GO Enrichment Analysis of Co-expressed Genes with
AT5G28770
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1902171: regulation of tocopherol cyclase activity | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 4 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 5 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 6 | GO:0009661: chromoplast organization | 0.00E+00 |
| 7 | GO:1905157: positive regulation of photosynthesis | 0.00E+00 |
| 8 | GO:0015843: methylammonium transport | 0.00E+00 |
| 9 | GO:0009657: plastid organization | 1.09E-05 |
| 10 | GO:0009773: photosynthetic electron transport in photosystem I | 3.39E-05 |
| 11 | GO:0080112: seed growth | 2.94E-04 |
| 12 | GO:0000476: maturation of 4.5S rRNA | 2.94E-04 |
| 13 | GO:0043953: protein transport by the Tat complex | 2.94E-04 |
| 14 | GO:0000967: rRNA 5'-end processing | 2.94E-04 |
| 15 | GO:1905039: carboxylic acid transmembrane transport | 2.94E-04 |
| 16 | GO:0006824: cobalt ion transport | 2.94E-04 |
| 17 | GO:1905200: gibberellic acid transmembrane transport | 2.94E-04 |
| 18 | GO:0046467: membrane lipid biosynthetic process | 2.94E-04 |
| 19 | GO:0019544: arginine catabolic process to glutamate | 2.94E-04 |
| 20 | GO:0050821: protein stabilization | 2.94E-04 |
| 21 | GO:0065002: intracellular protein transmembrane transport | 2.94E-04 |
| 22 | GO:0080093: regulation of photorespiration | 2.94E-04 |
| 23 | GO:0031998: regulation of fatty acid beta-oxidation | 2.94E-04 |
| 24 | GO:0034337: RNA folding | 2.94E-04 |
| 25 | GO:0019252: starch biosynthetic process | 3.43E-04 |
| 26 | GO:0006098: pentose-phosphate shunt | 4.36E-04 |
| 27 | GO:0005982: starch metabolic process | 5.16E-04 |
| 28 | GO:0051645: Golgi localization | 6.45E-04 |
| 29 | GO:0006898: receptor-mediated endocytosis | 6.45E-04 |
| 30 | GO:0034755: iron ion transmembrane transport | 6.45E-04 |
| 31 | GO:0071457: cellular response to ozone | 6.45E-04 |
| 32 | GO:0060151: peroxisome localization | 6.45E-04 |
| 33 | GO:0000256: allantoin catabolic process | 6.45E-04 |
| 34 | GO:1904143: positive regulation of carotenoid biosynthetic process | 6.45E-04 |
| 35 | GO:0034470: ncRNA processing | 6.45E-04 |
| 36 | GO:0030048: actin filament-based movement | 8.98E-04 |
| 37 | GO:0006094: gluconeogenesis | 8.98E-04 |
| 38 | GO:0010143: cutin biosynthetic process | 1.01E-03 |
| 39 | GO:0010020: chloroplast fission | 1.01E-03 |
| 40 | GO:0010207: photosystem II assembly | 1.01E-03 |
| 41 | GO:0009405: pathogenesis | 1.04E-03 |
| 42 | GO:0051646: mitochondrion localization | 1.04E-03 |
| 43 | GO:0090391: granum assembly | 1.04E-03 |
| 44 | GO:0010136: ureide catabolic process | 1.04E-03 |
| 45 | GO:0090436: leaf pavement cell development | 1.04E-03 |
| 46 | GO:0006696: ergosterol biosynthetic process | 1.04E-03 |
| 47 | GO:0005977: glycogen metabolic process | 1.04E-03 |
| 48 | GO:0006810: transport | 1.13E-03 |
| 49 | GO:0034599: cellular response to oxidative stress | 1.20E-03 |
| 50 | GO:0006145: purine nucleobase catabolic process | 1.50E-03 |
| 51 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.50E-03 |
| 52 | GO:0015696: ammonium transport | 1.50E-03 |
| 53 | GO:0071786: endoplasmic reticulum tubular network organization | 1.50E-03 |
| 54 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.50E-03 |
| 55 | GO:0045338: farnesyl diphosphate metabolic process | 1.50E-03 |
| 56 | GO:0006020: inositol metabolic process | 1.50E-03 |
| 57 | GO:0071484: cellular response to light intensity | 1.50E-03 |
| 58 | GO:0009152: purine ribonucleotide biosynthetic process | 1.50E-03 |
