co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G38660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0035674: tricarboxylic acid transmembrane transport	0.00E+00
3	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
4	GO:0015979: photosynthesis	3.33E-08
5	GO:0009773: photosynthetic electron transport in photosystem I	2.18E-07
6	GO:0006094: gluconeogenesis	4.17E-07
7	GO:0015995: chlorophyll biosynthetic process	1.09E-06
8	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.01E-06
9	GO:0010196: nonphotochemical quenching	2.03E-06
10	GO:0006000: fructose metabolic process	7.40E-06
11	GO:0090391: granum assembly	7.40E-06
12	GO:0005983: starch catabolic process	1.88E-05
13	GO:0010207: photosystem II assembly	2.86E-05
14	GO:0015994: chlorophyll metabolic process	3.11E-05
15	GO:0019252: starch biosynthetic process	1.71E-04
16	GO:0006835: dicarboxylic acid transport	2.06E-04
17	GO:0000023: maltose metabolic process	2.06E-04
18	GO:0000025: maltose catabolic process	2.06E-04
19	GO:0005980: glycogen catabolic process	2.06E-04
20	GO:0009090: homoserine biosynthetic process	2.06E-04
21	GO:0010028: xanthophyll cycle	2.06E-04
22	GO:0034337: RNA folding	2.06E-04
23	GO:0006002: fructose 6-phosphate metabolic process	2.15E-04
24	GO:0055114: oxidation-reduction process	2.55E-04
25	GO:0006098: pentose-phosphate shunt	2.61E-04
26	GO:0010206: photosystem II repair	2.61E-04
27	GO:0005982: starch metabolic process	3.11E-04
28	GO:0015804: neutral amino acid transport	4.62E-04
29	GO:0080029: cellular response to boron-containing substance levels	4.62E-04
30	GO:0006898: receptor-mediated endocytosis	4.62E-04
31	GO:0005976: polysaccharide metabolic process	4.62E-04
32	GO:0010353: response to trehalose	4.62E-04
33	GO:0016122: xanthophyll metabolic process	4.62E-04
34	GO:0005986: sucrose biosynthetic process	5.50E-04
35	GO:0032259: methylation	6.22E-04
36	GO:0006518: peptide metabolic process	7.52E-04
37	GO:0006636: unsaturated fatty acid biosynthetic process	7.70E-04
38	GO:0009768: photosynthesis, light harvesting in photosystem I	9.35E-04
39	GO:0061077: chaperone-mediated protein folding	1.02E-03
40	GO:0006020: inositol metabolic process	1.07E-03
41	GO:0071484: cellular response to light intensity	1.07E-03
42	GO:0046713: borate transport	1.07E-03
43	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.07E-03
44	GO:0009067: aspartate family amino acid biosynthetic process	1.07E-03
45	GO:1902358: sulfate transmembrane transport	1.07E-03
46	GO:0006810: transport	1.12E-03
47	GO:0006364: rRNA processing	1.19E-03
48	GO:0045727: positive regulation of translation	1.43E-03
49	GO:0006021: inositol biosynthetic process	1.43E-03
50	GO:0071483: cellular response to blue light	1.43E-03
51	GO:0010021: amylopectin biosynthetic process	1.43E-03
52	GO:0016120: carotene biosynthetic process	1.81E-03
53	GO:0006656: phosphatidylcholine biosynthetic process	1.81E-03
54	GO:0009904: chloroplast accumulation movement	1.81E-03
55	GO:0042549: photosystem II stabilization	2.24E-03
56	GO:1902456: regulation of stomatal opening	2.24E-03
57	GO:0046855: inositol phosphate dephosphorylation	2.24E-03
58	GO:0010190: cytochrome b6f complex assembly	2.24E-03
59	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.24E-03
60	GO:1901259: chloroplast rRNA processing	2.69E-03
61	GO:0009903: chloroplast avoidance movement	2.69E-03
62	GO:0010189: vitamin E biosynthetic process	2.69E-03
63	GO:0009854: oxidative photosynthetic carbon pathway	2.69E-03
64	GO:0009088: threonine biosynthetic process	2.69E-03
65	GO:0010027: thylakoid membrane organization	2.93E-03
66	GO:0009772: photosynthetic electron transport in photosystem II	3.16E-03
67	GO:0008272: sulfate transport	3.16E-03
68	GO:1900057: positive regulation of leaf senescence	3.16E-03
69	GO:0009610: response to symbiotic fungus	3.16E-03
70	GO:0016311: dephosphorylation	3.63E-03
