Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G25940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010055: atrichoblast differentiation0.00E+00
2GO:1902001: fatty acid transmembrane transport0.00E+00
3GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
4GO:1900067: regulation of cellular response to alkaline pH0.00E+00
5GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
6GO:0002376: immune system process0.00E+00
7GO:0015690: aluminum cation transport0.00E+00
8GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
9GO:0046865: terpenoid transport0.00E+00
10GO:0018063: cytochrome c-heme linkage0.00E+00
11GO:0010324: membrane invagination0.00E+00
12GO:0006952: defense response7.19E-09
13GO:0010112: regulation of systemic acquired resistance2.57E-08
14GO:0006979: response to oxidative stress3.20E-07
15GO:0071456: cellular response to hypoxia2.14E-06
16GO:0009753: response to jasmonic acid7.87E-06
17GO:0009611: response to wounding1.19E-05
18GO:0019725: cellular homeostasis1.34E-05
19GO:0051707: response to other organism1.59E-05
20GO:0009751: response to salicylic acid3.61E-05
21GO:0010186: positive regulation of cellular defense response4.49E-05
22GO:0006012: galactose metabolic process5.70E-05
23GO:0010200: response to chitin6.68E-05
24GO:0042391: regulation of membrane potential9.09E-05
25GO:1903507: negative regulation of nucleic acid-templated transcription1.42E-04
26GO:0060548: negative regulation of cell death1.64E-04
27GO:0045227: capsule polysaccharide biosynthetic process1.64E-04
28GO:0033358: UDP-L-arabinose biosynthetic process1.64E-04
29GO:0009636: response to toxic substance1.94E-04
30GO:0031347: regulation of defense response2.25E-04
31GO:0009225: nucleotide-sugar metabolic process2.92E-04
32GO:0010150: leaf senescence3.17E-04
33GO:0009643: photosynthetic acclimation3.52E-04
34GO:0032107: regulation of response to nutrient levels5.54E-04
35GO:0048508: embryonic meristem development5.54E-04
36GO:0015760: glucose-6-phosphate transport5.54E-04
37GO:0046256: 2,4,6-trinitrotoluene catabolic process5.54E-04
38GO:0019567: arabinose biosynthetic process5.54E-04
39GO:0080173: male-female gamete recognition during double fertilization5.54E-04
40GO:0033306: phytol metabolic process5.54E-04
41GO:0009270: response to humidity5.54E-04
42GO:0009700: indole phytoalexin biosynthetic process5.54E-04
43GO:0050691: regulation of defense response to virus by host5.54E-04
44GO:0034214: protein hexamerization5.54E-04
45GO:1990542: mitochondrial transmembrane transport5.54E-04
46GO:2000022: regulation of jasmonic acid mediated signaling pathway5.66E-04
47GO:0009625: response to insect6.32E-04
48GO:0030091: protein repair7.46E-04
49GO:0010120: camalexin biosynthetic process9.08E-04
50GO:0006468: protein phosphorylation1.04E-03
51GO:0006098: pentose-phosphate shunt1.09E-03
52GO:0015914: phospholipid transport1.19E-03
53GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.19E-03
54GO:0009838: abscission1.19E-03
55GO:0006527: arginine catabolic process1.19E-03
56GO:0080181: lateral root branching1.19E-03
57GO:0055088: lipid homeostasis1.19E-03
58GO:0019521: D-gluconate metabolic process1.19E-03
59GO:0010115: regulation of abscisic acid biosynthetic process1.19E-03
60GO:0015865: purine nucleotide transport1.19E-03
61GO:0015908: fatty acid transport1.19E-03
62GO:0010271: regulation of chlorophyll catabolic process1.19E-03
63GO:0044419: interspecies interaction between organisms1.19E-03
64GO:0009945: radial axis specification1.19E-03
65GO:0015712: hexose phosphate transport1.19E-03
66GO:0051258: protein polymerization1.19E-03
67GO:0071668: plant-type cell wall assembly1.19E-03
68GO:0009446: putrescine biosynthetic process1.19E-03
69GO:0010193: response to ozone1.23E-03
70GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.28E-03
