Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G38650

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000117: negative regulation of cysteine-type endopeptidase activity0.00E+00
2GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
3GO:0010398: xylogalacturonan metabolic process0.00E+00
4GO:1900409: positive regulation of cellular response to oxidative stress0.00E+00
5GO:0072722: response to amitrole0.00E+00
6GO:0006903: vesicle targeting0.00E+00
7GO:0006216: cytidine catabolic process0.00E+00
8GO:0006858: extracellular transport0.00E+00
9GO:0046680: response to DDT0.00E+00
10GO:0006564: L-serine biosynthetic process5.04E-07
11GO:0006102: isocitrate metabolic process4.26E-06
12GO:0046686: response to cadmium ion3.30E-05
13GO:0046283: anthocyanin-containing compound metabolic process6.16E-05
14GO:0006099: tricarboxylic acid cycle8.28E-05
15GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly9.03E-05
16GO:0042964: thioredoxin reduction2.34E-04
17GO:0006144: purine nucleobase metabolic process2.34E-04
18GO:0019628: urate catabolic process2.34E-04
19GO:1901430: positive regulation of syringal lignin biosynthetic process2.34E-04
20GO:0010421: hydrogen peroxide-mediated programmed cell death2.34E-04
21GO:0000032: cell wall mannoprotein biosynthetic process2.34E-04
22GO:0055114: oxidation-reduction process2.54E-04
23GO:0060321: acceptance of pollen2.59E-04
24GO:0010120: camalexin biosynthetic process2.59E-04
25GO:1901657: glycosyl compound metabolic process2.89E-04
26GO:0006511: ubiquitin-dependent protein catabolic process2.89E-04
27GO:0009821: alkaloid biosynthetic process3.13E-04
28GO:0009615: response to virus3.96E-04
29GO:0080026: response to indolebutyric acid5.20E-04
30GO:0043132: NAD transport5.20E-04
31GO:0006996: organelle organization5.20E-04
32GO:0015709: thiosulfate transport5.20E-04
33GO:0071422: succinate transmembrane transport5.20E-04
34GO:0046939: nucleotide phosphorylation5.20E-04
35GO:0009805: coumarin biosynthetic process5.20E-04
36GO:0006672: ceramide metabolic process5.20E-04
37GO:0010372: positive regulation of gibberellin biosynthetic process5.20E-04
38GO:0009058: biosynthetic process5.63E-04
39GO:0006807: nitrogen compound metabolic process6.54E-04
40GO:0007031: peroxisome organization8.23E-04
41GO:0044375: regulation of peroxisome size8.44E-04
42GO:0090630: activation of GTPase activity8.44E-04
43GO:0006517: protein deglycosylation8.44E-04
44GO:0001927: exocyst assembly8.44E-04
45GO:0010272: response to silver ion8.44E-04
46GO:0033591: response to L-ascorbic acid8.44E-04
47GO:0009062: fatty acid catabolic process8.44E-04
48GO:0010359: regulation of anion channel activity8.44E-04
49GO:0055074: calcium ion homeostasis8.44E-04
50GO:0010150: leaf senescence8.47E-04
51GO:0080024: indolebutyric acid metabolic process1.20E-03
52GO:0009298: GDP-mannose biosynthetic process1.20E-03
53GO:0015729: oxaloacetate transport1.20E-03
54GO:0006612: protein targeting to membrane1.20E-03
55GO:0006893: Golgi to plasma membrane transport1.20E-03
56GO:0051601: exocyst localization1.20E-03
57GO:0015858: nucleoside transport1.20E-03
58GO:0030433: ubiquitin-dependent ERAD pathway1.33E-03
59GO:0006878: cellular copper ion homeostasis1.61E-03
60GO:0005513: detection of calcium ion2.05E-03
61GO:0097428: protein maturation by iron-sulfur cluster transfer2.05E-03
62GO:0098719: sodium ion import across plasma membrane2.05E-03
63GO:0071423: malate transmembrane transport2.05E-03
64GO:0009851: auxin biosynthetic process2.27E-03
65GO:0035435: phosphate ion transmembrane transport2.52E-03
66GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione2.52E-03
67GO:0009972: cytidine deamination2.52E-03
68GO:0006561: proline biosynthetic process2.52E-03
69GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.52E-03
70GO:0006555: methionine metabolic process2.52E-03
