02E-03
81GO:0070301: cellular response to hydrogen peroxide2.02E-03
82GO:0051639: actin filament network formation2.02E-03
83GO:0007275: multicellular organism development2.45E-03
84GO:0006631: fatty acid metabolic process2.46E-03
85GO:0006886: intracellular protein transport2.65E-03
86GO:0045088: regulation of innate immune response2.71E-03
87GO:0022622: root system development2.71E-03
88GO:0006621: protein retention in ER lumen2.71E-03
89GO:0015867: ATP transport2.71E-03
90GO:0000003: reproduction2.71E-03
91GO:0009939: positive regulation of gibberellic acid mediated signaling pathway2.71E-03
92GO:0051764: actin crosslink formation2.71E-03
93GO:0010150: leaf senescence2.75E-03
94GO:0031348: negative regulation of defense response2.84E-03
95GO:0009306: protein secretion3.37E-03
96GO:0006097: glyoxylate cycle3.47E-03
97GO:0009229: thiamine diphosphate biosynthetic process3.47E-03
98GO:0006665: sphingolipid metabolic process3.47E-03
99GO:0009751: response to salicylic acid3.53E-03
100GO:0009617: response to bacterium3.60E-03
101GO:0047484: regulation of response to osmotic stress4.29E-03
102GO:1900425: negative regulation of defense response to bacterium4.29E-03
103GO:0033365: protein localization to organelle4.29E-03
104GO:0009228: thiamine biosynthetic process4.29E-03
105GO:0006014: D-ribose metabolic process4.29E-03
106GO:0009759: indole glucosinolate biosynthetic process4.29E-03
107GO:0015866: ADP transport4.29E-03
108GO:0010256: endomembrane system organization4.29E-03
109GO:0006623: protein targeting to vacuole4.91E-03
110GO:0030643: cellular phosphate ion homeostasis5.17E-03
111GO:0009861: jasmonic acid and ethylene-dependent systemic resistance5.17E-03
112GO:0048444: floral organ morphogenesis5.17E-03
113GO:0002229: defense response to oomycetes5.26E-03
114GO:0010193: response to ozone5.26E-03
115GO:1900057: positive regulation of leaf senescence6.11E-03
116GO:0006333: chromatin assembly or disassembly6.11E-03
117GO:0046470: phosphatidylcholine metabolic process6.11E-03
118GO:0006464: cellular protein modification process6.38E-03
119GO:0009850: auxin metabolic process7.10E-03
120GO:1900150: regulation of defense response to fungus7.10E-03
121GO:0045010: actin nucleation7.10E-03
122GO:0031540: regulation of anthocyanin biosynthetic process7.10E-03
123GO:0006102: isocitrate metabolic process7.10E-03
124GO:0016559: peroxisome fission7.10E-03
125GO:0007155: cell adhesion7.10E-03
126GO:0016192: vesicle-mediated transport8.02E-03
127GO:0006075: (1->3)-beta-D-glucan biosynthetic process8.15E-03
128GO:0010417: glucuronoxylan biosynthetic process8.15E-03
129GO:0006906: vesicle fusion8.51E-03
130GO:0010332: response to gamma radiation9.25E-03
131GO:0010112: regulation of systemic acquired resistance9.25E-03
132GO:0009056: catabolic process9.25E-03
133GO:0000902: cell morphogenesis9.25E-03
134GO:0009835: fruit ripening9.25E-03
135GO:0007338: single fertilization9.25E-03
136GO:0016311: dephosphorylation9.46E-03
137GO:0008219: cell death9.96E-03
138GO:0009086: methionine biosynthetic process1.04E-02
139GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.04E-02
140GO:0051555: flavonol biosynthetic process1.16E-02
141GO:0009870: defense response signaling pathway, resistance gene-dependent1.16E-02
142GO:0043069: negative regulation of programmed cell death1.16E-02
143GO:0010629: negative regulation of gene expression1.16E-02
144GO:0045087: innate immune response1.27E-02
145GO:0019684: photosynthesis, light reaction1.29E-02
146GO:0006913: nucleocytoplasmic transport1.29E-02
147GO:0009089: lysine biosynthetic process via diaminopimelate1.29E-02
148GO:0052544: defense response by callose deposition in cell wall1.29E-02
149GO:0000038: very long-chain fatty acid metabolic process1.29E-02