71GO:0042742: defense response to bacterium1.60E-03
72GO:0007166: cell surface receptor signaling pathway1.79E-03
73GO:0009737: response to abscisic acid1.85E-03
74GO:0015692: lead ion transport1.96E-03
75GO:0015695: organic cation transport1.96E-03
76GO:0015714: phosphoenolpyruvate transport1.96E-03
77GO:0080168: abscisic acid transport1.96E-03
78GO:1900055: regulation of leaf senescence1.96E-03
79GO:0006954: inflammatory response1.96E-03
80GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process1.96E-03
81GO:0034051: negative regulation of plant-type hypersensitive response1.96E-03
82GO:0010498: proteasomal protein catabolic process1.96E-03
83GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.96E-03
84GO:0035436: triose phosphate transmembrane transport1.96E-03
85GO:0080163: regulation of protein serine/threonine phosphatase activity1.96E-03
86GO:0045793: positive regulation of cell size1.96E-03
87GO:0050832: defense response to fungus2.07E-03
88GO:0010116: positive regulation of abscisic acid biosynthetic process2.84E-03
89GO:0048194: Golgi vesicle budding2.84E-03
90GO:0006020: inositol metabolic process2.84E-03
91GO:0046902: regulation of mitochondrial membrane permeability2.84E-03
92GO:0010731: protein glutathionylation2.84E-03
93GO:0015696: ammonium transport2.84E-03
94GO:0051289: protein homotetramerization2.84E-03
95GO:0001676: long-chain fatty acid metabolic process2.84E-03
96GO:0009407: toxin catabolic process3.15E-03
97GO:0080147: root hair cell development3.53E-03
98GO:2000377: regulation of reactive oxygen species metabolic process3.53E-03
99GO:0009867: jasmonic acid mediated signaling pathway3.77E-03
100GO:1901141: regulation of lignin biosynthetic process3.83E-03
101GO:0010109: regulation of photosynthesis3.83E-03
102GO:0048638: regulation of developmental growth3.83E-03
103GO:0072488: ammonium transmembrane transport3.83E-03
104GO:0015713: phosphoglycerate transport3.83E-03
105GO:0008295: spermidine biosynthetic process3.83E-03
106GO:0080167: response to karrikin4.47E-03
107GO:0016094: polyprenol biosynthetic process4.91E-03
108GO:0034052: positive regulation of plant-type hypersensitive response4.91E-03
109GO:0010264: myo-inositol hexakisphosphate biosynthetic process6.09E-03
110GO:0010256: endomembrane system organization6.09E-03
111GO:0033365: protein localization to organelle6.09E-03
112GO:0006596: polyamine biosynthetic process6.09E-03
113GO:0009117: nucleotide metabolic process6.09E-03
114GO:0006574: valine catabolic process6.09E-03
115GO:0009759: indole glucosinolate biosynthetic process6.09E-03
116GO:0006855: drug transmembrane transport6.35E-03
117GO:0042372: phylloquinone biosynthetic process7.36E-03
118GO:0045926: negative regulation of growth7.36E-03
119GO:0009942: longitudinal axis specification7.36E-03
120GO:0009094: L-phenylalanine biosynthetic process7.36E-03
121GO:0009646: response to absence of light7.61E-03
122GO:0009617: response to bacterium7.81E-03
123GO:0009749: response to glucose8.17E-03
124GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway8.71E-03
125GO:0043090: amino acid import8.71E-03
126GO:0071446: cellular response to salicylic acid stimulus8.71E-03
127GO:1900056: negative regulation of leaf senescence8.71E-03
128GO:1900057: positive regulation of leaf senescence8.71E-03
129GO:0000122: negative regulation of transcription from RNA polymerase II promoter8.71E-03
130GO:0050829: defense response to Gram-negative bacterium8.71E-03
131GO:1902074: response to salt8.71E-03
132GO:0009787: regulation of abscisic acid-activated signaling pathway1.01E-02
133GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.01E-02
134GO:0009819: drought recovery1.01E-02
135GO:0043068: positive regulation of programmed cell death1.01E-02
136GO:0009626: plant-type hypersensitive response1.03E-02
