Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G27290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:0035674: tricarboxylic acid transmembrane transport0.00E+00
5GO:0033494: ferulate metabolic process0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0009661: chromoplast organization0.00E+00
8GO:0046471: phosphatidylglycerol metabolic process0.00E+00
9GO:1905157: positive regulation of photosynthesis0.00E+00
10GO:0009773: photosynthetic electron transport in photosystem I3.19E-10
11GO:0015979: photosynthesis1.43E-08
12GO:0015995: chlorophyll biosynthetic process2.00E-08
13GO:0090391: granum assembly6.35E-08
14GO:0010207: photosystem II assembly9.12E-08
15GO:0055114: oxidation-reduction process2.06E-06
16GO:0010196: nonphotochemical quenching1.04E-05
17GO:0032544: plastid translation2.22E-05
18GO:0032259: methylation3.50E-05
19GO:0071484: cellular response to light intensity5.29E-05
20GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.29E-05
21GO:0015994: chlorophyll metabolic process9.33E-05
22GO:0006094: gluconeogenesis1.00E-04
23GO:0010027: thylakoid membrane organization1.21E-04
24GO:0006636: unsaturated fatty acid biosynthetic process1.68E-04
25GO:0042549: photosystem II stabilization2.07E-04
26GO:0010190: cytochrome b6f complex assembly2.07E-04
27GO:0009768: photosynthesis, light harvesting in photosystem I2.25E-04
28GO:1901259: chloroplast rRNA processing2.80E-04
29GO:0006810: transport3.78E-04
30GO:0010028: xanthophyll cycle3.94E-04
31GO:0034337: RNA folding3.94E-04
32GO:0006835: dicarboxylic acid transport3.94E-04
33GO:0000023: maltose metabolic process3.94E-04
34GO:0006047: UDP-N-acetylglucosamine metabolic process3.94E-04
35GO:0000025: maltose catabolic process3.94E-04
36GO:0009090: homoserine biosynthetic process3.94E-04
37GO:0046467: membrane lipid biosynthetic process3.94E-04
38GO:0005980: glycogen catabolic process3.94E-04
39GO:0015671: oxygen transport3.94E-04
40GO:0071277: cellular response to calcium ion3.94E-04
41GO:0080093: regulation of photorespiration3.94E-04
42GO:0019276: UDP-N-acetylgalactosamine metabolic process3.94E-04
43GO:0031998: regulation of fatty acid beta-oxidation3.94E-04
44GO:0010114: response to red light4.34E-04
45GO:0009642: response to light intensity4.53E-04
46GO:0019252: starch biosynthetic process5.97E-04
47GO:0010206: photosystem II repair6.63E-04
48GO:0006098: pentose-phosphate shunt6.63E-04
49GO:0006779: porphyrin-containing compound biosynthetic process7.83E-04
50GO:0005982: starch metabolic process7.83E-04
51GO:0016122: xanthophyll metabolic process8.55E-04
52GO:0030388: fructose 1,6-bisphosphate metabolic process8.55E-04
53GO:0080029: cellular response to boron-containing substance levels8.55E-04
54GO:0005976: polysaccharide metabolic process8.55E-04
55GO:0006898: receptor-mediated endocytosis8.55E-04
56GO:0071457: cellular response to ozone8.55E-04
57GO:1904143: positive regulation of carotenoid biosynthetic process8.55E-04
58GO:0010353: response to trehalose8.55E-04
59GO:0006782: protoporphyrinogen IX biosynthetic process9.10E-04
60GO:0043085: positive regulation of catalytic activity1.05E-03
61GO:0005983: starch catabolic process1.20E-03
62GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.39E-03
63GO:0006000: fructose metabolic process1.39E-03
64GO:0006518: peptide metabolic process1.39E-03
65GO:0010143: cutin biosynthetic process1.53E-03
66GO:0019253: reductive pentose-phosphate cycle1.53E-03
67GO:1902358: sulfate transmembrane transport2.00E-03
68GO:0006020: inositol metabolic process2.00E-03
69GO:0009152: purine ribonucleotide biosynthetic process2.00E-03
70GO:0046653: tetrahydrofolate metabolic process2.00E-03
71GO:0009052: pentose-phosphate shunt, non-oxidative branch2.00E-03
72GO:0046713: borate transport2.00E-03
73GO:0009067: aspartate family amino acid biosynthetic process2.00E-03
74GO:0034599: cellular response to oxidative stress2.07E-03
