Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G38520

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
3GO:0033494: ferulate metabolic process0.00E+00
4GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
5GO:0061635: regulation of protein complex stability0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0035674: tricarboxylic acid transmembrane transport0.00E+00
8GO:0005996: monosaccharide metabolic process0.00E+00
9GO:0046471: phosphatidylglycerol metabolic process0.00E+00
10GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
11GO:0009661: chromoplast organization0.00E+00
12GO:0015995: chlorophyll biosynthetic process5.68E-10
13GO:0015979: photosynthesis9.77E-10
14GO:0010207: photosystem II assembly8.87E-08
15GO:0009773: photosynthetic electron transport in photosystem I1.76E-06
16GO:0032544: plastid translation2.19E-05
17GO:0090391: granum assembly2.39E-05
18GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.22E-05
19GO:0071484: cellular response to light intensity5.22E-05
20GO:0010143: cutin biosynthetic process1.19E-04
21GO:0042549: photosystem II stabilization2.05E-04
22GO:0010190: cytochrome b6f complex assembly2.05E-04
23GO:0009768: photosynthesis, light harvesting in photosystem I2.22E-04
24GO:1901259: chloroplast rRNA processing2.77E-04
25GO:0010189: vitamin E biosynthetic process2.77E-04
26GO:0031998: regulation of fatty acid beta-oxidation3.92E-04
27GO:0034337: RNA folding3.92E-04
28GO:0006835: dicarboxylic acid transport3.92E-04
29GO:0005980: glycogen catabolic process3.92E-04
30GO:0046467: membrane lipid biosynthetic process3.92E-04
31GO:0015671: oxygen transport3.92E-04
32GO:0071277: cellular response to calcium ion3.92E-04
33GO:0019544: arginine catabolic process to glutamate3.92E-04
34GO:0080093: regulation of photorespiration3.92E-04
35GO:0010114: response to red light4.27E-04
36GO:0009657: plastid organization5.48E-04
37GO:0006098: pentose-phosphate shunt6.57E-04
38GO:0006779: porphyrin-containing compound biosynthetic process7.75E-04
39GO:0006729: tetrahydrobiopterin biosynthetic process8.49E-04
40GO:0051645: Golgi localization8.49E-04
41GO:0080029: cellular response to boron-containing substance levels8.49E-04
42GO:0006898: receptor-mediated endocytosis8.49E-04
43GO:0060151: peroxisome localization8.49E-04
44GO:0071457: cellular response to ozone8.49E-04
45GO:1904143: positive regulation of carotenoid biosynthetic process8.49E-04
46GO:0006782: protoporphyrinogen IX biosynthetic process9.02E-04
47GO:0006810: transport1.09E-03
48GO:0006094: gluconeogenesis1.34E-03
49GO:0030048: actin filament-based movement1.34E-03
50GO:0005977: glycogen metabolic process1.38E-03
51GO:0006518: peptide metabolic process1.38E-03
52GO:0051646: mitochondrion localization1.38E-03
53GO:0090436: leaf pavement cell development1.38E-03
54GO:0006636: unsaturated fatty acid biosynthetic process1.89E-03
55GO:0009853: photorespiration1.93E-03
56GO:0055114: oxidation-reduction process1.98E-03
57GO:0046713: borate transport1.99E-03
58GO:1902358: sulfate transmembrane transport1.99E-03
59GO:0006020: inositol metabolic process1.99E-03
60GO:0009152: purine ribonucleotide biosynthetic process1.99E-03
61GO:0046653: tetrahydrofolate metabolic process1.99E-03
62GO:0009052: pentose-phosphate shunt, non-oxidative branch1.99E-03
63GO:0009735: response to cytokinin2.37E-03
64GO:0071486: cellular response to high light intensity2.67E-03
65GO:0009765: photosynthesis, light harvesting2.67E-03
66GO:0045727: positive regulation of translation2.67E-03
67GO:0006546: glycine catabolic process2.67E-03
68GO:0006021: inositol biosynthetic process2.67E-03
69GO:0071483: cellular response to blue light2.67E-03
70GO:0010021: amylopectin biosynthetic process2.67E-03
71GO:0032259: methylation3.24E-03
72GO:0006465: signal peptide processing3.42E-03
73GO:0071493: cellular response to UV-B3.42E-03
74GO:0016120: carotene biosynthetic process3.42E-03
75GO:0006564: L-serine biosynthetic process3.42E-03
76GO:0009904: chloroplast accumulation movement3.42E-03
77GO:0010236: plastoquinone biosynthetic process3.42E-03
78GO:0006097: glyoxylate cycle3.42E-03
79GO:0042631: cellular response to water deprivation3.87E-03
80GO:0006364: rRNA processing3.90E-03
81GO:0006751: glutathione catabolic process4.23E-03
82GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.23E-03