| 59 | GO:0046653: tetrahydrofolate metabolic process | 1.50E-03 |
| 60 | GO:0010114: response to red light | 1.56E-03 |
| 61 | GO:0019748: secondary metabolic process | 1.83E-03 |
| 62 | GO:0009765: photosynthesis, light harvesting | 2.01E-03 |
| 63 | GO:0015994: chlorophyll metabolic process | 2.01E-03 |
| 64 | GO:0072488: ammonium transmembrane transport | 2.01E-03 |
| 65 | GO:2000122: negative regulation of stomatal complex development | 2.01E-03 |
| 66 | GO:0006021: inositol biosynthetic process | 2.01E-03 |
| 67 | GO:0071483: cellular response to blue light | 2.01E-03 |
| 68 | GO:0010021: amylopectin biosynthetic process | 2.01E-03 |
| 69 | GO:0010037: response to carbon dioxide | 2.01E-03 |
| 70 | GO:0015976: carbon utilization | 2.01E-03 |
| 71 | GO:0071486: cellular response to high light intensity | 2.01E-03 |
| 72 | GO:0071493: cellular response to UV-B | 2.56E-03 |
| 73 | GO:0016120: carotene biosynthetic process | 2.56E-03 |
| 74 | GO:0006564: L-serine biosynthetic process | 2.56E-03 |
| 75 | GO:0009904: chloroplast accumulation movement | 2.56E-03 |
| 76 | GO:0000278: mitotic cell cycle | 2.56E-03 |
| 77 | GO:0006097: glyoxylate cycle | 2.56E-03 |
| 78 | GO:0009658: chloroplast organization | 2.71E-03 |
| 79 | GO:0009791: post-embryonic development | 3.16E-03 |
| 80 | GO:1902456: regulation of stomatal opening | 3.16E-03 |
| 81 | GO:0046855: inositol phosphate dephosphorylation | 3.16E-03 |
| 82 | GO:0010190: cytochrome b6f complex assembly | 3.16E-03 |
| 83 | GO:0009643: photosynthetic acclimation | 3.16E-03 |
| 84 | GO:0042549: photosystem II stabilization | 3.16E-03 |
| 85 | GO:0032502: developmental process | 3.61E-03 |
| 86 | GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity | 3.81E-03 |
| 87 | GO:1901259: chloroplast rRNA processing | 3.81E-03 |
| 88 | GO:0009903: chloroplast avoidance movement | 3.81E-03 |
| 89 | GO:1900056: negative regulation of leaf senescence | 4.49E-03 |
| 90 | GO:0010196: nonphotochemical quenching | 4.49E-03 |
| 91 | GO:0009769: photosynthesis, light harvesting in photosystem II | 4.49E-03 |
| 92 | GO:0009645: response to low light intensity stimulus | 4.49E-03 |
| 93 | GO:0015979: photosynthesis | 4.61E-03 |
| 94 | GO:0009642: response to light intensity | 5.21E-03 |
| 95 | GO:0042255: ribosome assembly | 5.21E-03 |
| 96 | GO:0006353: DNA-templated transcription, termination | 5.21E-03 |
| 97 | GO:0070413: trehalose metabolism in response to stress | 5.21E-03 |
| 98 | GO:0052543: callose deposition in cell wall | 5.21E-03 |
| 99 | GO:0016559: peroxisome fission | 5.21E-03 |
| 100 | GO:0015995: chlorophyll biosynthetic process | 5.75E-03 |
| 101 | GO:0019430: removal of superoxide radicals | 5.98E-03 |
| 102 | GO:0009821: alkaloid biosynthetic process | 6.77E-03 |
| 103 | GO:0006779: porphyrin-containing compound biosynthetic process | 7.60E-03 |
| 104 | GO:0010380: regulation of chlorophyll biosynthetic process | 7.60E-03 |
| 105 | GO:0007346: regulation of mitotic cell cycle | 7.60E-03 |
| 106 | GO:0009853: photorespiration | 8.08E-03 |
| 107 | GO:0006782: protoporphyrinogen IX biosynthetic process | 8.48E-03 |
| 108 | GO:0009641: shade avoidance | 8.48E-03 |
| 109 | GO:0015770: sucrose transport | 9.38E-03 |
| 110 | GO:0072593: reactive oxygen species metabolic process | 9.38E-03 |
| 111 | GO:0043085: positive regulation of catalytic activity | 9.38E-03 |
| 112 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.03E-02 |
| 113 | GO:0006790: sulfur compound metabolic process | 1.03E-02 |
| 114 | GO:0005975: carbohydrate metabolic process | 1.11E-02 |