75GO:0006631: fatty acid metabolic process2.43E-03
76GO:0071486: cellular response to high light intensity2.69E-03
77GO:0009765: photosynthesis, light harvesting2.69E-03
78GO:0006109: regulation of carbohydrate metabolic process2.69E-03
79GO:0045727: positive regulation of translation2.69E-03
80GO:0006021: inositol biosynthetic process2.69E-03
81GO:0071483: cellular response to blue light2.69E-03
82GO:0010021: amylopectin biosynthetic process2.69E-03
83GO:0019748: secondary metabolic process2.81E-03
84GO:0071493: cellular response to UV-B3.44E-03
85GO:0006564: L-serine biosynthetic process3.44E-03
86GO:0016120: carotene biosynthetic process3.44E-03
87GO:0009904: chloroplast accumulation movement3.44E-03
88GO:0006656: phosphatidylcholine biosynthetic process3.44E-03
89GO:0006097: glyoxylate cycle3.44E-03
90GO:0005975: carbohydrate metabolic process3.49E-03
91GO:0006364: rRNA processing3.95E-03
92GO:0006662: glycerol ether metabolic process4.21E-03
93GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.26E-03
94GO:1902456: regulation of stomatal opening4.26E-03
95GO:0009643: photosynthetic acclimation4.26E-03
96GO:0046855: inositol phosphate dephosphorylation4.26E-03
97GO:0010304: PSII associated light-harvesting complex II catabolic process4.26E-03
98GO:0006096: glycolytic process4.89E-03
99GO:0071333: cellular response to glucose stimulus5.13E-03
100GO:0009955: adaxial/abaxial pattern specification5.13E-03
101GO:0009903: chloroplast avoidance movement5.13E-03
102GO:0010189: vitamin E biosynthetic process5.13E-03
103GO:0009854: oxidative photosynthetic carbon pathway5.13E-03
104GO:0009088: threonine biosynthetic process5.13E-03
105GO:1901657: glycosyl compound metabolic process5.93E-03
106GO:0009610: response to symbiotic fungus6.06E-03
107GO:0009395: phospholipid catabolic process6.06E-03
108GO:0009772: photosynthetic electron transport in photosystem II6.06E-03
109GO:1900057: positive regulation of leaf senescence6.06E-03
110GO:0009645: response to low light intensity stimulus6.06E-03
111GO:0008272: sulfate transport6.06E-03
112GO:0009769: photosynthesis, light harvesting in photosystem II6.06E-03
113GO:0030091: protein repair7.05E-03
114GO:0019827: stem cell population maintenance7.05E-03
115GO:0005978: glycogen biosynthetic process7.05E-03
116GO:0009704: de-etiolation7.05E-03
117GO:0070413: trehalose metabolism in response to stress7.05E-03
118GO:0050821: protein stabilization7.05E-03
119GO:0080167: response to karrikin7.31E-03
120GO:0006002: fructose 6-phosphate metabolic process8.09E-03
121GO:0015996: chlorophyll catabolic process8.09E-03
122GO:0019430: removal of superoxide radicals8.09E-03
123GO:0009657: plastid organization8.09E-03
124GO:0009735: response to cytokinin8.31E-03
125GO:0009821: alkaloid biosynthetic process9.18E-03
126GO:0090333: regulation of stomatal closure9.18E-03
127GO:0019432: triglyceride biosynthetic process9.18E-03
128GO:0006783: heme biosynthetic process9.18E-03
129GO:0006754: ATP biosynthetic process9.18E-03
130GO:0018298: protein-chromophore linkage9.86E-03
131GO:0010205: photoinhibition1.03E-02
132GO:0009086: methionine biosynthetic process1.03E-02
133GO:0010218: response to far red light1.09E-02
134GO:0006633: fatty acid biosynthetic process1.10E-02
135GO:0009631: cold acclimation1.14E-02
136GO:0009641: shade avoidance1.15E-02
137GO:0009853: photorespiration1.25E-02
138GO:0009637: response to blue light1.25E-02
139GO:0009089: lysine biosynthetic process via diaminopimelate1.28E-02
140GO:0000272: polysaccharide catabolic process1.28E-02
141GO:0006415: translational termination1.28E-02
142GO:0018119: peptidyl-cysteine S-nitrosylation1.28E-02
143GO:0006790: sulfur compound metabolic process1.41E-02
144GO:0009725: response to hormone1.54E-02
145GO:0005986: sucrose biosynthetic process1.54E-02
146GO:0030048: actin filament-based movement1.54E-02
147GO:0006108: malate metabolic process1.54E-02