83GO:1902456: regulation of stomatal opening4.23E-03
84GO:0009228: thiamine biosynthetic process4.23E-03
85GO:0046855: inositol phosphate dephosphorylation4.23E-03
86GO:0019252: starch biosynthetic process4.81E-03
87GO:0006096: glycolytic process4.83E-03
88GO:0009955: adaxial/abaxial pattern specification5.09E-03
89GO:0071333: cellular response to glucose stimulus5.09E-03
90GO:0009903: chloroplast avoidance movement5.09E-03
91GO:0009854: oxidative photosynthetic carbon pathway5.09E-03
92GO:0009772: photosynthetic electron transport in photosystem II6.02E-03
93GO:0010196: nonphotochemical quenching6.02E-03
94GO:0008272: sulfate transport6.02E-03
95GO:0009769: photosynthesis, light harvesting in photosystem II6.02E-03
96GO:0009645: response to low light intensity stimulus6.02E-03
97GO:0048564: photosystem I assembly7.00E-03
98GO:0009642: response to light intensity7.00E-03
99GO:0009704: de-etiolation7.00E-03
100GO:0050821: protein stabilization7.00E-03
101GO:0010027: thylakoid membrane organization7.46E-03
102GO:0071482: cellular response to light stimulus8.03E-03
103GO:0019430: removal of superoxide radicals8.03E-03
104GO:0009821: alkaloid biosynthetic process9.12E-03
105GO:0010206: photosystem II repair9.12E-03
106GO:0019432: triglyceride biosynthetic process9.12E-03
107GO:0090333: regulation of stomatal closure9.12E-03
108GO:0006783: heme biosynthetic process9.12E-03
109GO:0006754: ATP biosynthetic process9.12E-03
110GO:0005975: carbohydrate metabolic process9.42E-03
111GO:0009416: response to light stimulus9.54E-03
112GO:0018298: protein-chromophore linkage9.76E-03
113GO:0005982: starch metabolic process1.03E-02
114GO:0010218: response to far red light1.08E-02
115GO:0006633: fatty acid biosynthetic process1.09E-02
116GO:0009641: shade avoidance1.14E-02
117GO:0009637: response to blue light1.24E-02
118GO:0043085: positive regulation of catalytic activity1.27E-02
119GO:0006415: translational termination1.27E-02
120GO:0000272: polysaccharide catabolic process1.27E-02
121GO:0018119: peptidyl-cysteine S-nitrosylation1.27E-02
122GO:0034599: cellular response to oxidative stress1.30E-02
123GO:0006790: sulfur compound metabolic process1.40E-02
124GO:0016024: CDP-diacylglycerol biosynthetic process1.40E-02
125GO:0006631: fatty acid metabolic process1.48E-02
126GO:0009725: response to hormone1.53E-02
127GO:0009767: photosynthetic electron transport chain1.53E-02
128GO:0006108: malate metabolic process1.53E-02
129GO:0006006: glucose metabolic process1.53E-02
130GO:0009266: response to temperature stimulus1.66E-02
131GO:0048467: gynoecium development1.66E-02
132GO:0019253: reductive pentose-phosphate cycle1.66E-02
133GO:0007015: actin filament organization1.66E-02
134GO:0010223: secondary shoot formation1.66E-02
135GO:0046854: phosphatidylinositol phosphorylation1.81E-02
136GO:0010025: wax biosynthetic process1.95E-02
137GO:0009658: chloroplast organization2.14E-02
138GO:0042254: ribosome biogenesis2.19E-02
139GO:0006418: tRNA aminoacylation for protein translation2.25E-02
140GO:0019915: lipid storage2.41E-02
141GO:0061077: chaperone-mediated protein folding2.41E-02
142GO:0009269: response to desiccation2.41E-02
143GO:0016114: terpenoid biosynthetic process2.41E-02
144GO:0019748: secondary metabolic process2.57E-02
145GO:0030245: cellulose catabolic process2.57E-02
146GO:0016226: iron-sulfur cluster assembly2.57E-02
147GO:0030433: ubiquitin-dependent ERAD pathway2.57E-02
148GO:0046686: response to cadmium ion2.63E-02
149GO:0071215: cellular response to abscisic acid stimulus2.73E-02
150GO:0080167: response to karrikin2.80E-02
151GO:0009306: protein secretion2.90E-02
152GO:0016117: carotenoid biosynthetic process3.07E-02
153GO:0010118: stomatal movement3.25E-02
154GO:0000413: protein peptidyl-prolyl isomerization3.25E-02
155GO:0009741: response to brassinosteroid3.42E-02
156GO:0006520: cellular amino acid metabolic process3.42E-02
157GO:0071472: cellular response to salt stress3.42E-02
158GO:0010154: fruit development3.42E-02
159GO:0006662: glycerol ether metabolic process3.42E-02
160GO:0015986: ATP synthesis coupled proton transport3.61E-02
161GO:0009791: post-embryonic development3.79E-02
162GO:0009058: biosynthetic process4.06E-02
163GO:0032502: developmental process4.17E-02
164GO:0009630: gravitropism4.17E-02