| 115 | GO:0006108: malate metabolic process | 1.13E-02 |
| 116 | GO:0009767: photosynthetic electron transport chain | 1.13E-02 |
| 117 | GO:0048467: gynoecium development | 1.23E-02 |
| 118 | GO:0007015: actin filament organization | 1.23E-02 |
| 119 | GO:0010223: secondary shoot formation | 1.23E-02 |
| 120 | GO:0009901: anther dehiscence | 1.33E-02 |
| 121 | GO:0046854: phosphatidylinositol phosphorylation | 1.33E-02 |
| 122 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.44E-02 |
| 123 | GO:0042023: DNA endoreduplication | 1.44E-02 |
| 124 | GO:0009833: plant-type primary cell wall biogenesis | 1.44E-02 |
| 125 | GO:0005992: trehalose biosynthetic process | 1.55E-02 |
| 126 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.66E-02 |
| 127 | GO:0006096: glycolytic process | 1.67E-02 |
| 128 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.71E-02 |
| 129 | GO:0019915: lipid storage | 1.78E-02 |
| 130 | GO:0009269: response to desiccation | 1.78E-02 |
| 131 | GO:0003333: amino acid transmembrane transport | 1.78E-02 |
| 132 | GO:0016226: iron-sulfur cluster assembly | 1.90E-02 |
| 133 | GO:0030433: ubiquitin-dependent ERAD pathway | 1.90E-02 |
| 134 | GO:0009624: response to nematode | 2.01E-02 |
| 135 | GO:0009306: protein secretion | 2.14E-02 |
| 136 | GO:0016117: carotenoid biosynthetic process | 2.27E-02 |
| 137 | GO:0071472: cellular response to salt stress | 2.53E-02 |
| 138 | GO:0010154: fruit development | 2.53E-02 |
| 139 | GO:0006520: cellular amino acid metabolic process | 2.53E-02 |
| 140 | GO:0006662: glycerol ether metabolic process | 2.53E-02 |
| 141 | GO:0009058: biosynthetic process | 2.66E-02 |
| 142 | GO:0008152: metabolic process | 3.02E-02 |
| 143 | GO:0009630: gravitropism | 3.08E-02 |
| 144 | GO:0010090: trichome morphogenesis | 3.22E-02 |
| 145 | GO:1901657: glycosyl compound metabolic process | 3.22E-02 |
| 146 | GO:0009567: double fertilization forming a zygote and endosperm | 3.37E-02 |
| 147 | GO:0016126: sterol biosynthetic process | 3.82E-02 |
| 148 | GO:0010027: thylakoid membrane organization | 3.82E-02 |
| 149 | GO:0042128: nitrate assimilation | 4.13E-02 |
| 150 | GO:0016311: dephosphorylation | 4.44E-02 |
| 151 | GO:0016049: cell growth | 4.44E-02 |
| 152 | GO:0030244: cellulose biosynthetic process | 4.61E-02 |
| 153 | GO:0018298: protein-chromophore linkage | 4.61E-02 |
| 154 | GO:0009813: flavonoid biosynthetic process | 4.77E-02 |
| 155 | GO:0006811: ion transport | 4.94E-02 |
| 156 | GO:0010218: response to far red light | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 2 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 3 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 4 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 5 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 6 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 7 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 8 | GO:0009011: starch synthase activity | 4.05E-07 |
| 9 | GO:0004332: fructose-bisphosphate aldolase activity | 1.30E-04 |
| 10 | GO:1905201: gibberellin transmembrane transporter activity | 2.94E-04 |
| 11 | GO:0045486: naringenin 3-dioxygenase activity | 2.94E-04 |
| 12 | GO:0035671: enone reductase activity | 2.94E-04 |
| 13 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 2.94E-04 |
| 14 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 6.45E-04 |
| 15 | GO:0008934: inositol monophosphate 1-phosphatase activity | 6.45E-04 |
| 16 | GO:0052833: inositol monophosphate 4-phosphatase activity | 6.45E-04 |