137GO:0007165: signal transduction1.04E-02
138GO:0009414: response to water deprivation1.14E-02
139GO:0017004: cytochrome complex assembly1.17E-02
140GO:2000031: regulation of salicylic acid mediated signaling pathway1.17E-02
141GO:0010208: pollen wall assembly1.17E-02
142GO:0006997: nucleus organization1.17E-02
143GO:0010204: defense response signaling pathway, resistance gene-independent1.17E-02
144GO:0030968: endoplasmic reticulum unfolded protein response1.17E-02
145GO:0006970: response to osmotic stress1.30E-02
146GO:0009835: fruit ripening1.33E-02
147GO:0046916: cellular transition metal ion homeostasis1.33E-02
148GO:0019432: triglyceride biosynthetic process1.33E-02
149GO:0009723: response to ethylene1.45E-02
150GO:0009638: phototropism1.49E-02
151GO:0090332: stomatal closure1.49E-02
152GO:0048268: clathrin coat assembly1.49E-02
153GO:0010380: regulation of chlorophyll biosynthetic process1.49E-02
154GO:0051555: flavonol biosynthetic process1.67E-02
155GO:0009870: defense response signaling pathway, resistance gene-dependent1.67E-02
156GO:0019538: protein metabolic process1.67E-02
157GO:0006032: chitin catabolic process1.67E-02
158GO:0010311: lateral root formation1.75E-02
159GO:0009684: indoleacetic acid biosynthetic process1.85E-02
160GO:0019684: photosynthesis, light reaction1.85E-02
161GO:0009089: lysine biosynthetic process via diaminopimelate1.85E-02
162GO:0072593: reactive oxygen species metabolic process1.85E-02
163GO:0009682: induced systemic resistance1.85E-02
164GO:0048229: gametophyte development1.85E-02
165GO:0048527: lateral root development1.93E-02
166GO:0010119: regulation of stomatal movement1.93E-02
167GO:0000266: mitochondrial fission2.04E-02
168GO:0012501: programmed cell death2.04E-02
169GO:0002213: defense response to insect2.04E-02
170GO:0055046: microgametogenesis2.23E-02
171GO:0006829: zinc II ion transport2.23E-02
172GO:0009785: blue light signaling pathway2.23E-02
173GO:0009266: response to temperature stimulus2.43E-02
174GO:0034605: cellular response to heat2.43E-02
175GO:0002237: response to molecule of bacterial origin2.43E-02
176GO:0006887: exocytosis2.52E-02
177GO:0006897: endocytosis2.52E-02
178GO:0042343: indole glucosinolate metabolic process2.64E-02
179GO:0046688: response to copper ion2.64E-02
180GO:0010167: response to nitrate2.64E-02
181GO:0006470: protein dephosphorylation2.84E-02
182GO:0000162: tryptophan biosynthetic process2.85E-02
183GO:0006825: copper ion transport3.29E-02
184GO:0006874: cellular calcium ion homeostasis3.29E-02
185GO:0009695: jasmonic acid biosynthetic process3.29E-02
186GO:0008152: metabolic process3.31E-02
187GO:0006812: cation transport3.43E-02
188GO:0098542: defense response to other organism3.52E-02
189GO:0009269: response to desiccation3.52E-02
190GO:0016998: cell wall macromolecule catabolic process3.52E-02
191GO:0055085: transmembrane transport3.53E-02
192GO:0006486: protein glycosylation3.68E-02
193GO:0016226: iron-sulfur cluster assembly3.75E-02
194GO:0009693: ethylene biosynthetic process3.99E-02
195GO:0009561: megagametogenesis4.24E-02
196GO:0070417: cellular response to cold4.49E-02
197GO:0042631: cellular response to water deprivation4.74E-02
198GO:0000271: polysaccharide biosynthetic process4.74E-02
199GO:0000413: protein peptidyl-prolyl isomerization4.74E-02
200GO:0009620: response to fungus4.76E-02
201GO:0048868: pollen tube development5.00E-02
202GO:0006885: regulation of pH5.00E-02
203GO:0006520: cellular amino acid metabolic process5.00E-02
204GO:0045489: pectin biosynthetic process5.00E-02
RankGO TermAdjusted P value
1GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
2GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
3GO:0005212: structural constituent of eye lens0.00E+00
4GO:0003978: UDP-glucose 4-epimerase activity1.56E-05
5GO:0030552: cAMP binding1.70E-05
