GO Enrichment Analysis of Co-expressed Genes with
AT5G25990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 2 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 3 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 4 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 5 | GO:0000476: maturation of 4.5S rRNA | 5.48E-05 |
| 6 | GO:0009443: pyridoxal 5'-phosphate salvage | 5.48E-05 |
| 7 | GO:0000967: rRNA 5'-end processing | 5.48E-05 |
| 8 | GO:0034755: iron ion transmembrane transport | 1.34E-04 |
| 9 | GO:0034470: ncRNA processing | 1.34E-04 |
| 10 | GO:0006954: inflammatory response | 2.28E-04 |
| 11 | GO:0005977: glycogen metabolic process | 2.28E-04 |
| 12 | GO:0046653: tetrahydrofolate metabolic process | 3.33E-04 |
| 13 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 3.33E-04 |
| 14 | GO:0006168: adenine salvage | 3.33E-04 |
| 15 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.33E-04 |
| 16 | GO:0006166: purine ribonucleoside salvage | 3.33E-04 |
| 17 | GO:0009152: purine ribonucleotide biosynthetic process | 3.33E-04 |
| 18 | GO:0019252: starch biosynthetic process | 3.37E-04 |
| 19 | GO:0032502: developmental process | 3.85E-04 |
| 20 | GO:0009765: photosynthesis, light harvesting | 4.45E-04 |
| 21 | GO:0010107: potassium ion import | 4.45E-04 |
| 22 | GO:0010021: amylopectin biosynthetic process | 4.45E-04 |
| 23 | GO:0006465: signal peptide processing | 5.66E-04 |
| 24 | GO:0098719: sodium ion import across plasma membrane | 5.66E-04 |
| 25 | GO:0006564: L-serine biosynthetic process | 5.66E-04 |
| 26 | GO:0044209: AMP salvage | 5.66E-04 |
| 27 | GO:0010190: cytochrome b6f complex assembly | 6.92E-04 |
| 28 | GO:0009769: photosynthesis, light harvesting in photosystem II | 9.62E-04 |
| 29 | GO:0009645: response to low light intensity stimulus | 9.62E-04 |
| 30 | GO:0015979: photosynthesis | 1.03E-03 |
| 31 | GO:0010114: response to red light | 1.07E-03 |
| 32 | GO:0048564: photosystem I assembly | 1.11E-03 |
| 33 | GO:0042255: ribosome assembly | 1.11E-03 |
| 34 | GO:0006353: DNA-templated transcription, termination | 1.11E-03 |
| 35 | GO:0010078: maintenance of root meristem identity | 1.11E-03 |
| 36 | GO:0055075: potassium ion homeostasis | 1.11E-03 |
| 37 | GO:0009657: plastid organization | 1.26E-03 |
| 38 | GO:0043562: cellular response to nitrogen levels | 1.26E-03 |
| 39 | GO:0006098: pentose-phosphate shunt | 1.41E-03 |
| 40 | GO:0009821: alkaloid biosynthetic process | 1.41E-03 |
| 41 | GO:0090333: regulation of stomatal closure | 1.41E-03 |
| 42 | GO:0051453: regulation of intracellular pH | 1.58E-03 |
| 43 | GO:0005982: starch metabolic process | 1.58E-03 |
| 44 | GO:0006535: cysteine biosynthetic process from serine | 1.75E-03 |
| 45 | GO:0019684: photosynthesis, light reaction | 1.93E-03 |
| 46 | GO:0006879: cellular iron ion homeostasis | 1.93E-03 |
| 47 | GO:0009684: indoleacetic acid biosynthetic process | 1.93E-03 |
| 48 | GO:0010588: cotyledon vascular tissue pattern formation | 2.30E-03 |
| 49 | GO:0006094: gluconeogenesis | 2.30E-03 |
| 50 | GO:0009767: photosynthetic electron transport chain | 2.30E-03 |
| 51 | GO:0048467: gynoecium development | 2.49E-03 |
| 52 | GO:0010207: photosystem II assembly | 2.49E-03 |
| 53 | GO:0009058: biosynthetic process | 2.63E-03 |
| 54 | GO:0006636: unsaturated fatty acid biosynthetic process | 2.90E-03 |