| 17 | GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity | 6.45E-04 |
| 18 | GO:0019156: isoamylase activity | 6.45E-04 |
| 19 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 6.45E-04 |
| 20 | GO:0047746: chlorophyllase activity | 6.45E-04 |
| 21 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 6.45E-04 |
| 22 | GO:0004617: phosphoglycerate dehydrogenase activity | 6.45E-04 |
| 23 | GO:0052832: inositol monophosphate 3-phosphatase activity | 6.45E-04 |
| 24 | GO:0033201: alpha-1,4-glucan synthase activity | 6.45E-04 |
| 25 | GO:0003774: motor activity | 1.01E-03 |
| 26 | GO:0004373: glycogen (starch) synthase activity | 1.04E-03 |
| 27 | GO:0050734: hydroxycinnamoyltransferase activity | 1.04E-03 |
| 28 | GO:0004848: ureidoglycolate hydrolase activity | 1.04E-03 |
| 29 | GO:0090729: toxin activity | 1.04E-03 |
| 30 | GO:0004751: ribose-5-phosphate isomerase activity | 1.04E-03 |
| 31 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 1.04E-03 |
| 32 | GO:0008864: formyltetrahydrofolate deformylase activity | 1.04E-03 |
| 33 | GO:0016851: magnesium chelatase activity | 1.50E-03 |
| 34 | GO:0022890: inorganic cation transmembrane transporter activity | 1.50E-03 |
| 35 | GO:0008453: alanine-glyoxylate transaminase activity | 2.01E-03 |
| 36 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 2.01E-03 |
| 37 | GO:0003727: single-stranded RNA binding | 2.17E-03 |
| 38 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 3.16E-03 |
| 39 | GO:0004784: superoxide dismutase activity | 3.16E-03 |
| 40 | GO:0004556: alpha-amylase activity | 3.16E-03 |
| 41 | GO:0016615: malate dehydrogenase activity | 3.16E-03 |
| 42 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 3.16E-03 |
| 43 | GO:0008519: ammonium transmembrane transporter activity | 3.16E-03 |
| 44 | GO:2001070: starch binding | 3.16E-03 |
| 45 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 3.81E-03 |
| 46 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.81E-03 |
| 47 | GO:0030060: L-malate dehydrogenase activity | 3.81E-03 |
| 48 | GO:0016791: phosphatase activity | 4.09E-03 |
| 49 | GO:0008135: translation factor activity, RNA binding | 5.98E-03 |
| 50 | GO:0005381: iron ion transmembrane transporter activity | 7.60E-03 |
| 51 | GO:0015174: basic amino acid transmembrane transporter activity | 7.60E-03 |
| 52 | GO:0016844: strictosidine synthase activity | 7.60E-03 |
| 53 | GO:0003746: translation elongation factor activity | 8.08E-03 |
| 54 | GO:0015020: glucuronosyltransferase activity | 8.48E-03 |
| 55 | GO:0008047: enzyme activator activity | 8.48E-03 |
| 56 | GO:0015386: potassium:proton antiporter activity | 9.38E-03 |
| 57 | GO:0008515: sucrose transmembrane transporter activity | 9.38E-03 |
| 58 | GO:0008559: xenobiotic-transporting ATPase activity | 9.38E-03 |
| 59 | GO:0042802: identical protein binding | 9.71E-03 |
| 60 | GO:0004185: serine-type carboxypeptidase activity | 1.04E-02 |
| 61 | GO:0004565: beta-galactosidase activity | 1.13E-02 |
| 62 | GO:0003725: double-stranded RNA binding | 1.13E-02 |
| 63 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.13E-02 |
| 64 | GO:0004089: carbonate dehydratase activity | 1.13E-02 |
| 65 | GO:0031072: heat shock protein binding | 1.13E-02 |
| 66 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.23E-02 |
| 67 | GO:0051119: sugar transmembrane transporter activity | 1.33E-02 |
| 68 | GO:0031409: pigment binding | 1.44E-02 |
| 69 | GO:0005528: FK506 binding | 1.55E-02 |
| 70 | GO:0051536: iron-sulfur cluster binding | 1.55E-02 |
| 71 | GO:0031418: L-ascorbic acid binding | 1.55E-02 |