71	GO:0019827: stem cell population maintenance	3.67E-03
72	GO:0005978: glycogen biosynthetic process	3.67E-03
73	GO:0009642: response to light intensity	3.67E-03
74	GO:0030091: protein repair	3.67E-03
75	GO:0015996: chlorophyll catabolic process	4.20E-03
76	GO:0032544: plastid translation	4.20E-03
77	GO:0009631: cold acclimation	4.42E-03
78	GO:0006754: ATP biosynthetic process	4.75E-03
79	GO:0009086: methionine biosynthetic process	5.32E-03
80	GO:0006631: fatty acid metabolic process	5.75E-03
81	GO:0009641: shade avoidance	5.93E-03
82	GO:0010114: response to red light	6.23E-03
83	GO:0009089: lysine biosynthetic process via diaminopimelate	6.55E-03
84	GO:0043085: positive regulation of catalytic activity	6.55E-03
85	GO:0000272: polysaccharide catabolic process	6.55E-03
86	GO:0009750: response to fructose	6.55E-03
87	GO:0018119: peptidyl-cysteine S-nitrosylation	6.55E-03
88	GO:0006790: sulfur compound metabolic process	7.20E-03
89	GO:0009725: response to hormone	7.87E-03
90	GO:0018107: peptidyl-threonine phosphorylation	7.87E-03
91	GO:0080167: response to karrikin	8.52E-03
92	GO:0010143: cutin biosynthetic process	8.56E-03
93	GO:0019253: reductive pentose-phosphate cycle	8.56E-03
94	GO:0007015: actin filament organization	8.56E-03
95	GO:0010223: secondary shoot formation	8.56E-03
96	GO:0009266: response to temperature stimulus	8.56E-03
97	GO:0005985: sucrose metabolic process	9.27E-03
98	GO:0046854: phosphatidylinositol phosphorylation	9.27E-03
99	GO:0006096: glycolytic process	9.94E-03
100	GO:0010025: wax biosynthetic process	1.00E-02
101	GO:0045454: cell redox homeostasis	1.07E-02
102	GO:0003333: amino acid transmembrane transport	1.23E-02
103	GO:0016998: cell wall macromolecule catabolic process	1.23E-02
104	GO:0016226: iron-sulfur cluster assembly	1.32E-02
105	GO:0030433: ubiquitin-dependent ERAD pathway	1.32E-02
106	GO:0019748: secondary metabolic process	1.32E-02
107	GO:0016117: carotenoid biosynthetic process	1.57E-02
108	GO:0070417: cellular response to cold	1.57E-02
109	GO:0042631: cellular response to water deprivation	1.66E-02
110	GO:0000413: protein peptidyl-prolyl isomerization	1.66E-02
111	GO:0009741: response to brassinosteroid	1.75E-02
112	GO:0006662: glycerol ether metabolic process	1.75E-02
113	GO:0015986: ATP synthesis coupled proton transport	1.84E-02
114	GO:0006633: fatty acid biosynthetic process	1.89E-02
115	GO:0032502: developmental process	2.13E-02
116	GO:0009630: gravitropism	2.13E-02
117	GO:0006979: response to oxidative stress	2.18E-02
118	GO:1901657: glycosyl compound metabolic process	2.23E-02
119	GO:0009735: response to cytokinin	2.58E-02
120	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.75E-02
121	GO:0009611: response to wounding	2.96E-02
122	GO:0010411: xyloglucan metabolic process	2.97E-02
123	GO:0018298: protein-chromophore linkage	3.19E-02
124	GO:0009658: chloroplast organization	3.22E-02
125	GO:0000160: phosphorelay signal transduction system	3.31E-02
126	GO:0009813: flavonoid biosynthetic process	3.31E-02
127	GO:0010311: lateral root formation	3.31E-02
128	GO:0009409: response to cold	3.36E-02
129	GO:0045893: positive regulation of transcription, DNA-templated	3.42E-02
130	GO:0010218: response to far red light	3.42E-02
131	GO:0007568: aging	3.54E-02
132	GO:0006865: amino acid transport	3.66E-02
133	GO:0009853: photorespiration	3.78E-02
134	GO:0009637: response to blue light	3.78E-02
135	GO:0034599: cellular response to oxidative stress	3.90E-02
136	GO:0046686: response to cadmium ion	4.11E-02
137	GO:0006839: mitochondrial transport	4.15E-02
138	GO:0009744: response to sucrose	4.52E-02
139	GO:0000209: protein polyubiquitination	4.65E-02
140	GO:0042546: cell wall biogenesis	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
2	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
3	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
