Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G38510

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0017038: protein import0.00E+00
4GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
7GO:0042407: cristae formation0.00E+00
8GO:0018023: peptidyl-lysine trimethylation0.00E+00
9GO:1905157: positive regulation of photosynthesis0.00E+00
10GO:0031222: arabinan catabolic process0.00E+00
11GO:0006429: leucyl-tRNA aminoacylation0.00E+00
12GO:0061157: mRNA destabilization0.00E+00
13GO:0043392: negative regulation of DNA binding0.00E+00
14GO:0048437: floral organ development1.29E-05
15GO:0009658: chloroplast organization6.24E-05
16GO:0005983: starch catabolic process9.94E-05
17GO:0042372: phylloquinone biosynthetic process3.18E-04
18GO:1901259: chloroplast rRNA processing3.18E-04
19GO:0000476: maturation of 4.5S rRNA4.29E-04
20GO:0000025: maltose catabolic process4.29E-04
21GO:0000967: rRNA 5'-end processing4.29E-04
22GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.29E-04
23GO:1905039: carboxylic acid transmembrane transport4.29E-04
24GO:1905200: gibberellic acid transmembrane transport4.29E-04
25GO:1902478: negative regulation of defense response to bacterium, incompatible interaction4.29E-04
26GO:0080112: seed growth4.29E-04
27GO:0005980: glycogen catabolic process4.29E-04
28GO:0030198: extracellular matrix organization4.29E-04
29GO:0010063: positive regulation of trichoblast fate specification4.29E-04
30GO:0010480: microsporocyte differentiation4.29E-04
31GO:0042371: vitamin K biosynthetic process4.29E-04
32GO:0043686: co-translational protein modification4.29E-04
33GO:0043007: maintenance of rDNA4.29E-04
34GO:0015904: tetracycline transport4.29E-04
35GO:0005991: trehalose metabolic process4.29E-04
36GO:0000023: maltose metabolic process4.29E-04
37GO:0046620: regulation of organ growth5.13E-04
38GO:0006353: DNA-templated transcription, termination5.13E-04
39GO:0009657: plastid organization6.25E-04
40GO:0009629: response to gravity9.27E-04
41GO:1902326: positive regulation of chlorophyll biosynthetic process9.27E-04
42GO:0007154: cell communication9.27E-04
43GO:0018026: peptidyl-lysine monomethylation9.27E-04
44GO:0006423: cysteinyl-tRNA aminoacylation9.27E-04
45GO:0071497: cellular response to freezing9.27E-04
46GO:1900033: negative regulation of trichome patterning9.27E-04
47GO:0042325: regulation of phosphorylation9.27E-04
48GO:1904143: positive regulation of carotenoid biosynthetic process9.27E-04
49GO:0006568: tryptophan metabolic process9.27E-04
50GO:0010024: phytochromobilin biosynthetic process9.27E-04
51GO:0034470: ncRNA processing9.27E-04
52GO:0009773: photosynthetic electron transport in photosystem I1.18E-03
53GO:0010027: thylakoid membrane organization1.21E-03
54GO:0033591: response to L-ascorbic acid1.51E-03
55GO:0006954: inflammatory response1.51E-03
56GO:0034051: negative regulation of plant-type hypersensitive response1.51E-03
57GO:0006788: heme oxidation1.51E-03
58GO:0006696: ergosterol biosynthetic process1.51E-03
59GO:0009052: pentose-phosphate shunt, non-oxidative branch2.18E-03
60GO:0010306: rhamnogalacturonan II biosynthetic process2.18E-03
61GO:0046739: transport of virus in multicellular host2.18E-03
62GO:0006168: adenine salvage2.18E-03
63GO:0016556: mRNA modification2.18E-03
64GO:0043572: plastid fission2.18E-03
65GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.18E-03
66GO:0010321: regulation of vegetative phase change2.18E-03
67GO:0045338: farnesyl diphosphate metabolic process2.18E-03
68GO:0006166: purine ribonucleoside salvage2.18E-03
69GO:0010071: root meristem specification2.18E-03
70GO:0009102: biotin biosynthetic process2.18E-03
71GO:0010601: positive regulation of auxin biosynthetic process2.18E-03
72GO:0006418: tRNA aminoacylation for protein translation2.65E-03
73GO:0010107: potassium ion import2.93E-03
74GO:0022622: root system development2.93E-03