150GO:0006099: tricarboxylic acid cycle1.32E-02
151GO:0045037: protein import into chloroplast stroma1.42E-02
152GO:0006470: protein dephosphorylation1.50E-02
153GO:2000012: regulation of auxin polar transport1.55E-02
154GO:0010102: lateral root morphogenesis1.55E-02
155GO:0030036: actin cytoskeleton organization1.55E-02
156GO:0007034: vacuolar transport1.69E-02
157GO:0007015: actin filament organization1.69E-02
158GO:0007030: Golgi organization1.83E-02
159GO:0009901: anther dehiscence1.83E-02
160GO:0090351: seedling development1.83E-02
161GO:0070588: calcium ion transmembrane transport1.83E-02
162GO:0006855: drug transmembrane transport1.91E-02
163GO:0000162: tryptophan biosynthetic process1.98E-02
164GO:0031347: regulation of defense response1.98E-02
165GO:0034976: response to endoplasmic reticulum stress1.98E-02
166GO:0009846: pollen germination2.06E-02
167GO:0080147: root hair cell development2.13E-02
168GO:0000027: ribosomal large subunit assembly2.13E-02
169GO:0051017: actin filament bundle assembly2.13E-02
170GO:0006289: nucleotide-excision repair2.13E-02
171GO:0006486: protein glycosylation2.21E-02
172GO:0010224: response to UV-B2.29E-02
173GO:0009269: response to desiccation2.44E-02
174GO:0048278: vesicle docking2.44E-02
175GO:0016114: terpenoid biosynthetic process2.44E-02
176GO:0006334: nucleosome assembly2.44E-02
177GO:0009814: defense response, incompatible interaction2.61E-02
178GO:0016226: iron-sulfur cluster assembly2.61E-02
179GO:0071456: cellular response to hypoxia2.61E-02
180GO:0009693: ethylene biosynthetic process2.77E-02
181GO:0009411: response to UV2.77E-02
182GO:0010200: response to chitin3.00E-02
183GO:0009553: embryo sac development3.05E-02
184GO:0009555: pollen development3.15E-02
185GO:0006952: defense response3.20E-02
186GO:0010051: xylem and phloem pattern formation3.29E-02
187GO:0010087: phloem or xylem histogenesis3.29E-02
188GO:0008360: regulation of cell shape3.48E-02
189GO:0045489: pectin biosynthetic process3.48E-02
190GO:0010197: polar nucleus fusion3.48E-02
191GO:0061025: membrane fusion3.66E-02
192GO:0019252: starch biosynthetic process3.85E-02
193GO:0071554: cell wall organization or biogenesis4.04E-02
194GO:0006891: intra-Golgi vesicle-mediated transport4.04E-02
195GO:0006635: fatty acid beta-oxidation4.04E-02
196GO:0006508: proteolysis4.21E-02
197GO:0016032: viral process4.23E-02
198GO:0032502: developmental process4.23E-02
199GO:0030163: protein catabolic process4.43E-02
200GO:0016042: lipid catabolic process4.49E-02
201GO:0006457: protein folding4.57E-02
202GO:0009567: double fertilization forming a zygote and endosperm4.63E-02
203GO:0009408: response to heat4.65E-02
204GO:0009737: response to abscisic acid4.83E-02
RankGO TermAdjusted P value
1GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
2GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity0.00E+00
3GO:0050334: thiaminase activity0.00E+00
4GO:0005046: KDEL sequence binding0.00E+00
5GO:0061133: endopeptidase activator activity0.00E+00
6GO:0097008: (3E)-4,8-dimethyl-1,3,7-nonatriene synthase activity0.00E+00
7GO:0004555: alpha,alpha-trehalase activity0.00E+00
8GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity0.00E+00
9GO:0034338: short-chain carboxylesterase activity0.00E+00
10GO:0033759: flavone synthase activity0.00E+00
11GO:0097007: 4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity0.00E+00
12GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
13GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity2.26E-05
14GO:0004630: phospholipase D activity2.26E-05
15GO:0005460: UDP-glucose transmembrane transporter activity5.35E-05
16GO:0005459: UDP-galactose transmembrane transporter activity1.46E-04
17GO:0031418: L-ascorbic acid binding1.98E-04
18GO:0102391: decanoate--CoA ligase activity2.83E-04