| 55 | GO:0019344: cysteine biosynthetic process | 3.11E-03 |
| 56 | GO:0009768: photosynthesis, light harvesting in photosystem I | 3.32E-03 |
| 57 | GO:0019915: lipid storage | 3.54E-03 |
| 58 | GO:0009269: response to desiccation | 3.54E-03 |
| 59 | GO:0030433: ubiquitin-dependent ERAD pathway | 3.77E-03 |
| 60 | GO:0008380: RNA splicing | 4.08E-03 |
| 61 | GO:0080022: primary root development | 4.71E-03 |
| 62 | GO:0010087: phloem or xylem histogenesis | 4.71E-03 |
| 63 | GO:0009958: positive gravitropism | 4.96E-03 |
| 64 | GO:0006885: regulation of pH | 4.96E-03 |
| 65 | GO:0006814: sodium ion transport | 5.22E-03 |
| 66 | GO:0055114: oxidation-reduction process | 5.42E-03 |
| 67 | GO:0048825: cotyledon development | 5.48E-03 |
| 68 | GO:0009851: auxin biosynthetic process | 5.48E-03 |
| 69 | GO:0016311: dephosphorylation | 8.60E-03 |
| 70 | GO:0009817: defense response to fungus, incompatible interaction | 8.91E-03 |
| 71 | GO:0018298: protein-chromophore linkage | 8.91E-03 |
| 72 | GO:0010218: response to far red light | 9.54E-03 |
| 73 | GO:0048527: lateral root development | 9.86E-03 |
| 74 | GO:0006397: mRNA processing | 1.01E-02 |
| 75 | GO:0009853: photorespiration | 1.05E-02 |
| 76 | GO:0009637: response to blue light | 1.05E-02 |
| 77 | GO:0006810: transport | 1.16E-02 |
| 78 | GO:0051707: response to other organism | 1.26E-02 |
| 79 | GO:0000209: protein polyubiquitination | 1.29E-02 |
| 80 | GO:0009644: response to high light intensity | 1.33E-02 |
| 81 | GO:0006417: regulation of translation | 1.67E-02 |
| 82 | GO:0006096: glycolytic process | 1.75E-02 |
| 83 | GO:0048367: shoot system development | 1.79E-02 |
| 84 | GO:0006396: RNA processing | 2.04E-02 |
| 85 | GO:0006413: translational initiation | 2.80E-02 |
| 86 | GO:0045944: positive regulation of transcription from RNA polymerase II promoter | 3.80E-02 |
| 87 | GO:0009733: response to auxin | 3.90E-02 |
| 88 | GO:0009658: chloroplast organization | 4.01E-02 |
| 89 | GO:0009723: response to ethylene | 4.45E-02 |
| 90 | GO:0080167: response to karrikin | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 2 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 3 | GO:0033201: alpha-1,4-glucan synthase activity | 1.34E-04 |
| 4 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 1.34E-04 |
| 5 | GO:0019156: isoamylase activity | 1.34E-04 |
| 6 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 1.34E-04 |
| 7 | GO:0004617: phosphoglycerate dehydrogenase activity | 1.34E-04 |
| 8 | GO:0004373: glycogen (starch) synthase activity | 2.28E-04 |
| 9 | GO:0004751: ribose-5-phosphate isomerase activity | 2.28E-04 |
| 10 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 2.28E-04 |
| 11 | GO:0070402: NADPH binding | 2.28E-04 |
| 12 | GO:0008864: formyltetrahydrofolate deformylase activity | 2.28E-04 |
| 13 | GO:0003727: single-stranded RNA binding | 2.29E-04 |
| 14 | GO:0003999: adenine phosphoribosyltransferase activity | 3.33E-04 |
| 15 | GO:0004045: aminoacyl-tRNA hydrolase activity | 4.45E-04 |
| 16 | GO:0009011: starch synthase activity | 4.45E-04 |
| 17 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 4.45E-04 |
| 18 | GO:0016846: carbon-sulfur lyase activity | 5.66E-04 |
| 19 | GO:0004332: fructose-bisphosphate aldolase activity | 6.92E-04 |