71GO:0009228: thiamine biosynthetic process2.52E-03
72GO:0042742: defense response to bacterium2.53E-03
73GO:0030163: protein catabolic process2.77E-03
74GO:0009099: valine biosynthetic process3.03E-03
75GO:0009554: megasporogenesis3.03E-03
76GO:0019509: L-methionine salvage from methylthioadenosine3.03E-03
77GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.03E-03
78GO:0009612: response to mechanical stimulus3.03E-03
79GO:0009082: branched-chain amino acid biosynthetic process3.03E-03
80GO:1900056: negative regulation of leaf senescence3.58E-03
81GO:0071669: plant-type cell wall organization or biogenesis3.58E-03
82GO:0008272: sulfate transport3.58E-03
83GO:0042744: hydrogen peroxide catabolic process3.66E-03
84GO:0009751: response to salicylic acid4.01E-03
85GO:0015031: protein transport4.06E-03
86GO:0006402: mRNA catabolic process4.15E-03
87GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.15E-03
88GO:0006491: N-glycan processing4.15E-03
89GO:0009699: phenylpropanoid biosynthetic process4.74E-03
90GO:0019430: removal of superoxide radicals4.74E-03
91GO:0007186: G-protein coupled receptor signaling pathway4.74E-03
92GO:0009097: isoleucine biosynthetic process4.74E-03
93GO:0010204: defense response signaling pathway, resistance gene-independent4.74E-03
94GO:0006499: N-terminal protein myristoylation5.04E-03
95GO:0009407: toxin catabolic process5.04E-03
96GO:0007568: aging5.28E-03
97GO:0046685: response to arsenic-containing substance5.37E-03
98GO:0051453: regulation of intracellular pH6.03E-03
99GO:0043067: regulation of programmed cell death6.03E-03
100GO:0009098: leucine biosynthetic process6.03E-03
101GO:0048354: mucilage biosynthetic process involved in seed coat development6.03E-03
102GO:0006839: mitochondrial transport6.60E-03
103GO:0009688: abscisic acid biosynthetic process6.71E-03
104GO:0043069: negative regulation of programmed cell death6.71E-03
105GO:0006032: chitin catabolic process6.71E-03
106GO:0006887: exocytosis6.88E-03
107GO:0072593: reactive oxygen species metabolic process7.43E-03
108GO:0043085: positive regulation of catalytic activity7.43E-03
109GO:0009682: induced systemic resistance7.43E-03
110GO:0052544: defense response by callose deposition in cell wall7.43E-03
111GO:0000272: polysaccharide catabolic process7.43E-03
112GO:0016925: protein sumoylation8.17E-03
113GO:0006890: retrograde vesicle-mediated transport, Golgi to ER8.17E-03
114GO:0006790: sulfur compound metabolic process8.17E-03
115GO:0002213: defense response to insect8.17E-03
116GO:0009636: response to toxic substance8.39E-03
117GO:0009718: anthocyanin-containing compound biosynthetic process8.93E-03
118GO:0006829: zinc II ion transport8.93E-03
119GO:0009846: pollen germination9.38E-03
120GO:0034605: cellular response to heat9.72E-03
121GO:0046854: phosphatidylinositol phosphorylation1.05E-02
122GO:0019853: L-ascorbic acid biosynthetic process1.05E-02
123GO:0010167: response to nitrate1.05E-02
124GO:0000162: tryptophan biosynthetic process1.14E-02
125GO:0006096: glycolytic process1.19E-02
126GO:0005992: trehalose biosynthetic process1.22E-02
127GO:0009626: plant-type hypersensitive response1.27E-02
128GO:0009620: response to fungus1.31E-02
129GO:0006874: cellular calcium ion homeostasis1.31E-02
130GO:0045454: cell redox homeostasis1.35E-02
131GO:0016998: cell wall macromolecule catabolic process1.40E-02
132GO:0015992: proton transport1.40E-02
133GO:0019748: secondary metabolic process1.50E-02
134GO:0010227: floral organ abscission1.59E-02
135GO:0009306: protein secretion1.69E-02
136GO:0010089: xylem development1.69E-02
137GO:0009561: megagametogenesis1.69E-02
138GO:0051028: mRNA transport1.79E-02
139GO:0042147: retrograde transport, endosome to Golgi1.79E-02
140GO:0010118: stomatal movement1.89E-02
141GO:0042631: cellular response to water deprivation1.89E-02
