co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G28640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
3	GO:0017038: protein import	0.00E+00
4	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
5	GO:0010027: thylakoid membrane organization	2.72E-05
6	GO:0006021: inositol biosynthetic process	3.72E-05
7	GO:0009658: chloroplast organization	3.97E-05
8	GO:1901259: chloroplast rRNA processing	1.21E-04
9	GO:0046620: regulation of organ growth	2.03E-04
10	GO:0005991: trehalose metabolic process	2.29E-04
11	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.29E-04
12	GO:0080112: seed growth	2.29E-04
13	GO:0000476: maturation of 4.5S rRNA	2.29E-04
14	GO:0000967: rRNA 5'-end processing	2.29E-04
15	GO:0043953: protein transport by the Tat complex	2.29E-04
16	GO:1905039: carboxylic acid transmembrane transport	2.29E-04
17	GO:1905200: gibberellic acid transmembrane transport	2.29E-04
18	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	2.29E-04
19	GO:0006659: phosphatidylserine biosynthetic process	2.29E-04
20	GO:0065002: intracellular protein transmembrane transport	2.29E-04
21	GO:0043686: co-translational protein modification	2.29E-04
22	GO:0043007: maintenance of rDNA	2.29E-04
23	GO:0032544: plastid translation	2.51E-04
24	GO:0032502: developmental process	2.54E-04
25	GO:0009773: photosynthetic electron transport in photosystem I	4.90E-04
26	GO:0034470: ncRNA processing	5.10E-04
27	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.10E-04
28	GO:0071457: cellular response to ozone	5.10E-04
29	GO:0018026: peptidyl-lysine monomethylation	5.10E-04
30	GO:1900033: negative regulation of trichome patterning	5.10E-04
31	GO:1904143: positive regulation of carotenoid biosynthetic process	5.10E-04
32	GO:0006568: tryptophan metabolic process	5.10E-04
33	GO:0006954: inflammatory response	8.29E-04
34	GO:0034051: negative regulation of plant-type hypersensitive response	8.29E-04
35	GO:0006696: ergosterol biosynthetic process	8.29E-04
36	GO:0071484: cellular response to light intensity	1.18E-03
37	GO:0010601: positive regulation of auxin biosynthetic process	1.18E-03
38	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.18E-03
39	GO:0010306: rhamnogalacturonan II biosynthetic process	1.18E-03
40	GO:0006168: adenine salvage	1.18E-03
41	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.18E-03
42	GO:0045338: farnesyl diphosphate metabolic process	1.18E-03
43	GO:0006166: purine ribonucleoside salvage	1.18E-03
44	GO:0006020: inositol metabolic process	1.18E-03
45	GO:0006855: drug transmembrane transport	1.20E-03
46	GO:0071486: cellular response to high light intensity	1.57E-03
47	GO:0009765: photosynthesis, light harvesting	1.57E-03
48	GO:0006109: regulation of carbohydrate metabolic process	1.57E-03
49	GO:0022622: root system development	1.57E-03
50	GO:0010107: potassium ion import	1.57E-03
51	GO:0048629: trichome patterning	1.57E-03
52	GO:0010109: regulation of photosynthesis	1.57E-03
53	GO:0009958: positive gravitropism	1.92E-03
54	GO:0044209: AMP salvage	2.01E-03
55	GO:0071493: cellular response to UV-B	2.01E-03
56	GO:0098719: sodium ion import across plasma membrane	2.01E-03
57	GO:0006564: L-serine biosynthetic process	2.01E-03
58	GO:0031365: N-terminal protein amino acid modification	2.01E-03
59	GO:0009646: response to absence of light	2.06E-03
60	GO:0019252: starch biosynthetic process	2.21E-03
61	GO:0009416: response to light stimulus	2.39E-03
62	GO:0000741: karyogamy	2.48E-03
63	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.48E-03
64	GO:0046855: inositol phosphate dephosphorylation	2.48E-03
65	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.48E-03
66	GO:1901657: glycosyl compound metabolic process	2.69E-03
67	GO:0009955: adaxial/abaxial pattern specification	2.97E-03
68	GO:0048280: vesicle fusion with Golgi apparatus	2.97E-03
69	GO:0080086: stamen filament development	2.97E-03
70	GO:0006955: immune response	3.50E-03
71	GO:0048437: floral organ development	3.50E-03
72	GO:0009769: photosynthesis, light harvesting in photosystem II	3.50E-03
73	GO:0009645: response to low light intensity stimulus	3.50E-03
74	GO:0032880: regulation of protein localization	3.50E-03