75GO:0006221: pyrimidine nucleotide biosynthetic process2.93E-03
76GO:1901141: regulation of lignin biosynthetic process2.93E-03
77GO:0048629: trichome patterning2.93E-03
78GO:0010109: regulation of photosynthesis2.93E-03
79GO:0042274: ribosomal small subunit biogenesis2.93E-03
80GO:0009686: gibberellin biosynthetic process3.48E-03
81GO:0009416: response to light stimulus3.73E-03
82GO:0032543: mitochondrial translation3.76E-03
83GO:0098719: sodium ion import across plasma membrane3.76E-03
84GO:0006564: L-serine biosynthetic process3.76E-03
85GO:0010236: plastoquinone biosynthetic process3.76E-03
86GO:0031365: N-terminal protein amino acid modification3.76E-03
87GO:0044209: AMP salvage3.76E-03
88GO:0006855: drug transmembrane transport3.86E-03
89GO:0016042: lipid catabolic process4.24E-03
90GO:0042793: transcription from plastid promoter4.65E-03
91GO:0016554: cytidine to uridine editing4.65E-03
92GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.65E-03
93GO:0018258: protein O-linked glycosylation via hydroxyproline4.65E-03
94GO:0000741: karyogamy4.65E-03
95GO:0009643: photosynthetic acclimation4.65E-03
96GO:0010405: arabinogalactan protein metabolic process4.65E-03
97GO:0009959: negative gravitropism4.65E-03
98GO:0009958: positive gravitropism4.78E-03
99GO:0006662: glycerol ether metabolic process4.78E-03
100GO:0010305: leaf vascular tissue pattern formation4.78E-03
101GO:0010197: polar nucleus fusion4.78E-03
102GO:0009741: response to brassinosteroid4.78E-03
103GO:0009646: response to absence of light5.14E-03
104GO:0009082: branched-chain amino acid biosynthetic process5.60E-03
105GO:0006458: 'de novo' protein folding5.60E-03
106GO:0042026: protein refolding5.60E-03
107GO:0048280: vesicle fusion with Golgi apparatus5.60E-03
108GO:0048509: regulation of meristem development5.60E-03
109GO:0009099: valine biosynthetic process5.60E-03
110GO:0030488: tRNA methylation5.60E-03
111GO:0080086: stamen filament development5.60E-03
112GO:0009955: adaxial/abaxial pattern specification5.60E-03
113GO:0048367: shoot system development5.99E-03
114GO:0032502: developmental process6.32E-03
115GO:0032880: regulation of protein localization6.62E-03
116GO:0010161: red light signaling pathway6.62E-03
117GO:0006955: immune response6.62E-03
118GO:0009772: photosynthetic electron transport in photosystem II6.62E-03
119GO:1901657: glycosyl compound metabolic process6.74E-03
120GO:0006605: protein targeting7.71E-03
121GO:0042255: ribosome assembly7.71E-03
122GO:0010078: maintenance of root meristem identity7.71E-03
123GO:0070413: trehalose metabolism in response to stress7.71E-03
124GO:0055075: potassium ion homeostasis7.71E-03
125GO:0052543: callose deposition in cell wall7.71E-03
126GO:0009742: brassinosteroid mediated signaling pathway7.86E-03
127GO:0009097: isoleucine biosynthetic process8.84E-03
128GO:0010497: plasmodesmata-mediated intercellular transport8.84E-03
129GO:0010100: negative regulation of photomorphogenesis8.84E-03
130GO:0032544: plastid translation8.84E-03
131GO:0043562: cellular response to nitrogen levels8.84E-03
132GO:0010099: regulation of photomorphogenesis8.84E-03
133GO:0009821: alkaloid biosynthetic process1.00E-02
134GO:0090333: regulation of stomatal closure1.00E-02
135GO:0046916: cellular transition metal ion homeostasis1.00E-02
136GO:0048507: meristem development1.00E-02
137GO:0006783: heme biosynthetic process1.00E-02
138GO:0000902: cell morphogenesis1.00E-02
139GO:0046685: response to arsenic-containing substance1.00E-02
140GO:0048481: plant ovule development1.12E-02
141GO:0043067: regulation of programmed cell death1.13E-02
142GO:0009098: leucine biosynthetic process1.13E-02
143GO:1900865: chloroplast RNA modification1.13E-02
144GO:0031425: chloroplast RNA processing1.13E-02
145GO:0051453: regulation of intracellular pH1.13E-02
146GO:0009638: phototropism1.13E-02
147GO:0009790: embryo development1.18E-02