142GO:0045489: pectin biosynthetic process1.99E-02
143GO:0006662: glycerol ether metabolic process1.99E-02
144GO:0006814: sodium ion transport2.10E-02
145GO:0009646: response to absence of light2.10E-02
146GO:0010183: pollen tube guidance2.20E-02
147GO:0006635: fatty acid beta-oxidation2.31E-02
148GO:0009630: gravitropism2.42E-02
149GO:0031047: gene silencing by RNA2.42E-02
150GO:0009651: response to salt stress2.64E-02
151GO:0006914: autophagy2.65E-02
152GO:0006464: cellular protein modification process2.65E-02
153GO:0010252: auxin homeostasis2.65E-02
154GO:0006904: vesicle docking involved in exocytosis2.77E-02
155GO:0071805: potassium ion transmembrane transport2.77E-02
156GO:0006979: response to oxidative stress2.85E-02
157GO:0016579: protein deubiquitination2.89E-02
158GO:0009735: response to cytokinin3.23E-02
159GO:0009627: systemic acquired resistance3.25E-02
160GO:0006950: response to stress3.38E-02
161GO:0016049: cell growth3.50E-02
162GO:0009416: response to light stimulus3.60E-02
163GO:0008219: cell death3.63E-02
164GO:0048767: root hair elongation3.76E-02
165GO:0010043: response to zinc ion4.03E-02
166GO:0010119: regulation of stomatal movement4.03E-02
167GO:0045087: innate immune response4.30E-02
168GO:0034599: cellular response to oxidative stress4.43E-02
169GO:0009723: response to ethylene4.44E-02
170GO:0030001: metal ion transport4.71E-02
171GO:0055085: transmembrane transport4.82E-02
172GO:0006897: endocytosis4.85E-02
RankGO TermAdjusted P value
1GO:0004846: urate oxidase activity0.00E+00
2GO:0001729: ceramide kinase activity0.00E+00
3GO:0016504: peptidase activator activity0.00E+00
4GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
5GO:0051766: inositol trisphosphate kinase activity0.00E+00
6GO:0070577: lysine-acetylated histone binding0.00E+00
7GO:0008418: protein-N-terminal asparagine amidohydrolase activity0.00E+00
8GO:0051765: inositol tetrakisphosphate kinase activity0.00E+00
9GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
10GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group0.00E+00
11GO:0047844: deoxycytidine deaminase activity0.00E+00
12GO:0044610: FMN transmembrane transporter activity0.00E+00
13GO:0004449: isocitrate dehydrogenase (NAD+) activity7.57E-08
14GO:0004617: phosphoglycerate dehydrogenase activity2.56E-06
15GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity9.03E-05
16GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity9.03E-05
17GO:0036402: proteasome-activating ATPase activity9.03E-05
18GO:0051287: NAD binding1.70E-04
19GO:0019786: Atg8-specific protease activity2.34E-04
20GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity2.34E-04
21GO:0016229: steroid dehydrogenase activity2.34E-04
22GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity2.34E-04
23GO:0010013: N-1-naphthylphthalamic acid binding2.34E-04
24GO:0000824: inositol tetrakisphosphate 3-kinase activity2.34E-04
25GO:0033984: indole-3-glycerol-phosphate lyase activity2.34E-04
26GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity2.34E-04
27GO:0047326: inositol tetrakisphosphate 5-kinase activity2.34E-04
28GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity2.34E-04
29GO:0070401: NADP+ binding2.34E-04
30GO:0048037: cofactor binding2.34E-04
31GO:0004476: mannose-6-phosphate isomerase activity2.34E-04
32GO:0015230: FAD transmembrane transporter activity2.34E-04
33GO:0030955: potassium ion binding3.73E-04
34GO:0016844: strictosidine synthase activity3.73E-04
35GO:0004743: pyruvate kinase activity3.73E-04
36GO:0015117: thiosulfate transmembrane transporter activity5.20E-04
37GO:0008517: folic acid transporter activity5.20E-04
38GO:0004776: succinate-CoA ligase (GDP-forming) activity5.20E-04
39GO:0004566: beta-glucuronidase activity5.20E-04
40GO:0015228: coenzyme A transmembrane transporter activity5.20E-04