75	GO:0042255: ribosome assembly	4.06E-03
76	GO:0006353: DNA-templated transcription, termination	4.06E-03
77	GO:0070413: trehalose metabolism in response to stress	4.06E-03
78	GO:0006605: protein targeting	4.06E-03
79	GO:0010078: maintenance of root meristem identity	4.06E-03
80	GO:0055075: potassium ion homeostasis	4.06E-03
81	GO:0052543: callose deposition in cell wall	4.06E-03
82	GO:0071482: cellular response to light stimulus	4.65E-03
83	GO:0019430: removal of superoxide radicals	4.65E-03
84	GO:0043562: cellular response to nitrogen levels	4.65E-03
85	GO:0048527: lateral root development	5.13E-03
86	GO:0046685: response to arsenic-containing substance	5.27E-03
87	GO:0009821: alkaloid biosynthetic process	5.27E-03
88	GO:0090333: regulation of stomatal closure	5.27E-03
89	GO:0034599: cellular response to oxidative stress	5.88E-03
90	GO:0009638: phototropism	5.91E-03
91	GO:0051453: regulation of intracellular pH	5.91E-03
92	GO:0005982: starch metabolic process	5.91E-03
93	GO:0006896: Golgi to vacuole transport	6.58E-03
94	GO:0051707: response to other organism	7.25E-03
95	GO:0010015: root morphogenesis	7.28E-03
96	GO:0000038: very long-chain fatty acid metabolic process	7.28E-03
97	GO:0015770: sucrose transport	7.28E-03
98	GO:0072593: reactive oxygen species metabolic process	7.28E-03
99	GO:0006415: translational termination	7.28E-03
100	GO:0043085: positive regulation of catalytic activity	7.28E-03
101	GO:0009684: indoleacetic acid biosynthetic process	7.28E-03
102	GO:0006790: sulfur compound metabolic process	8.00E-03
103	GO:0016024: CDP-diacylglycerol biosynthetic process	8.00E-03
104	GO:0010588: cotyledon vascular tissue pattern formation	8.75E-03
105	GO:2000012: regulation of auxin polar transport	8.75E-03
106	GO:0010628: positive regulation of gene expression	8.75E-03
107	GO:0048467: gynoecium development	9.52E-03
108	GO:0010143: cutin biosynthetic process	9.52E-03
109	GO:0010207: photosystem II assembly	9.52E-03
110	GO:0055114: oxidation-reduction process	1.01E-02
111	GO:0009901: anther dehiscence	1.03E-02
112	GO:0019853: L-ascorbic acid biosynthetic process	1.03E-02
113	GO:0070588: calcium ion transmembrane transport	1.03E-02
114	GO:0046854: phosphatidylinositol phosphorylation	1.03E-02
115	GO:0080167: response to karrikin	1.03E-02
116	GO:0080147: root hair cell development	1.20E-02
117	GO:0005992: trehalose biosynthetic process	1.20E-02
118	GO:0048367: shoot system development	1.20E-02
119	GO:0009768: photosynthesis, light harvesting in photosystem I	1.28E-02
120	GO:0019915: lipid storage	1.37E-02
121	GO:0061077: chaperone-mediated protein folding	1.37E-02
122	GO:0009269: response to desiccation	1.37E-02
123	GO:0016998: cell wall macromolecule catabolic process	1.37E-02
124	GO:0030245: cellulose catabolic process	1.46E-02
125	GO:0016226: iron-sulfur cluster assembly	1.46E-02
126	GO:0006730: one-carbon metabolic process	1.46E-02
127	GO:0031348: negative regulation of defense response	1.46E-02
128	GO:0009686: gibberellin biosynthetic process	1.56E-02
129	GO:0006012: galactose metabolic process	1.56E-02
130	GO:0016042: lipid catabolic process	1.63E-02
131	GO:0016117: carotenoid biosynthetic process	1.75E-02
132	GO:0042147: retrograde transport, endosome to Golgi	1.75E-02
133	GO:0008284: positive regulation of cell proliferation	1.75E-02
134	GO:0042335: cuticle development	1.85E-02
135	GO:0080022: primary root development	1.85E-02
136	GO:0010087: phloem or xylem histogenesis	1.85E-02
137	GO:0010268: brassinosteroid homeostasis	1.95E-02
138	GO:0071472: cellular response to salt stress	1.95E-02
139	GO:0006885: regulation of pH	1.95E-02
140	GO:0006662: glycerol ether metabolic process	1.95E-02
141	GO:0010197: polar nucleus fusion	1.95E-02
142	GO:0010182: sugar mediated signaling pathway	1.95E-02
143	GO:0048868: pollen tube development	1.95E-02
144	GO:0009741: response to brassinosteroid	1.95E-02
145	GO:0006814: sodium ion transport	2.05E-02
146	GO:0006623: protein targeting to vacuole	2.16E-02
147	GO:0009791: post-embryonic development	2.16E-02
148	GO:0048825: cotyledon development	2.16E-02
149	GO:0008654: phospholipid biosynthetic process	2.16E-02
150	GO:0009556: microsporogenesis	2.16E-02