6GO:0030553: cGMP binding1.70E-05
7GO:0005216: ion channel activity3.30E-05
8GO:0005249: voltage-gated potassium channel activity9.09E-05
9GO:0030551: cyclic nucleotide binding9.09E-05
10GO:0050373: UDP-arabinose 4-epimerase activity1.64E-04
11GO:0016301: kinase activity1.88E-04
12GO:0003714: transcription corepressor activity3.89E-04
13GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.68E-04
14GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.68E-04
15GO:0090353: polygalacturonase inhibitor activity5.54E-04
16GO:2001227: quercitrin binding5.54E-04
17GO:0019707: protein-cysteine S-acyltransferase activity5.54E-04
18GO:0047940: glucuronokinase activity5.54E-04
19GO:2001147: camalexin binding5.54E-04
20GO:0008792: arginine decarboxylase activity5.54E-04
21GO:0015245: fatty acid transporter activity5.54E-04
22GO:0010285: L,L-diaminopimelate aminotransferase activity5.54E-04
23GO:0043295: glutathione binding6.00E-04
24GO:0047893: flavonol 3-O-glucosyltransferase activity7.46E-04
25GO:0005544: calcium-dependent phospholipid binding7.46E-04
26GO:0004674: protein serine/threonine kinase activity9.11E-04
27GO:0019901: protein kinase binding1.13E-03
28GO:0047364: desulfoglucosinolate sulfotransferase activity1.19E-03
29GO:0015152: glucose-6-phosphate transmembrane transporter activity1.19E-03
30GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity1.19E-03
31GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity1.19E-03
32GO:0015036: disulfide oxidoreductase activity1.19E-03
33GO:0050736: O-malonyltransferase activity1.19E-03
34GO:0004385: guanylate kinase activity1.19E-03
35GO:0048531: beta-1,3-galactosyltransferase activity1.19E-03
36GO:0004568: chitinase activity1.49E-03
37GO:0071917: triose-phosphate transmembrane transporter activity1.96E-03
38GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity1.96E-03
39GO:0004324: ferredoxin-NADP+ reductase activity1.96E-03
40GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.96E-03
41GO:0016531: copper chaperone activity1.96E-03
42GO:0032403: protein complex binding1.96E-03
43GO:0017077: oxidative phosphorylation uncoupler activity2.84E-03
44GO:0035529: NADH pyrophosphatase activity2.84E-03
45GO:0016758: transferase activity, transferring hexosyl groups3.50E-03
46GO:0001046: core promoter sequence-specific DNA binding3.53E-03
47GO:0005509: calcium ion binding3.69E-03
48GO:0047769: arogenate dehydratase activity3.83E-03
49GO:0004834: tryptophan synthase activity3.83E-03
50GO:0004737: pyruvate decarboxylase activity3.83E-03
51GO:0004664: prephenate dehydratase activity3.83E-03
52GO:0003995: acyl-CoA dehydrogenase activity3.83E-03
53GO:0050378: UDP-glucuronate 4-epimerase activity3.83E-03
54GO:0009916: alternative oxidase activity3.83E-03
55GO:0015120: phosphoglycerate transmembrane transporter activity3.83E-03
56GO:0035251: UDP-glucosyltransferase activity4.30E-03
57GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.91E-03
58GO:0002094: polyprenyltransferase activity4.91E-03
59GO:0016773: phosphotransferase activity, alcohol group as acceptor4.91E-03
60GO:0003997: acyl-CoA oxidase activity4.91E-03
61GO:0005496: steroid binding4.91E-03
62GO:0047631: ADP-ribose diphosphatase activity4.91E-03
63GO:0005471: ATP:ADP antiporter activity4.91E-03
64GO:0004364: glutathione transferase activity4.95E-03
65GO:0004499: N,N-dimethylaniline monooxygenase activity5.59E-03
66GO:0008519: ammonium transmembrane transporter activity6.09E-03
67GO:0030976: thiamine pyrophosphate binding6.09E-03
68GO:0000210: NAD+ diphosphatase activity6.09E-03
69GO:0008194: UDP-glycosyltransferase activity7.08E-03
70GO:0008113: peptide-methionine (S)-S-oxide reductase activity7.36E-03
71GO:0003950: NAD+ ADP-ribosyltransferase activity7.36E-03
72GO:0004012: phospholipid-translocating ATPase activity7.36E-03