41GO:0052739: phosphatidylserine 1-acylhydrolase activity5.20E-04
42GO:0010297: heteropolysaccharide binding5.20E-04
43GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity5.20E-04
44GO:0051724: NAD transporter activity5.20E-04
45GO:0019172: glyoxalase III activity5.20E-04
46GO:0004775: succinate-CoA ligase (ADP-forming) activity5.20E-04
47GO:0019779: Atg8 activating enzyme activity5.20E-04
48GO:1901677: phosphate transmembrane transporter activity5.20E-04
49GO:0017025: TBP-class protein binding8.23E-04
50GO:0008422: beta-glucosidase activity8.39E-04
51GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity8.44E-04
52GO:0005310: dicarboxylic acid transmembrane transporter activity8.44E-04
53GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity8.44E-04
54GO:0015141: succinate transmembrane transporter activity8.44E-04
55GO:0004165: dodecenoyl-CoA delta-isomerase activity1.20E-03
56GO:0052654: L-leucine transaminase activity1.20E-03
57GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.20E-03
58GO:0017077: oxidative phosphorylation uncoupler activity1.20E-03
59GO:0052655: L-valine transaminase activity1.20E-03
60GO:0019201: nucleotide kinase activity1.20E-03
61GO:0015131: oxaloacetate transmembrane transporter activity1.20E-03
62GO:0004416: hydroxyacylglutathione hydrolase activity1.20E-03
63GO:0052656: L-isoleucine transaminase activity1.20E-03
64GO:0004298: threonine-type endopeptidase activity1.21E-03
65GO:0000287: magnesium ion binding1.58E-03
66GO:0004930: G-protein coupled receptor activity1.61E-03
67GO:0004834: tryptophan synthase activity1.61E-03
68GO:0070628: proteasome binding1.61E-03
69GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.61E-03
70GO:0004084: branched-chain-amino-acid transaminase activity1.61E-03
71GO:0004031: aldehyde oxidase activity1.61E-03
72GO:0050302: indole-3-acetaldehyde oxidase activity1.61E-03
73GO:0019776: Atg8 ligase activity1.61E-03
74GO:0010279: indole-3-acetic acid amido synthetase activity1.61E-03
75GO:0004601: peroxidase activity1.63E-03
76GO:0031386: protein tag2.05E-03
77GO:0008374: O-acyltransferase activity2.05E-03
78GO:0080122: AMP transmembrane transporter activity2.05E-03
79GO:0004791: thioredoxin-disulfide reductase activity2.12E-03
80GO:0005509: calcium ion binding2.16E-03
81GO:0035252: UDP-xylosyltransferase activity2.52E-03
82GO:0004518: nuclease activity2.60E-03
83GO:0004656: procollagen-proline 4-dioxygenase activity3.03E-03
84GO:0015217: ADP transmembrane transporter activity3.03E-03
85GO:0004126: cytidine deaminase activity3.03E-03
86GO:0004017: adenylate kinase activity3.03E-03
87GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.03E-03
88GO:0005347: ATP transmembrane transporter activity3.03E-03
89GO:0016597: amino acid binding3.31E-03
90GO:0015140: malate transmembrane transporter activity3.58E-03
91GO:0043295: glutathione binding3.58E-03
92GO:0016798: hydrolase activity, acting on glycosyl bonds4.13E-03
93GO:0102483: scopolin beta-glucosidase activity4.13E-03
94GO:0004033: aldo-keto reductase (NADP) activity4.15E-03
95GO:0008970: phosphatidylcholine 1-acylhydrolase activity4.74E-03
96GO:0003951: NAD+ kinase activity4.74E-03
97GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors5.79E-03
98GO:0004568: chitinase activity6.71E-03
99GO:0008047: enzyme activator activity6.71E-03
100GO:0004364: glutathione transferase activity7.17E-03
101GO:0004177: aminopeptidase activity7.43E-03
102GO:0008559: xenobiotic-transporting ATPase activity7.43E-03
103GO:0015386: potassium:proton antiporter activity7.43E-03
104GO:0008794: arsenate reductase (glutaredoxin) activity7.43E-03
105GO:0015116: sulfate transmembrane transporter activity8.17E-03
106GO:0005198: structural molecule activity8.39E-03
107GO:0004022: alcohol dehydrogenase (NAD) activity8.93E-03
108GO:0005217: intracellular ligand-gated ion channel activity1.05E-02