| 72 | GO:0043130: ubiquitin binding | 1.55E-02 |
| 73 | GO:0005216: ion channel activity | 1.66E-02 |
| 74 | GO:0015079: potassium ion transmembrane transporter activity | 1.66E-02 |
| 75 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.72E-02 |
| 76 | GO:0016760: cellulose synthase (UDP-forming) activity | 2.02E-02 |
| 77 | GO:0016787: hydrolase activity | 2.14E-02 |
| 78 | GO:0047134: protein-disulfide reductase activity | 2.27E-02 |
| 79 | GO:0016491: oxidoreductase activity | 2.46E-02 |
| 80 | GO:0019843: rRNA binding | 2.52E-02 |
| 81 | GO:0015299: solute:proton antiporter activity | 2.66E-02 |
| 82 | GO:0004791: thioredoxin-disulfide reductase activity | 2.66E-02 |
| 83 | GO:0019901: protein kinase binding | 2.80E-02 |
| 84 | GO:0048038: quinone binding | 2.94E-02 |
| 85 | GO:0004672: protein kinase activity | 2.96E-02 |
| 86 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.22E-02 |
| 87 | GO:0016759: cellulose synthase activity | 3.37E-02 |
| 88 | GO:0008237: metallopeptidase activity | 3.51E-02 |
| 89 | GO:0016597: amino acid binding | 3.66E-02 |
| 90 | GO:0016168: chlorophyll binding | 3.97E-02 |
| 91 | GO:0102483: scopolin beta-glucosidase activity | 4.29E-02 |
| 92 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042579: microbody | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 4.07E-31 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 2.22E-10 |
| 5 | GO:0009534: chloroplast thylakoid | 2.48E-09 |
| 6 | GO:0009570: chloroplast stroma | 3.82E-09 |
| 7 | GO:0009941: chloroplast envelope | 3.64E-07 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 9.18E-07 |
| 9 | GO:0033281: TAT protein transport complex | 1.41E-05 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.51E-05 |
| 11 | GO:0031977: thylakoid lumen | 1.52E-05 |
| 12 | GO:0031969: chloroplast membrane | 2.27E-05 |
| 13 | GO:0009579: thylakoid | 1.07E-04 |
| 14 | GO:0010287: plastoglobule | 1.20E-04 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 1.22E-04 |
| 16 | GO:0009344: nitrite reductase complex [NAD(P)H] | 2.94E-04 |
| 17 | GO:0031361: integral component of thylakoid membrane | 2.94E-04 |
| 18 | GO:0019898: extrinsic component of membrane | 3.43E-04 |
| 19 | GO:0016459: myosin complex | 6.02E-04 |
| 20 | GO:0043036: starch grain | 6.45E-04 |
| 21 | GO:0010007: magnesium chelatase complex | 1.04E-03 |
| 22 | GO:0030658: transport vesicle membrane | 1.50E-03 |
| 23 | GO:0071782: endoplasmic reticulum tubular network | 1.50E-03 |
| 24 | GO:0042651: thylakoid membrane | 1.53E-03 |
| 25 | GO:0009517: PSII associated light-harvesting complex II | 2.01E-03 |
| 26 | GO:0009526: plastid envelope | 2.01E-03 |
| 27 | GO:0009523: photosystem II | 3.16E-03 |
| 28 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 5.21E-03 |
| 29 | GO:0031982: vesicle | 5.21E-03 |
| 30 | GO:0009501: amyloplast | 5.21E-03 |
| 31 | GO:0000307: cyclin-dependent protein kinase holoenzyme complex | 5.98E-03 |
| 32 | GO:0048046: apoplast | 9.64E-03 |
| 33 | GO:0005773: vacuole | 9.68E-03 |
| 34 | GO:0032040: small-subunit processome | 1.03E-02 |
| 35 | GO:0009508: plastid chromosome | 1.13E-02 |
| 36 | GO:0030095: chloroplast photosystem II | 1.23E-02 |
| 37 | GO:0030076: light-harvesting complex | 1.33E-02 |
| 38 | GO:0015935: small ribosomal subunit | 1.78E-02 |
| 39 | GO:0009522: photosystem I | 2.66E-02 |
| 40 | GO:0009295: nucleoid | 3.51E-02 |
| 41 | GO:0010319: stromule | 3.51E-02 |
| 42 | GO:0009707: chloroplast outer membrane | 4.61E-02 |
| 43 | GO:0019005: SCF ubiquitin ligase complex | 4.61E-02 |