| 20 | GO:0004556: alpha-amylase activity | 6.92E-04 |
| 21 | GO:0015081: sodium ion transmembrane transporter activity | 6.92E-04 |
| 22 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 8.25E-04 |
| 23 | GO:0004124: cysteine synthase activity | 8.25E-04 |
| 24 | GO:0004033: aldo-keto reductase (NADP) activity | 1.11E-03 |
| 25 | GO:0005381: iron ion transmembrane transporter activity | 1.58E-03 |
| 26 | GO:0016844: strictosidine synthase activity | 1.58E-03 |
| 27 | GO:0015386: potassium:proton antiporter activity | 1.93E-03 |
| 28 | GO:0016491: oxidoreductase activity | 2.09E-03 |
| 29 | GO:0004022: alcohol dehydrogenase (NAD) activity | 2.30E-03 |
| 30 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 2.49E-03 |
| 31 | GO:0031409: pigment binding | 2.90E-03 |
| 32 | GO:0016788: hydrolase activity, acting on ester bonds | 5.38E-03 |
| 33 | GO:0048038: quinone binding | 5.74E-03 |
| 34 | GO:0015385: sodium:proton antiporter activity | 6.27E-03 |
| 35 | GO:0016597: amino acid binding | 7.11E-03 |
| 36 | GO:0016168: chlorophyll binding | 7.69E-03 |
| 37 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 8.60E-03 |
| 38 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.09E-02 |
| 39 | GO:0003993: acid phosphatase activity | 1.09E-02 |
| 40 | GO:0043621: protein self-association | 1.33E-02 |
| 41 | GO:0051287: NAD binding | 1.44E-02 |
| 42 | GO:0003690: double-stranded DNA binding | 1.59E-02 |
| 43 | GO:0031625: ubiquitin protein ligase binding | 1.67E-02 |
| 44 | GO:0019843: rRNA binding | 2.34E-02 |
| 45 | GO:0005509: calcium ion binding | 3.21E-02 |
| 46 | GO:0003743: translation initiation factor activity | 3.29E-02 |
| 47 | GO:0003824: catalytic activity | 3.82E-02 |
| 48 | GO:0005215: transporter activity | 3.85E-02 |
| 49 | GO:0008233: peptidase activity | 4.62E-02 |
| 50 | GO:0061630: ubiquitin protein ligase activity | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 4.05E-12 |
| 2 | GO:0009654: photosystem II oxygen evolving complex | 2.92E-06 |
| 3 | GO:0005787: signal peptidase complex | 5.48E-05 |
| 4 | GO:0009344: nitrite reductase complex [NAD(P)H] | 5.48E-05 |
| 5 | GO:0030095: chloroplast photosystem II | 9.76E-05 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 2.19E-04 |
| 7 | GO:0010287: plastoglobule | 2.36E-04 |
| 8 | GO:0009941: chloroplast envelope | 2.39E-04 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 2.53E-04 |
| 10 | GO:0009522: photosystem I | 3.14E-04 |
| 11 | GO:0019898: extrinsic component of membrane | 3.37E-04 |
| 12 | GO:0009517: PSII associated light-harvesting complex II | 4.45E-04 |
| 13 | GO:0009579: thylakoid | 6.28E-04 |
| 14 | GO:0031977: thylakoid lumen | 9.88E-04 |
| 15 | GO:0009501: amyloplast | 1.11E-03 |
| 16 | GO:0009539: photosystem II reaction center | 1.26E-03 |
| 17 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.41E-03 |
| 18 | GO:0009570: chloroplast stroma | 1.93E-03 |
| 19 | GO:0009508: plastid chromosome | 2.30E-03 |
| 20 | GO:0030076: light-harvesting complex | 2.70E-03 |
| 21 | GO:0009523: photosystem II | 5.48E-03 |
| 22 | GO:0031969: chloroplast membrane | 6.54E-03 |
| 23 | GO:0009295: nucleoid | 6.83E-03 |
| 24 | GO:0030529: intracellular ribonucleoprotein complex | 7.40E-03 |
| 25 | GO:0009534: chloroplast thylakoid | 2.08E-02 |
| 26 | GO:0005874: microtubule | 4.56E-02 |