151	GO:0009851: auxin biosynthetic process	2.16E-02
152	GO:0006891: intra-Golgi vesicle-mediated transport	2.27E-02
153	GO:0016132: brassinosteroid biosynthetic process	2.27E-02
154	GO:0010583: response to cyclopentenone	2.37E-02
155	GO:0010090: trichome morphogenesis	2.48E-02
156	GO:0010228: vegetative to reproductive phase transition of meristem	2.53E-02
157	GO:0009567: double fertilization forming a zygote and endosperm	2.60E-02
158	GO:0016125: sterol metabolic process	2.60E-02
159	GO:0010252: auxin homeostasis	2.60E-02
160	GO:0016126: sterol biosynthetic process	2.94E-02
161	GO:0009607: response to biotic stimulus	3.06E-02
162	GO:0009733: response to auxin	3.19E-02
163	GO:0006888: ER to Golgi vesicle-mediated transport	3.31E-02
164	GO:0009555: pollen development	3.48E-02
165	GO:0009817: defense response to fungus, incompatible interaction	3.56E-02
166	GO:0018298: protein-chromophore linkage	3.56E-02
167	GO:0009813: flavonoid biosynthetic process	3.68E-02
168	GO:0009832: plant-type cell wall biogenesis	3.68E-02
169	GO:0010218: response to far red light	3.81E-02
170	GO:0006865: amino acid transport	4.08E-02
171	GO:0009409: response to cold	4.19E-02
172	GO:0016051: carbohydrate biosynthetic process	4.21E-02
173	GO:0009637: response to blue light	4.21E-02
174	GO:0009723: response to ethylene	4.32E-02
175	GO:0005975: carbohydrate metabolic process	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
2	GO:0009011: starch synthase activity	3.72E-05
3	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.29E-04
4	GO:1905201: gibberellin transmembrane transporter activity	2.29E-04
5	GO:0042834: peptidoglycan binding	2.29E-04
6	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.29E-04
7	GO:0051777: ent-kaurenoate oxidase activity	2.29E-04
8	GO:0004856: xylulokinase activity	2.29E-04
9	GO:0042586: peptide deformylase activity	2.29E-04
10	GO:0005080: protein kinase C binding	2.29E-04
11	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.29E-04
12	GO:0052832: inositol monophosphate 3-phosphatase activity	5.10E-04
13	GO:0033201: alpha-1,4-glucan synthase activity	5.10E-04
14	GO:0008934: inositol monophosphate 1-phosphatase activity	5.10E-04
15	GO:0052833: inositol monophosphate 4-phosphatase activity	5.10E-04
16	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	5.10E-04
17	GO:0004512: inositol-3-phosphate synthase activity	5.10E-04
18	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.10E-04
19	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	5.10E-04
20	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.10E-04
21	GO:0004617: phosphoglycerate dehydrogenase activity	5.10E-04
22	GO:0015238: drug transmembrane transporter activity	5.72E-04
23	GO:0015462: ATPase-coupled protein transmembrane transporter activity	8.29E-04
24	GO:0004373: glycogen (starch) synthase activity	8.29E-04
25	GO:0004148: dihydrolipoyl dehydrogenase activity	8.29E-04
26	GO:0004751: ribose-5-phosphate isomerase activity	8.29E-04
27	GO:0005528: FK506 binding	9.81E-04
28	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.18E-03
29	GO:0003999: adenine phosphoribosyltransferase activity	1.18E-03
30	GO:0016149: translation release factor activity, codon specific	1.18E-03
31	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.57E-03
32	GO:0045430: chalcone isomerase activity	1.57E-03
33	GO:0016279: protein-lysine N-methyltransferase activity	1.57E-03
34	GO:0016846: carbon-sulfur lyase activity	2.01E-03
35	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.01E-03
36	GO:0005275: amine transmembrane transporter activity	2.01E-03
37	GO:0004629: phospholipase C activity	2.48E-03
38	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.48E-03
39	GO:0004784: superoxide dismutase activity	2.48E-03
40	GO:0015081: sodium ion transmembrane transporter activity	2.48E-03
41	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.48E-03
42	GO:0016791: phosphatase activity	2.86E-03
43	GO:0008195: phosphatidate phosphatase activity	2.97E-03
44	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.97E-03
45	GO:0004435: phosphatidylinositol phospholipase C activity	2.97E-03
46	GO:0019843: rRNA binding	3.00E-03