109GO:0008061: chitin binding1.05E-02
110GO:0004970: ionotropic glutamate receptor activity1.05E-02
111GO:0031418: L-ascorbic acid binding1.22E-02
112GO:0036459: thiol-dependent ubiquitinyl hydrolase activity1.40E-02
113GO:0015035: protein disulfide oxidoreductase activity1.48E-02
114GO:0047134: protein-disulfide reductase activity1.79E-02
115GO:0046872: metal ion binding1.95E-02
116GO:0005199: structural constituent of cell wall1.99E-02
117GO:0046873: metal ion transmembrane transporter activity1.99E-02
118GO:0001085: RNA polymerase II transcription factor binding1.99E-02
119GO:0030170: pyridoxal phosphate binding2.00E-02
120GO:0008565: protein transporter activity2.16E-02
121GO:0004843: thiol-dependent ubiquitin-specific protease activity2.31E-02
122GO:0015297: antiporter activity2.38E-02
123GO:0015385: sodium:proton antiporter activity2.54E-02
124GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.54E-02
125GO:0005506: iron ion binding2.75E-02
126GO:0008237: metallopeptidase activity2.77E-02
127GO:0051213: dioxygenase activity3.01E-02
128GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.16E-02
129GO:0003824: catalytic activity3.22E-02
130GO:0009931: calcium-dependent protein serine/threonine kinase activity3.25E-02
131GO:0004683: calmodulin-dependent protein kinase activity3.38E-02
132GO:0005096: GTPase activator activity3.76E-02
133GO:0016788: hydrolase activity, acting on ester bonds3.92E-02
134GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.03E-02
135GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.03E-02
136GO:0043531: ADP binding4.21E-02
137GO:0003993: acid phosphatase activity4.43E-02
138GO:0008233: peptidase activity4.68E-02
RankGO TermAdjusted P value
1GO:0005829: cytosol4.78E-06
2GO:0000502: proteasome complex1.73E-05
3GO:0005839: proteasome core complex8.68E-05
4GO:0031597: cytosolic proteasome complex1.24E-04
5GO:0031595: nuclear proteasome complex1.64E-04
6GO:0016442: RISC complex2.34E-04
7GO:0008540: proteasome regulatory particle, base subcomplex3.73E-04
8GO:0048471: perinuclear region of cytoplasm5.04E-04
9GO:0009530: primary cell wall8.44E-04
10GO:0046861: glyoxysomal membrane8.44E-04
11GO:0030130: clathrin coat of trans-Golgi network vesicle8.44E-04
12GO:0030132: clathrin coat of coated pit8.44E-04
13GO:0005775: vacuolar lumen1.20E-03
14GO:0005776: autophagosome1.61E-03
15GO:0005737: cytoplasm2.18E-03
16GO:0030904: retromer complex2.52E-03
17GO:0000145: exocyst2.60E-03
18GO:0005778: peroxisomal membrane3.12E-03
19GO:0005777: peroxisome3.21E-03
20GO:0005774: vacuolar membrane3.90E-03
21GO:0005773: vacuole4.13E-03
22GO:0031982: vesicle4.15E-03
23GO:0000421: autophagosome membrane4.15E-03
24GO:0009514: glyoxysome4.74E-03
25GO:0019773: proteasome core complex, alpha-subunit complex4.74E-03
26GO:0005779: integral component of peroxisomal membrane4.74E-03
27GO:0005618: cell wall5.36E-03
28GO:0010494: cytoplasmic stress granule5.37E-03
29GO:0031090: organelle membrane5.37E-03
30GO:0005765: lysosomal membrane7.43E-03
31GO:0008541: proteasome regulatory particle, lid subcomplex7.43E-03
32GO:0005856: cytoskeleton8.39E-03
33GO:0005886: plasma membrane1.04E-02
34GO:0005635: nuclear envelope1.08E-02
35GO:0009536: plastid1.23E-02
36GO:0031410: cytoplasmic vesicle1.50E-02
37GO:0009524: phragmoplast1.90E-02
38GO:0016592: mediator complex2.42E-02
39GO:0032580: Golgi cisterna membrane2.65E-02
40GO:0000932: P-body3.01E-02
41GO:0005788: endoplasmic reticulum lumen3.13E-02
42GO:0005667: transcription factor complex3.25E-02
43GO:0009707: chloroplast outer membrane3.63E-02
44GO:0005643: nuclear pore3.63E-02
45GO:0000325: plant-type vacuole4.03E-02
46GO:0005783: endoplasmic reticulum4.50E-02
47GO:0031902: late endosome membrane4.85E-02
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Gene type



Gene DE type