4	GO:0016166: phytoene dehydrogenase activity	0.00E+00
5	GO:0004567: beta-mannosidase activity	0.00E+00
6	GO:0033840: NDP-glucose-starch glucosyltransferase activity	0.00E+00
7	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
8	GO:0008887: glycerate kinase activity	0.00E+00
9	GO:0045550: geranylgeranyl reductase activity	0.00E+00
10	GO:0080082: esculin beta-glucosidase activity	0.00E+00
11	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
12	GO:0046408: chlorophyll synthetase activity	0.00E+00
13	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
14	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
15	GO:0015142: tricarboxylic acid transmembrane transporter activity	0.00E+00
16	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
17	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.01E-06
18	GO:0010297: heteropolysaccharide binding	2.01E-06
19	GO:0004373: glycogen (starch) synthase activity	7.40E-06
20	GO:0009011: starch synthase activity	3.11E-05
21	GO:0004332: fructose-bisphosphate aldolase activity	7.36E-05
22	GO:0035671: enone reductase activity	2.06E-04
23	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.06E-04
24	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.06E-04
25	GO:0080079: cellobiose glucosidase activity	2.06E-04
26	GO:0050521: alpha-glucan, water dikinase activity	2.06E-04
27	GO:0008184: glycogen phosphorylase activity	2.06E-04
28	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.06E-04
29	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	2.06E-04
30	GO:0004134: 4-alpha-glucanotransferase activity	2.06E-04
31	GO:0004645: phosphorylase activity	2.06E-04
32	GO:0031957: very long-chain fatty acid-CoA ligase activity	2.06E-04
33	GO:0034256: chlorophyll(ide) b reductase activity	2.06E-04
34	GO:0015168: glycerol transmembrane transporter activity	2.06E-04
35	GO:0045486: naringenin 3-dioxygenase activity	2.06E-04
36	GO:0052832: inositol monophosphate 3-phosphatase activity	4.62E-04
37	GO:0033201: alpha-1,4-glucan synthase activity	4.62E-04
38	GO:0008934: inositol monophosphate 1-phosphatase activity	4.62E-04
39	GO:0052833: inositol monophosphate 4-phosphatase activity	4.62E-04
40	GO:0018708: thiol S-methyltransferase activity	4.62E-04
41	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.62E-04
42	GO:0004412: homoserine dehydrogenase activity	4.62E-04
43	GO:0000234: phosphoethanolamine N-methyltransferase activity	4.62E-04
44	GO:0015172: acidic amino acid transmembrane transporter activity	4.62E-04
45	GO:0047746: chlorophyllase activity	4.62E-04
46	GO:0042389: omega-3 fatty acid desaturase activity	4.62E-04
47	GO:0010277: chlorophyllide a oxygenase [overall] activity	7.52E-04
48	GO:0043169: cation binding	7.52E-04
49	GO:0005310: dicarboxylic acid transmembrane transporter activity	7.52E-04
50	GO:0031409: pigment binding	7.70E-04
51	GO:0017077: oxidative phosphorylation uncoupler activity	1.07E-03
52	GO:0004072: aspartate kinase activity	1.07E-03
53	GO:0019201: nucleotide kinase activity	1.07E-03
54	GO:0015175: neutral amino acid transmembrane transporter activity	1.07E-03
55	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.07E-03
56	GO:0016851: magnesium chelatase activity	1.07E-03
57	GO:0046715: borate transmembrane transporter activity	1.07E-03
58	GO:0008168: methyltransferase activity	1.17E-03
59	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.43E-03
60	GO:0015204: urea transmembrane transporter activity	1.43E-03
61	GO:0048038: quinone binding	2.04E-03
62	GO:2001070: starch binding	2.24E-03
63	GO:0008200: ion channel inhibitor activity	2.24E-03
64	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.69E-03
65	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.69E-03
66	GO:0102391: decanoate--CoA ligase activity	2.69E-03
67	GO:0004017: adenylate kinase activity	2.69E-03
68	GO:0004602: glutathione peroxidase activity	2.69E-03