19GO:0004656: procollagen-proline 4-dioxygenase activity2.83E-04
20GO:0004467: long-chain fatty acid-CoA ligase activity3.65E-04
21GO:0047150: betaine-homocysteine S-methyltransferase activity3.97E-04
22GO:0010285: L,L-diaminopimelate aminotransferase activity3.97E-04
23GO:0016920: pyroglutamyl-peptidase activity3.97E-04
24GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity3.97E-04
25GO:0050577: GDP-L-fucose synthase activity3.97E-04
26GO:0015927: trehalase activity3.97E-04
27GO:0008142: oxysterol binding5.59E-04
28GO:0000774: adenyl-nucleotide exchange factor activity8.60E-04
29GO:0032934: sterol binding8.60E-04
30GO:0015036: disulfide oxidoreductase activity8.60E-04
31GO:0050736: O-malonyltransferase activity8.60E-04
32GO:0010331: gibberellin binding8.60E-04
33GO:0003994: aconitate hydratase activity8.60E-04
34GO:0005509: calcium ion binding1.09E-03
35GO:0000975: regulatory region DNA binding1.40E-03
36GO:0005457: GDP-fucose transmembrane transporter activity1.40E-03
37GO:0003979: UDP-glucose 6-dehydrogenase activity1.40E-03
38GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.98E-03
39GO:0035529: NADH pyrophosphatase activity2.02E-03
40GO:0030527: structural constituent of chromatin2.02E-03
41GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity2.02E-03
42GO:0010178: IAA-amino acid conjugate hydrolase activity2.02E-03
43GO:0005515: protein binding2.37E-03
44GO:0015297: antiporter activity2.56E-03
45GO:0035251: UDP-glucosyltransferase activity2.60E-03
46GO:0046923: ER retention sequence binding2.71E-03
47GO:0070628: proteasome binding2.71E-03
48GO:0015368: calcium:cation antiporter activity2.71E-03
49GO:0004834: tryptophan synthase activity2.71E-03
50GO:0015369: calcium:proton antiporter activity2.71E-03
51GO:0004722: protein serine/threonine phosphatase activity2.95E-03
52GO:0004623: phospholipase A2 activity3.47E-03
53GO:0005546: phosphatidylinositol-4,5-bisphosphate binding3.47E-03
54GO:0047631: ADP-ribose diphosphatase activity3.47E-03
55GO:0000210: NAD+ diphosphatase activity4.29E-03
56GO:0046872: metal ion binding4.67E-03
57GO:0004747: ribokinase activity5.17E-03
58GO:0005347: ATP transmembrane transporter activity5.17E-03
59GO:0015217: ADP transmembrane transporter activity5.17E-03
60GO:0008320: protein transmembrane transporter activity6.11E-03
61GO:0051082: unfolded protein binding6.27E-03
62GO:0047893: flavonol 3-O-glucosyltransferase activity7.10E-03
63GO:0052747: sinapyl alcohol dehydrogenase activity7.10E-03
64GO:0015491: cation:cation antiporter activity7.10E-03
65GO:0004869: cysteine-type endopeptidase inhibitor activity7.10E-03
66GO:0008865: fructokinase activity7.10E-03
67GO:0003843: 1,3-beta-D-glucan synthase activity8.15E-03
68GO:0004806: triglyceride lipase activity8.98E-03
69GO:0030247: polysaccharide binding8.98E-03
70GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity9.25E-03
71GO:0030170: pyridoxal phosphate binding9.56E-03
72GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.96E-03
73GO:0004743: pyruvate kinase activity1.04E-02
74GO:0030955: potassium ion binding1.04E-02
75GO:0042803: protein homodimerization activity1.05E-02
76GO:0004864: protein phosphatase inhibitor activity1.16E-02
77GO:0030234: enzyme regulator activity1.16E-02
78GO:0003993: acid phosphatase activity1.32E-02
79GO:0000149: SNARE binding1.38E-02
80GO:0016740: transferase activity1.40E-02
81GO:0045551: cinnamyl-alcohol dehydrogenase activity1.42E-02
82GO:0015198: oligopeptide transporter activity1.42E-02
83GO:0051539: 4 iron, 4 sulfur cluster binding1.44E-02
84GO:0005388: calcium-transporting ATPase activity1.55E-02
85GO:0015266: protein channel activity1.55E-02
86GO:0031072: heat shock protein binding1.55E-02
87GO:0005484: SNAP receptor activity1.64E-02