165GO:1901657: glycosyl compound metabolic process4.36E-02
166GO:0010090: trichome morphogenesis4.36E-02
167GO:0006629: lipid metabolic process4.53E-02
RankGO TermAdjusted P value
1GO:0015142: tricarboxylic acid transmembrane transporter activity0.00E+00
2GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
3GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
4GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
5GO:0045550: geranylgeranyl reductase activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0004822: isoleucine-tRNA ligase activity0.00E+00
8GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
9GO:0008465: glycerate dehydrogenase activity0.00E+00
10GO:0046408: chlorophyll synthetase activity0.00E+00
11GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0019843: rRNA binding3.85E-06
14GO:0016851: magnesium chelatase activity5.22E-05
15GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.22E-05
16GO:0009011: starch synthase activity9.22E-05
17GO:0031409: pigment binding1.66E-04
18GO:0005528: FK506 binding1.92E-04
19GO:0004332: fructose-bisphosphate aldolase activity2.05E-04
20GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.92E-04
21GO:0005344: oxygen transporter activity3.92E-04
22GO:0035671: enone reductase activity3.92E-04
23GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.92E-04
24GO:0008184: glycogen phosphorylase activity3.92E-04
25GO:0004645: phosphorylase activity3.92E-04
26GO:0009374: biotin binding3.92E-04
27GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.92E-04
28GO:0015168: glycerol transmembrane transporter activity3.92E-04
29GO:0031957: very long-chain fatty acid-CoA ligase activity3.92E-04
30GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.44E-04
31GO:0010297: heteropolysaccharide binding8.49E-04
32GO:0003839: gamma-glutamylcyclotransferase activity8.49E-04
33GO:0004617: phosphoglycerate dehydrogenase activity8.49E-04
34GO:0004047: aminomethyltransferase activity8.49E-04
35GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity8.49E-04
36GO:0052832: inositol monophosphate 3-phosphatase activity8.49E-04
37GO:0033201: alpha-1,4-glucan synthase activity8.49E-04
38GO:0018708: thiol S-methyltransferase activity8.49E-04
39GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity8.49E-04
40GO:0008934: inositol monophosphate 1-phosphatase activity8.49E-04
41GO:0052833: inositol monophosphate 4-phosphatase activity8.49E-04
42GO:0019172: glyoxalase III activity8.49E-04
43GO:0019156: isoamylase activity8.49E-04
44GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.49E-04
45GO:0008883: glutamyl-tRNA reductase activity8.49E-04
46GO:0042389: omega-3 fatty acid desaturase activity8.49E-04
47GO:0047372: acylglycerol lipase activity1.04E-03
48GO:0016168: chlorophyll binding1.10E-03
49GO:0008168: methyltransferase activity1.13E-03
50GO:0004565: beta-galactosidase activity1.34E-03
51GO:0008864: formyltetrahydrofolate deformylase activity1.38E-03
52GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.38E-03
53GO:0005310: dicarboxylic acid transmembrane transporter activity1.38E-03
54GO:0004373: glycogen (starch) synthase activity1.38E-03
55GO:0050734: hydroxycinnamoyltransferase activity1.38E-03
56GO:0002161: aminoacyl-tRNA editing activity1.38E-03
57GO:0004751: ribose-5-phosphate isomerase activity1.38E-03
58GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.38E-03
59GO:0003774: motor activity1.51E-03
60GO:0008266: poly(U) RNA binding1.51E-03
61GO:0017077: oxidative phosphorylation uncoupler activity1.99E-03
62GO:0016149: translation release factor activity, codon specific1.99E-03
63GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.99E-03
64GO:0046715: borate transmembrane transporter activity1.99E-03
65GO:0008453: alanine-glyoxylate transaminase activity2.67E-03
66GO:0045430: chalcone isomerase activity2.67E-03
67GO:0015204: urea transmembrane transporter activity2.67E-03
68GO:0051287: NAD binding3.40E-03
69GO:0003989: acetyl-CoA carboxylase activity3.42E-03
70GO:0004556: alpha-amylase activity4.23E-03
71GO:0004462: lactoylglutathione lyase activity4.23E-03
72GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.23E-03
73GO:0004784: superoxide dismutase activity4.23E-03
74GO:0016615: malate dehydrogenase activity4.23E-03
75GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.23E-03
76GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.09E-03
77GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.09E-03
78GO:0102391: decanoate--CoA ligase activity5.09E-03
79GO:0030060: L-malate dehydrogenase activity5.09E-03
80GO:0048038: quinone binding5.15E-03
81GO:0004467: long-chain fatty acid-CoA ligase activity6.02E-03
82GO:0003735: structural constituent of ribosome6.44E-03
83GO:0008271: secondary active sulfate transmembrane transporter activity8.03E-03
84GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.03E-03
85GO:0003747: translation release factor activity9.12E-03
86GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.03E-02
87GO:0016844: strictosidine synthase activity1.03E-02
88GO:0030234: enzyme regulator activity1.14E-02
89GO:0008047: enzyme activator activity1.14E-02
90GO:0015116: sulfate transmembrane transporter activity1.40E-02
91GO:0000049: tRNA binding1.40E-02
92GO:0050661: NADP binding1.42E-02
93GO:0031072: heat shock protein binding1.53E-02
94GO:0003725: double-stranded RNA binding1.53E-02
95GO:0004022: alcohol dehydrogenase (NAD) activity1.53E-02
96GO:0004185: serine-type carboxypeptidase activity1.60E-02
97GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.66E-02
98GO:0042802: identical protein binding1.67E-02
99GO:0051537: 2 iron, 2 sulfur cluster binding1.73E-02
100GO:0051536: iron-sulfur cluster binding2.10E-02
101GO:0008810: cellulase activity2.73E-02
102GO:0005509: calcium ion binding2.78E-02
103GO:0003727: single-stranded RNA binding2.90E-02
104GO:0004812: aminoacyl-tRNA ligase activity3.07E-02
105GO:0047134: protein-disulfide reductase activity3.07E-02
106GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.42E-02
107GO:0004791: thioredoxin-disulfide reductase activity3.61E-02
108GO:0016853: isomerase activity3.61E-02
109GO:0050662: coenzyme binding3.61E-02
110GO:0004872: receptor activity3.79E-02
111GO:0030170: pyridoxal phosphate binding4.27E-02
112GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.36E-02
113GO:0016791: phosphatase activity4.56E-02
114GO:0008483: transaminase activity4.76E-02
115GO:0016597: amino acid binding4.96E-02
116GO:0016491: oxidoreductase activity4.98E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast2.03E-57
4GO:0009535: chloroplast thylakoid membrane8.20E-34
5GO:0009534: chloroplast thylakoid7.98E-29
6GO:0009579: thylakoid9.06E-25
7GO:0009941: chloroplast envelope2.13E-22
8GO:0009543: chloroplast thylakoid lumen3.74E-20
9GO:0009570: chloroplast stroma2.64E-17
10GO:0031977: thylakoid lumen6.73E-17
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.06E-09
12GO:0009654: photosystem II oxygen evolving complex6.14E-09
13GO:0031969: chloroplast membrane1.07E-06
14GO:0019898: extrinsic component of membrane2.46E-06
15GO:0010287: plastoglobule3.21E-06
16GO:0010007: magnesium chelatase complex2.39E-05
17GO:0030095: chloroplast photosystem II1.19E-04
18GO:0005840: ribosome1.26E-04
19GO:0030076: light-harvesting complex1.41E-04
20GO:0009515: granal stacked thylakoid3.92E-04
21GO:0005787: signal peptidase complex3.92E-04
22GO:0009344: nitrite reductase complex [NAD(P)H]3.92E-04
23GO:0009547: plastid ribosome3.92E-04
24GO:0009522: photosystem I5.39E-04
25GO:0000427: plastid-encoded plastid RNA polymerase complex8.49E-04
26GO:0016459: myosin complex9.02E-04
27GO:0033281: TAT protein transport complex1.38E-03
28GO:0009317: acetyl-CoA carboxylase complex1.38E-03
29GO:0048046: apoplast1.85E-03
30GO:0009517: PSII associated light-harvesting complex II2.67E-03
31GO:0009544: chloroplast ATP synthase complex2.67E-03
32GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.23E-03
33GO:0009523: photosystem II4.81E-03
34GO:0009706: chloroplast inner membrane6.12E-03
35GO:0010319: stromule6.64E-03
36GO:0009501: amyloplast7.00E-03
37GO:0031982: vesicle7.00E-03
38GO:0009539: photosystem II reaction center8.03E-03
39GO:0005763: mitochondrial small ribosomal subunit9.12E-03
40GO:0000311: plastid large ribosomal subunit1.40E-02
41GO:0032040: small-subunit processome1.40E-02
42GO:0043234: protein complex1.95E-02
43GO:0042651: thylakoid membrane2.25E-02
44GO:0015935: small ribosomal subunit2.41E-02
45GO:0005777: peroxisome3.73E-02
46GO:0005623: cell3.96E-02
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Gene type



Gene DE type