47	GO:0102483: scopolin beta-glucosidase activity	4.01E-03
48	GO:0004033: aldo-keto reductase (NADP) activity	4.06E-03
49	GO:0015297: antiporter activity	4.25E-03
50	GO:0003747: translation release factor activity	5.27E-03
51	GO:0016844: strictosidine synthase activity	5.91E-03
52	GO:0008422: beta-glucosidase activity	6.14E-03
53	GO:0008047: enzyme activator activity	6.58E-03
54	GO:0015020: glucuronosyltransferase activity	6.58E-03
55	GO:0015386: potassium:proton antiporter activity	7.28E-03
56	GO:0008515: sucrose transmembrane transporter activity	7.28E-03
57	GO:0008559: xenobiotic-transporting ATPase activity	7.28E-03
58	GO:0016788: hydrolase activity, acting on ester bonds	8.05E-03
59	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.46E-03
60	GO:0003725: double-stranded RNA binding	8.75E-03
61	GO:0004022: alcohol dehydrogenase (NAD) activity	8.75E-03
62	GO:0004089: carbonate dehydratase activity	8.75E-03
63	GO:0005262: calcium channel activity	8.75E-03
64	GO:0008083: growth factor activity	9.52E-03
65	GO:0051119: sugar transmembrane transporter activity	1.03E-02
66	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.11E-02
67	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.11E-02
68	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.11E-02
69	GO:0031409: pigment binding	1.11E-02
70	GO:0004857: enzyme inhibitor activity	1.20E-02
71	GO:0051536: iron-sulfur cluster binding	1.20E-02
72	GO:0008810: cellulase activity	1.56E-02
73	GO:0008514: organic anion transmembrane transporter activity	1.65E-02
74	GO:0003727: single-stranded RNA binding	1.65E-02
75	GO:0047134: protein-disulfide reductase activity	1.75E-02
76	GO:0004252: serine-type endopeptidase activity	1.94E-02
77	GO:0004791: thioredoxin-disulfide reductase activity	2.05E-02
78	GO:0048038: quinone binding	2.27E-02
79	GO:0015385: sodium:proton antiporter activity	2.48E-02
80	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.48E-02
81	GO:0016759: cellulose synthase activity	2.60E-02
82	GO:0016597: amino acid binding	2.83E-02
83	GO:0016168: chlorophyll binding	3.06E-02
84	GO:0003824: catalytic activity	3.09E-02
85	GO:0005215: transporter activity	3.12E-02
86	GO:0008375: acetylglucosaminyltransferase activity	3.19E-02
87	GO:0004721: phosphoprotein phosphatase activity	3.31E-02
88	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.94E-02
89	GO:0050660: flavin adenine dinucleotide binding	4.32E-02
90	GO:0003993: acid phosphatase activity	4.34E-02
91	GO:0000149: SNARE binding	4.48E-02
92	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009571: proplastid stroma	0.00E+00
3	GO:0009507: chloroplast	9.02E-13
4	GO:0009570: chloroplast stroma	1.02E-09
5	GO:0009535: chloroplast thylakoid membrane	8.18E-08
6	GO:0009534: chloroplast thylakoid	2.02E-04
7	GO:0031361: integral component of thylakoid membrane	2.29E-04
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.04E-04
9	GO:0031969: chloroplast membrane	4.39E-04
10	GO:0033281: TAT protein transport complex	8.29E-04
11	GO:0009579: thylakoid	8.45E-04
12	GO:0009517: PSII associated light-harvesting complex II	1.57E-03
13	GO:0009840: chloroplastic endopeptidase Clp complex	2.97E-03
14	GO:0009543: chloroplast thylakoid lumen	3.00E-03
15	GO:0012507: ER to Golgi transport vesicle membrane	4.06E-03
16	GO:0009501: amyloplast	4.06E-03
17	GO:0005763: mitochondrial small ribosomal subunit	5.27E-03
18	GO:0005789: endoplasmic reticulum membrane	5.50E-03
19	GO:0031902: late endosome membrane	6.68E-03
20	GO:0009508: plastid chromosome	8.75E-03
21	GO:0030076: light-harvesting complex	1.03E-02
22	GO:0009532: plastid stroma	1.37E-02
23	GO:0010287: plastoglobule	1.66E-02
24	GO:0016020: membrane	1.71E-02
25	GO:0009941: chloroplast envelope	1.91E-02
26	GO:0005770: late endosome	1.95E-02
27	GO:0009522: photosystem I	2.05E-02
28	GO:0009523: photosystem II	2.16E-02
29	GO:0016021: integral component of membrane	2.50E-02
30	GO:0010319: stromule	2.71E-02
31	GO:0009295: nucleoid	2.71E-02
32	GO:0046658: anchored component of plasma membrane	3.20E-02
33	GO:0009707: chloroplast outer membrane	3.56E-02
34	GO:0000325: plant-type vacuole	3.94E-02
35	GO:0031201: SNARE complex	4.76E-02
36	GO:0031977: thylakoid lumen	4.76E-02