148GO:0006006: glucose metabolic process1.54E-02
149GO:0018107: peptidyl-threonine phosphorylation1.54E-02
150GO:0009266: response to temperature stimulus1.68E-02
151GO:0007015: actin filament organization1.68E-02
152GO:0010223: secondary shoot formation1.68E-02
153GO:0005985: sucrose metabolic process1.82E-02
154GO:0046854: phosphatidylinositol phosphorylation1.82E-02
155GO:0019762: glucosinolate catabolic process1.96E-02
156GO:0010025: wax biosynthetic process1.96E-02
157GO:0009409: response to cold2.06E-02
158GO:0005992: trehalose biosynthetic process2.11E-02
159GO:0009658: chloroplast organization2.17E-02
160GO:0061077: chaperone-mediated protein folding2.43E-02
161GO:0009269: response to desiccation2.43E-02
162GO:0016114: terpenoid biosynthetic process2.43E-02
163GO:0016998: cell wall macromolecule catabolic process2.43E-02
164GO:0016226: iron-sulfur cluster assembly2.59E-02
165GO:0030433: ubiquitin-dependent ERAD pathway2.59E-02
166GO:0071215: cellular response to abscisic acid stimulus2.75E-02
167GO:0009306: protein secretion2.92E-02
168GO:0016117: carotenoid biosynthetic process3.09E-02
169GO:0070417: cellular response to cold3.09E-02
170GO:0009416: response to light stimulus3.10E-02
171GO:0042631: cellular response to water deprivation3.27E-02
172GO:0006979: response to oxidative stress3.27E-02
173GO:0000413: protein peptidyl-prolyl isomerization3.27E-02
174GO:0009741: response to brassinosteroid3.45E-02
175GO:0006520: cellular amino acid metabolic process3.45E-02
176GO:0071472: cellular response to salt stress3.45E-02
177GO:0045454: cell redox homeostasis3.55E-02
178GO:0015986: ATP synthesis coupled proton transport3.63E-02
179GO:0009058: biosynthetic process4.10E-02
180GO:0032502: developmental process4.20E-02
181GO:0009630: gravitropism4.20E-02
RankGO TermAdjusted P value
1GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
2GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
3GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
4GO:0030794: (S)-coclaurine-N-methyltransferase activity0.00E+00
5GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
6GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
9GO:0045550: geranylgeranyl reductase activity0.00E+00
10GO:0046422: violaxanthin de-epoxidase activity0.00E+00
11GO:0080082: esculin beta-glucosidase activity0.00E+00
12GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
13GO:0004567: beta-mannosidase activity0.00E+00
14GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
15GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
16GO:0046408: chlorophyll synthetase activity0.00E+00
17GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
18GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
19GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
20GO:0047668: amygdalin beta-glucosidase activity0.00E+00
21GO:0015142: tricarboxylic acid transmembrane transporter activity0.00E+00
22GO:0010297: heteropolysaccharide binding6.94E-06
23GO:0018708: thiol S-methyltransferase activity6.94E-06
24GO:0004373: glycogen (starch) synthase activity2.42E-05
25GO:0008168: methyltransferase activity3.88E-05
26GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.33E-05
27GO:0009011: starch synthase activity9.33E-05
28GO:0004565: beta-galactosidase activity1.00E-04
29GO:0031409: pigment binding1.68E-04
30GO:0004332: fructose-bisphosphate aldolase activity2.07E-04
31GO:0005344: oxygen transporter activity3.94E-04
32GO:0035671: enone reductase activity3.94E-04
33GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity3.94E-04
34GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.94E-04
35GO:0080079: cellobiose glucosidase activity3.94E-04
36GO:0050521: alpha-glucan, water dikinase activity3.94E-04
37GO:0008184: glycogen phosphorylase activity3.94E-04
38GO:0004134: 4-alpha-glucanotransferase activity3.94E-04
39GO:0004645: phosphorylase activity3.94E-04
40GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.94E-04
41GO:0034256: chlorophyll(ide) b reductase activity3.94E-04
42GO:0015168: glycerol transmembrane transporter activity3.94E-04
43GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity3.94E-04
44GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity3.94E-04
45GO:0045485: omega-6 fatty acid desaturase activity3.94E-04
46GO:0031957: very long-chain fatty acid-CoA ligase activity3.94E-04
47GO:0045486: naringenin 3-dioxygenase activity3.94E-04
48GO:0048038: quinone binding6.51E-04
49GO:0004617: phosphoglycerate dehydrogenase activity8.55E-04
50GO:0052832: inositol monophosphate 3-phosphatase activity8.55E-04
51GO:0033201: alpha-1,4-glucan synthase activity8.55E-04
52GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.55E-04
53GO:0003844: 1,4-alpha-glucan branching enzyme activity8.55E-04
54GO:0019172: glyoxalase III activity8.55E-04
55GO:0008934: inositol monophosphate 1-phosphatase activity8.55E-04
56GO:0052833: inositol monophosphate 4-phosphatase activity8.55E-04
57GO:0004412: homoserine dehydrogenase activity8.55E-04
58GO:0000234: phosphoethanolamine N-methyltransferase activity8.55E-04
59GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.55E-04
60GO:0008967: phosphoglycolate phosphatase activity8.55E-04
61GO:0008883: glutamyl-tRNA reductase activity8.55E-04
62GO:0047746: chlorophyllase activity8.55E-04
63GO:0042389: omega-3 fatty acid desaturase activity8.55E-04
64GO:0008047: enzyme activator activity9.10E-04
65GO:0016168: chlorophyll binding1.11E-03
66GO:0010277: chlorophyllide a oxygenase [overall] activity1.39E-03
67GO:0043169: cation binding1.39E-03
68GO:0005310: dicarboxylic acid transmembrane transporter activity1.39E-03
69GO:0050734: hydroxycinnamoyltransferase activity1.39E-03
70GO:0004751: ribose-5-phosphate isomerase activity1.39E-03
71GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.39E-03
72GO:0008864: formyltetrahydrofolate deformylase activity1.39E-03
73GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.39E-03
74GO:0017077: oxidative phosphorylation uncoupler activity2.00E-03
75GO:0004072: aspartate kinase activity2.00E-03
76GO:0019201: nucleotide kinase activity2.00E-03
77GO:0016149: translation release factor activity, codon specific2.00E-03
78GO:0022890: inorganic cation transmembrane transporter activity2.00E-03
79GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.00E-03
80GO:0016851: magnesium chelatase activity2.00E-03
81GO:0046715: borate transmembrane transporter activity2.00E-03
82GO:0003993: acid phosphatase activity2.07E-03
83GO:0050661: NADP binding2.31E-03
84GO:0016491: oxidoreductase activity2.49E-03
85GO:0015204: urea transmembrane transporter activity2.69E-03
86GO:0051537: 2 iron, 2 sulfur cluster binding2.98E-03
87GO:0047134: protein-disulfide reductase activity3.62E-03
88GO:2001070: starch binding4.26E-03
89GO:0004462: lactoylglutathione lyase activity4.26E-03
90GO:0004784: superoxide dismutase activity4.26E-03
91GO:0016615: malate dehydrogenase activity4.26E-03
92GO:0008200: ion channel inhibitor activity4.26E-03
93GO:0004791: thioredoxin-disulfide reductase activity4.53E-03
94GO:0004017: adenylate kinase activity5.13E-03
95GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.13E-03
96GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.13E-03
97GO:0004602: glutathione peroxidase activity5.13E-03
98GO:0102391: decanoate--CoA ligase activity5.13E-03
99GO:0030060: L-malate dehydrogenase activity5.13E-03
100GO:0016788: hydrolase activity, acting on ester bonds5.42E-03
101GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.93E-03
102GO:0004467: long-chain fatty acid-CoA ligase activity6.06E-03
103GO:0016597: amino acid binding7.12E-03
104GO:0008271: secondary active sulfate transmembrane transporter activity8.09E-03
105GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.09E-03
106GO:0019843: rRNA binding8.26E-03