88GO:0008061: chitin binding1.83E-02
89GO:0003712: transcription cofactor activity1.83E-02
90GO:0051287: NAD binding1.98E-02
91GO:0043130: ubiquitin binding2.13E-02
92GO:0051536: iron-sulfur cluster binding2.13E-02
93GO:0051087: chaperone binding2.29E-02
94GO:0003682: chromatin binding2.35E-02
95GO:0004707: MAP kinase activity2.44E-02
96GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.61E-02
97GO:0043565: sequence-specific DNA binding2.64E-02
98GO:0008810: cellulase activity2.77E-02
99GO:0003756: protein disulfide isomerase activity2.94E-02
100GO:0022857: transmembrane transporter activity2.96E-02
101GO:0005102: receptor binding3.12E-02
102GO:0015035: protein disulfide oxidoreductase activity3.24E-02
103GO:0050662: coenzyme binding3.66E-02
104GO:0016853: isomerase activity3.66E-02
105GO:0016758: transferase activity, transferring hexosyl groups3.83E-02
106GO:0004872: receptor activity3.85E-02
107GO:0003700: transcription factor activity, sequence-specific DNA binding3.95E-02
108GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.04E-02
109GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.43E-02
110GO:0051015: actin filament binding4.43E-02
111GO:0016791: phosphatase activity4.63E-02
112GO:0008565: protein transporter activity4.69E-02
113GO:0005524: ATP binding4.80E-02
114GO:0008483: transaminase activity4.83E-02
115GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.83E-02
116GO:0008237: metallopeptidase activity4.83E-02
117GO:0016787: hydrolase activity4.87E-02
RankGO TermAdjusted P value
1GO:0005789: endoplasmic reticulum membrane2.44E-08
2GO:0016021: integral component of membrane4.74E-07
3GO:0005783: endoplasmic reticulum2.02E-05
4GO:0005801: cis-Golgi network2.83E-04
5GO:0045252: oxoglutarate dehydrogenase complex3.97E-04
6GO:0001405: presequence translocase-associated import motor3.97E-04
7GO:0005794: Golgi apparatus4.07E-04
8GO:0030665: clathrin-coated vesicle membrane7.90E-04
9GO:0031314: extrinsic component of mitochondrial inner membrane8.60E-04
10GO:0030134: ER to Golgi transport vesicle8.60E-04
11GO:0017119: Golgi transport complex9.20E-04
12GO:0005774: vacuolar membrane1.70E-03
13GO:0030176: integral component of endoplasmic reticulum membrane1.73E-03
14GO:0005795: Golgi stack1.73E-03
15GO:0032432: actin filament bundle2.02E-03
16GO:0030658: transport vesicle membrane2.02E-03
17GO:0009506: plasmodesma2.33E-03
18GO:0031902: late endosome membrane2.46E-03
19GO:0005741: mitochondrial outer membrane2.60E-03
20GO:0000139: Golgi membrane2.72E-03
21GO:0005743: mitochondrial inner membrane3.19E-03
22GO:0005744: mitochondrial inner membrane presequence translocase complex3.37E-03
23GO:0000164: protein phosphatase type 1 complex3.47E-03
24GO:0005885: Arp2/3 protein complex5.17E-03
25GO:0030173: integral component of Golgi membrane5.17E-03
26GO:0009986: cell surface6.11E-03
27GO:0031305: integral component of mitochondrial inner membrane7.10E-03
28GO:0016020: membrane7.49E-03
29GO:0005779: integral component of peroxisomal membrane8.15E-03
30GO:0000148: 1,3-beta-D-glucan synthase complex8.15E-03
31GO:0005623: cell8.65E-03
32GO:0008541: proteasome regulatory particle, lid subcomplex1.29E-02
33GO:0005884: actin filament1.29E-02
34GO:0031201: SNARE complex1.51E-02
35GO:0046658: anchored component of plasma membrane1.80E-02
36GO:0005737: cytoplasm2.57E-02
37GO:0031410: cytoplasmic vesicle2.61E-02
38GO:0005622: intracellular2.64E-02
39GO:0005829: cytosol3.21E-02
40GO:0005777: peroxisome3.84E-02
41GO:0019898: extrinsic component of membrane3.85E-02
42GO:0009543: chloroplast thylakoid lumen3.93E-02
43GO:0016592: mediator complex4.23E-02
44GO:0000785: chromatin4.23E-02
45GO:0005778: peroxisomal membrane4.83E-02
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Gene type



Gene DE type