69	GO:0016168: chlorophyll binding	3.10E-03
70	GO:0004467: long-chain fatty acid-CoA ligase activity	3.16E-03
71	GO:0008271: secondary active sulfate transmembrane transporter activity	4.20E-03
72	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.20E-03
73	GO:0003993: acid phosphatase activity	5.05E-03
74	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.32E-03
75	GO:0008047: enzyme activator activity	5.93E-03
76	GO:0030234: enzyme regulator activity	5.93E-03
77	GO:0044183: protein binding involved in protein folding	6.55E-03
78	GO:0047372: acylglycerol lipase activity	6.55E-03
79	GO:0051537: 2 iron, 2 sulfur cluster binding	6.74E-03
80	GO:0015293: symporter activity	7.00E-03
81	GO:0015116: sulfate transmembrane transporter activity	7.20E-03
82	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.27E-03
83	GO:0004565: beta-galactosidase activity	7.87E-03
84	GO:0031072: heat shock protein binding	7.87E-03
85	GO:0016787: hydrolase activity	7.90E-03
86	GO:0016491: oxidoreductase activity	1.02E-02
87	GO:0005528: FK506 binding	1.08E-02
88	GO:0051536: iron-sulfur cluster binding	1.08E-02
89	GO:0031418: L-ascorbic acid binding	1.08E-02
90	GO:0015035: protein disulfide oxidoreductase activity	1.23E-02
91	GO:0019843: rRNA binding	1.50E-02
92	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.54E-02
93	GO:0047134: protein-disulfide reductase activity	1.57E-02
94	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.75E-02
95	GO:0004791: thioredoxin-disulfide reductase activity	1.84E-02
96	GO:0050662: coenzyme binding	1.84E-02
97	GO:0004872: receptor activity	1.94E-02
98	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.03E-02
99	GO:0000156: phosphorelay response regulator activity	2.23E-02
100	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.23E-02
101	GO:0016597: amino acid binding	2.54E-02
102	GO:0015250: water channel activity	2.64E-02
103	GO:0102483: scopolin beta-glucosidase activity	2.97E-02
104	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.97E-02
105	GO:0004222: metalloendopeptidase activity	3.42E-02
106	GO:0003746: translation elongation factor activity	3.78E-02
107	GO:0008422: beta-glucosidase activity	4.02E-02
108	GO:0050661: NADP binding	4.15E-02
109	GO:0004185: serine-type carboxypeptidase activity	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009507: chloroplast	1.60E-37
4	GO:0009534: chloroplast thylakoid	5.36E-35
5	GO:0009535: chloroplast thylakoid membrane	2.22E-29
6	GO:0009941: chloroplast envelope	1.07E-17
7	GO:0009570: chloroplast stroma	4.59E-13
8	GO:0009579: thylakoid	9.80E-11
9	GO:0031977: thylakoid lumen	1.11E-10
10	GO:0009543: chloroplast thylakoid lumen	2.22E-10
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.64E-08
12	GO:0010287: plastoglobule	1.25E-07
13	GO:0031969: chloroplast membrane	4.69E-05
14	GO:0042651: thylakoid membrane	5.71E-05
15	GO:0009501: amyloplast	1.73E-04
16	GO:0010319: stromule	2.68E-04
17	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.62E-04
18	GO:0009569: chloroplast starch grain	4.62E-04
19	GO:0031357: integral component of chloroplast inner membrane	4.62E-04
20	GO:0030095: chloroplast photosystem II	6.19E-04
21	GO:0030076: light-harvesting complex	6.92E-04
22	GO:0010007: magnesium chelatase complex	7.52E-04
23	GO:0009509: chromoplast	7.52E-04
24	GO:0009654: photosystem II oxygen evolving complex	9.35E-04
25	GO:0009544: chloroplast ATP synthase complex	1.43E-03
26	GO:0019898: extrinsic component of membrane	1.91E-03
27	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.24E-03
28	GO:0048046: apoplast	2.84E-03
29	GO:0031982: vesicle	3.67E-03
30	GO:0008180: COP9 signalosome	4.75E-03
31	GO:0032040: small-subunit processome	7.20E-03
32	GO:0015935: small ribosomal subunit	1.23E-02
33	GO:0009522: photosystem I	1.84E-02
34	GO:0019005: SCF ubiquitin ligase complex	3.19E-02