107GO:0102483: scopolin beta-glucosidase activity8.89E-03
108GO:0003747: translation release factor activity9.18E-03
109GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.03E-02
110GO:0016844: strictosidine synthase activity1.03E-02
111GO:0030234: enzyme regulator activity1.15E-02
112GO:0047372: acylglycerol lipase activity1.28E-02
113GO:0015386: potassium:proton antiporter activity1.28E-02
114GO:0008422: beta-glucosidase activity1.37E-02
115GO:0015116: sulfate transmembrane transporter activity1.41E-02
116GO:0004022: alcohol dehydrogenase (NAD) activity1.54E-02
117GO:0031072: heat shock protein binding1.54E-02
118GO:0004185: serine-type carboxypeptidase activity1.62E-02
119GO:0003774: motor activity1.68E-02
120GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.68E-02
121GO:0042802: identical protein binding1.69E-02
122GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.89E-02
123GO:0051287: NAD binding1.96E-02
124GO:0031418: L-ascorbic acid binding2.11E-02
125GO:0004857: enzyme inhibitor activity2.11E-02
126GO:0005528: FK506 binding2.11E-02
127GO:0051536: iron-sulfur cluster binding2.11E-02
128GO:0015079: potassium ion transmembrane transporter activity2.27E-02
129GO:0016779: nucleotidyltransferase activity2.59E-02
130GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.67E-02
131GO:0003727: single-stranded RNA binding2.92E-02
132GO:0015035: protein disulfide oxidoreductase activity3.21E-02
133GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.45E-02
134GO:0016853: isomerase activity3.63E-02
135GO:0015299: solute:proton antiporter activity3.63E-02
136GO:0050662: coenzyme binding3.63E-02
137GO:0004872: receptor activity3.82E-02
138GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.00E-02
139GO:0016762: xyloglucan:xyloglucosyl transferase activity4.01E-02
140GO:0000156: phosphorelay response regulator activity4.39E-02
141GO:0016791: phosphatase activity4.59E-02
142GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.63E-02
143GO:0030246: carbohydrate binding4.76E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009515: granal stacked thylakoid0.00E+00
4GO:0009507: chloroplast3.30E-51
5GO:0009535: chloroplast thylakoid membrane6.51E-39
6GO:0009534: chloroplast thylakoid1.84E-37
7GO:0009941: chloroplast envelope2.76E-20
8GO:0009579: thylakoid2.90E-18
9GO:0009570: chloroplast stroma2.49E-16
10GO:0009543: chloroplast thylakoid lumen5.30E-14
11GO:0031977: thylakoid lumen5.42E-12
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.95E-11
13GO:0031969: chloroplast membrane7.11E-09
14GO:0010287: plastoglobule3.32E-06
15GO:0030076: light-harvesting complex1.43E-04
16GO:0009654: photosystem II oxygen evolving complex2.25E-04
17GO:0042651: thylakoid membrane2.25E-04
18GO:0048046: apoplast2.84E-04
19GO:0009501: amyloplast4.53E-04
20GO:0019898: extrinsic component of membrane5.97E-04
21GO:0000427: plastid-encoded plastid RNA polymerase complex8.55E-04
22GO:0031357: integral component of chloroplast inner membrane8.55E-04
23GO:0009569: chloroplast starch grain8.55E-04
24GO:0010319: stromule8.95E-04
25GO:0010007: magnesium chelatase complex1.39E-03
26GO:0030095: chloroplast photosystem II1.53E-03
27GO:0009517: PSII associated light-harvesting complex II2.69E-03
28GO:0009544: chloroplast ATP synthase complex2.69E-03
29GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.26E-03
30GO:0009522: photosystem I4.53E-03
31GO:0009523: photosystem II4.86E-03
32GO:0031982: vesicle7.05E-03
33GO:0005623: cell8.54E-03
34GO:0008180: COP9 signalosome9.18E-03
35GO:0005763: mitochondrial small ribosomal subunit9.18E-03
36GO:0016459: myosin complex1.15E-02
37GO:0032040: small-subunit processome1.41E-02
38GO:0043234: protein complex1.96E-02
39GO:0015935: small ribosomal subunit2.43E-02
40GO:0009706: chloroplast inner membrane3.11E-02
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Gene type



Gene DE type