148GO:0006896: Golgi to vacuole transport1.26E-02
149GO:0048527: lateral root development1.30E-02
150GO:0009073: aromatic amino acid family biosynthetic process1.40E-02
151GO:0015770: sucrose transport1.40E-02
152GO:0006415: translational termination1.40E-02
153GO:0048229: gametophyte development1.40E-02
154GO:0009684: indoleacetic acid biosynthetic process1.40E-02
155GO:0010015: root morphogenesis1.40E-02
156GO:0000038: very long-chain fatty acid metabolic process1.40E-02
157GO:0034599: cellular response to oxidative stress1.49E-02
158GO:0010588: cotyledon vascular tissue pattern formation1.69E-02
159GO:2000012: regulation of auxin polar transport1.69E-02
160GO:0010628: positive regulation of gene expression1.69E-02
161GO:0010102: lateral root morphogenesis1.69E-02
162GO:0006006: glucose metabolic process1.69E-02
163GO:0010075: regulation of meristem growth1.69E-02
164GO:0009767: photosynthetic electron transport chain1.69E-02
165GO:0048467: gynoecium development1.84E-02
166GO:0006541: glutamine metabolic process1.84E-02
167GO:0010020: chloroplast fission1.84E-02
168GO:0009640: photomorphogenesis1.84E-02
169GO:0009266: response to temperature stimulus1.84E-02
170GO:0009934: regulation of meristem structural organization1.84E-02
171GO:0051707: response to other organism1.84E-02
172GO:0019853: L-ascorbic acid biosynthetic process1.99E-02
173GO:0009901: anther dehiscence1.99E-02
174GO:0010030: positive regulation of seed germination1.99E-02
175GO:0000162: tryptophan biosynthetic process2.15E-02
176GO:0080147: root hair cell development2.32E-02
177GO:0010187: negative regulation of seed germination2.32E-02
178GO:0005992: trehalose biosynthetic process2.32E-02
179GO:0007165: signal transduction2.45E-02
180GO:0019915: lipid storage2.66E-02
181GO:0061077: chaperone-mediated protein folding2.66E-02
182GO:0048278: vesicle docking2.66E-02
183GO:0006857: oligopeptide transport2.66E-02
184GO:0016998: cell wall macromolecule catabolic process2.66E-02
185GO:0006730: one-carbon metabolic process2.84E-02
186GO:0031348: negative regulation of defense response2.84E-02
187GO:0030245: cellulose catabolic process2.84E-02
188GO:0006012: galactose metabolic process3.02E-02
189GO:0009793: embryo development ending in seed dormancy3.03E-02
190GO:0048366: leaf development3.12E-02
191GO:0042127: regulation of cell proliferation3.20E-02
192GO:0009306: protein secretion3.20E-02
193GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.39E-02
194GO:0008284: positive regulation of cell proliferation3.39E-02
195GO:0042147: retrograde transport, endosome to Golgi3.39E-02
196GO:0016117: carotenoid biosynthetic process3.39E-02
197GO:0042631: cellular response to water deprivation3.58E-02
198GO:0042335: cuticle development3.58E-02
199GO:0080022: primary root development3.58E-02
200GO:0010087: phloem or xylem histogenesis3.58E-02
201GO:0048653: anther development3.58E-02
202GO:0006885: regulation of pH3.78E-02
203GO:0010182: sugar mediated signaling pathway3.78E-02
204GO:0048868: pollen tube development3.78E-02
205GO:0010268: brassinosteroid homeostasis3.78E-02
206GO:0061025: membrane fusion3.98E-02
207GO:0006814: sodium ion transport3.98E-02
208GO:0045454: cell redox homeostasis4.15E-02
209GO:0006623: protein targeting to vacuole4.18E-02
210GO:0048825: cotyledon development4.18E-02
211GO:0009556: microsporogenesis4.18E-02
212GO:0009851: auxin biosynthetic process4.18E-02
213GO:0006891: intra-Golgi vesicle-mediated transport4.39E-02
214GO:0016132: brassinosteroid biosynthetic process4.39E-02
215GO:0010583: response to cyclopentenone4.60E-02
216GO:0009058: biosynthetic process4.65E-02
217GO:0009733: response to auxin4.81E-02
218GO:0010090: trichome morphogenesis4.81E-02
RankGO TermAdjusted P value
1GO:0010349: L-galactose dehydrogenase activity0.00E+00
2GO:0005363: maltose transmembrane transporter activity0.00E+00
3GO:0090711: FMN hydrolase activity0.00E+00
4GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
5GO:0004822: isoleucine-tRNA ligase activity0.00E+00
6GO:0004823: leucine-tRNA ligase activity0.00E+00
7GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
8GO:0005201: extracellular matrix structural constituent0.00E+00
9GO:0004076: biotin synthase activity0.00E+00
10GO:0002161: aminoacyl-tRNA editing activity2.82E-05
11GO:1905201: gibberellin transmembrane transporter activity4.29E-04
12GO:0008184: glycogen phosphorylase activity4.29E-04
13GO:0051777: ent-kaurenoate oxidase activity4.29E-04
14GO:0004856: xylulokinase activity4.29E-04
15GO:0042834: peptidoglycan binding4.29E-04
16GO:0004134: 4-alpha-glucanotransferase activity4.29E-04
17GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.29E-04
18GO:0004645: phosphorylase activity4.29E-04
19GO:0050308: sugar-phosphatase activity4.29E-04
20GO:0019203: carbohydrate phosphatase activity4.29E-04
21GO:0005080: protein kinase C binding4.29E-04
22GO:0042586: peptide deformylase activity4.29E-04
23GO:0010313: phytochrome binding4.29E-04
24GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.29E-04
25GO:0050139: nicotinate-N-glucosyltransferase activity4.29E-04
26GO:0004425: indole-3-glycerol-phosphate synthase activity4.29E-04
27GO:0080097: L-tryptophan:pyruvate aminotransferase activity9.27E-04
28GO:0008493: tetracycline transporter activity9.27E-04
29GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.27E-04
30GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity9.27E-04
31GO:0004617: phosphoglycerate dehydrogenase activity9.27E-04
32GO:0004817: cysteine-tRNA ligase activity9.27E-04
33GO:0015386: potassium:proton antiporter activity1.18E-03
34GO:0003913: DNA photolyase activity1.51E-03
35GO:0004148: dihydrolipoyl dehydrogenase activity1.51E-03
36GO:0004751: ribose-5-phosphate isomerase activity1.51E-03
37GO:0016805: dipeptidase activity1.51E-03
38GO:0004049: anthranilate synthase activity1.51E-03
39GO:0015462: ATPase-coupled protein transmembrane transporter activity1.51E-03
40GO:0004180: carboxypeptidase activity1.51E-03
41GO:0016788: hydrolase activity, acting on ester bonds1.58E-03
42GO:0015238: drug transmembrane transporter activity1.81E-03
43GO:0003999: adenine phosphoribosyltransferase activity2.18E-03
44GO:0016149: translation release factor activity, codon specific2.18E-03
45GO:0022890: inorganic cation transmembrane transporter activity2.18E-03
46GO:0009041: uridylate kinase activity2.18E-03
47GO:0052656: L-isoleucine transaminase activity2.18E-03
48GO:0052654: L-leucine transaminase activity2.18E-03
49GO:0052655: L-valine transaminase activity2.18E-03
50GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.18E-03
51GO:0005528: FK506 binding2.40E-03
52GO:0004084: branched-chain-amino-acid transaminase activity2.93E-03
53GO:0004392: heme oxygenase (decyclizing) activity2.93E-03
54GO:0046556: alpha-L-arabinofuranosidase activity2.93E-03
55GO:0004659: prenyltransferase activity2.93E-03
56GO:0016279: protein-lysine N-methyltransferase activity2.93E-03
57GO:0016846: carbon-sulfur lyase activity3.76E-03
58GO:0016773: phosphotransferase activity, alcohol group as acceptor3.76E-03
59GO:0003727: single-stranded RNA binding3.79E-03
60GO:0047134: protein-disulfide reductase activity4.10E-03
61GO:0004812: aminoacyl-tRNA ligase activity4.10E-03
62GO:0004629: phospholipase C activity4.65E-03
63GO:0016208: AMP binding4.65E-03
64GO:0035673: oligopeptide transmembrane transporter activity4.65E-03
65GO:0015081: sodium ion transmembrane transporter activity4.65E-03
66GO:2001070: starch binding4.65E-03
67GO:0080030: methyl indole-3-acetate esterase activity4.65E-03
68GO:1990714: hydroxyproline O-galactosyltransferase activity4.65E-03
69GO:0004791: thioredoxin-disulfide reductase activity5.14E-03
70GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.60E-03
71GO:0004435: phosphatidylinositol phospholipase C activity5.60E-03
72GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.60E-03
73GO:0008195: phosphatidate phosphatase activity5.60E-03
74GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.74E-03
75GO:0004033: aldo-keto reductase (NADP) activity7.71E-03
76GO:0046914: transition metal ion binding8.84E-03
77GO:0008173: RNA methyltransferase activity8.84E-03
78GO:0071949: FAD binding1.00E-02
79GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.00E-02
80GO:0003747: translation release factor activity1.00E-02
81GO:0102483: scopolin beta-glucosidase activity1.01E-02
82GO:0016844: strictosidine synthase activity1.13E-02
83GO:0003723: RNA binding1.16E-02
84GO:0015020: glucuronosyltransferase activity1.26E-02
85GO:0015297: antiporter activity1.38E-02
86GO:0008515: sucrose transmembrane transporter activity1.40E-02
87GO:0008559: xenobiotic-transporting ATPase activity1.40E-02
88GO:0044183: protein binding involved in protein folding1.40E-02
89GO:0000049: tRNA binding1.54E-02
90GO:0015198: oligopeptide transporter activity1.54E-02
91GO:0008422: beta-glucosidase activity1.56E-02
92GO:0000149: SNARE binding1.56E-02
93GO:0003725: double-stranded RNA binding1.69E-02
94GO:0004022: alcohol dehydrogenase (NAD) activity1.69E-02
95GO:0004089: carbonate dehydratase activity1.69E-02
96GO:0019888: protein phosphatase regulator activity1.69E-02
97GO:0003824: catalytic activity1.76E-02
98GO:0004519: endonuclease activity1.82E-02
99GO:0008083: growth factor activity1.84E-02
100GO:0005484: SNAP receptor activity1.84E-02
101GO:0035091: phosphatidylinositol binding1.99E-02
102GO:0051119: sugar transmembrane transporter activity1.99E-02
103GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.15E-02
104GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.15E-02
105GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.15E-02
106GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.15E-02
107GO:0015079: potassium ion transmembrane transporter activity2.49E-02
108GO:0004176: ATP-dependent peptidase activity2.66E-02
109GO:0033612: receptor serine/threonine kinase binding2.66E-02
110GO:0008810: cellulase activity3.02E-02
111GO:0008514: organic anion transmembrane transporter activity3.20E-02
112GO:0015035: protein disulfide oxidoreductase activity3.64E-02
113GO:0052689: carboxylic ester hydrolase activity3.77E-02
114GO:0003713: transcription coactivator activity3.78E-02
115GO:0015299: solute:proton antiporter activity3.98E-02
116GO:0004871: signal transducer activity4.40E-02
117GO:0019843: rRNA binding4.42E-02
118GO:0015385: sodium:proton antiporter activity4.81E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.39E-19
2GO:0009570: chloroplast stroma2.02E-08
3GO:0009508: plastid chromosome4.43E-06
4GO:0009295: nucleoid8.16E-06
5GO:0031969: chloroplast membrane1.13E-04
6GO:0009706: chloroplast inner membrane2.60E-04
7GO:0033281: TAT protein transport complex1.51E-03
8GO:0009535: chloroplast thylakoid membrane1.78E-03
9GO:0042646: plastid nucleoid2.18E-03
10GO:0009544: chloroplast ATP synthase complex2.93E-03
11GO:0012507: ER to Golgi transport vesicle membrane7.71E-03
12GO:0009501: amyloplast7.71E-03
13GO:0009543: chloroplast thylakoid lumen9.72E-03
14GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.00E-02
15GO:0042644: chloroplast nucleoid1.00E-02
16GO:0005789: endoplasmic reticulum membrane1.28E-02
17GO:0009941: chloroplast envelope1.32E-02
18GO:0000159: protein phosphatase type 2A complex1.40E-02
19GO:0005578: proteinaceous extracellular matrix1.69E-02
20GO:0031902: late endosome membrane1.70E-02
21GO:0031201: SNARE complex1.70E-02
22GO:0046658: anchored component of plasma membrane2.09E-02
23GO:0009536: plastid2.18E-02
24GO:0009654: photosystem II oxygen evolving complex2.49E-02
25GO:0005770: late endosome3.78E-02
26GO:0019898: extrinsic component of membrane4.18E-02
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Gene type



Gene DE type