73GO:0004144: diacylglycerol O-acyltransferase activity7.36E-03
74GO:0005261: cation channel activity7.36E-03
75GO:0004656: procollagen-proline 4-dioxygenase activity7.36E-03
76GO:0016831: carboxy-lyase activity8.71E-03
77GO:0102425: myricetin 3-O-glucosyltransferase activity8.71E-03
78GO:0102360: daphnetin 3-O-glucosyltransferase activity8.71E-03
79GO:0005524: ATP binding9.10E-03
80GO:0004714: transmembrane receptor protein tyrosine kinase activity1.01E-02
81GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity1.01E-02
82GO:0004034: aldose 1-epimerase activity1.01E-02
83GO:0004033: aldo-keto reductase (NADP) activity1.01E-02
84GO:0080043: quercetin 3-O-glucosyltransferase activity1.07E-02
85GO:0080044: quercetin 7-O-glucosyltransferase activity1.07E-02
86GO:0043565: sequence-specific DNA binding1.08E-02
87GO:0008483: transaminase activity1.13E-02
88GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity1.13E-02
89GO:0071949: FAD binding1.33E-02
90GO:0008375: acetylglucosaminyltransferase activity1.42E-02
91GO:0047617: acyl-CoA hydrolase activity1.49E-02
92GO:0004721: phosphoprotein phosphatase activity1.50E-02
93GO:0030247: polysaccharide binding1.50E-02
94GO:0016757: transferase activity, transferring glycosyl groups1.59E-02
95GO:0004497: monooxygenase activity1.61E-02
96GO:0008171: O-methyltransferase activity1.67E-02
97GO:0005545: 1-phosphatidylinositol binding1.67E-02
98GO:0015020: glucuronosyltransferase activity1.67E-02
99GO:0004864: protein phosphatase inhibitor activity1.67E-02
100GO:0015238: drug transmembrane transporter activity1.75E-02
101GO:0005516: calmodulin binding1.77E-02
102GO:0030170: pyridoxal phosphate binding1.83E-02
103GO:0008559: xenobiotic-transporting ATPase activity1.85E-02
104GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.20E-02
105GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.23E-02
106GO:0005315: inorganic phosphate transmembrane transporter activity2.23E-02
107GO:0042803: protein homodimerization activity2.25E-02
108GO:0015297: antiporter activity2.27E-02
109GO:0004842: ubiquitin-protein transferase activity2.37E-02
110GO:0004722: protein serine/threonine phosphatase activity2.41E-02
111GO:0050661: NADP binding2.41E-02
112GO:0008266: poly(U) RNA binding2.43E-02
113GO:0004190: aspartic-type endopeptidase activity2.64E-02
114GO:0008146: sulfotransferase activity2.64E-02
115GO:0004970: ionotropic glutamate receptor activity2.64E-02
116GO:0005217: intracellular ligand-gated ion channel activity2.64E-02
117GO:0051536: iron-sulfur cluster binding3.07E-02
118GO:0003954: NADH dehydrogenase activity3.07E-02
119GO:0008324: cation transmembrane transporter activity3.29E-02
120GO:0051287: NAD binding3.30E-02
121GO:0019706: protein-cysteine S-palmitoyltransferase activity3.52E-02
122GO:0003824: catalytic activity3.67E-02
123GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.75E-02
124GO:0005507: copper ion binding4.26E-02
125GO:0043531: ADP binding4.63E-02
126GO:0005451: monovalent cation:proton antiporter activity4.74E-02
127GO:0050660: flavin adenine dinucleotide binding4.94E-02
128GO:0005199: structural constituent of cell wall5.00E-02
129GO:0046873: metal ion transmembrane transporter activity5.00E-02
130GO:0030276: clathrin binding5.00E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0016021: integral component of membrane4.23E-08
3GO:0005886: plasma membrane1.29E-07
4GO:0005794: Golgi apparatus1.23E-04
5GO:0000813: ESCRT I complex2.50E-04
6GO:0005802: trans-Golgi network2.82E-04
7GO:0000138: Golgi trans cisterna5.54E-04
8GO:0031304: intrinsic component of mitochondrial inner membrane1.19E-03
9GO:0005901: caveola1.19E-03
10GO:0031314: extrinsic component of mitochondrial inner membrane1.19E-03
11GO:0032580: Golgi cisterna membrane1.58E-03
12GO:0008287: protein serine/threonine phosphatase complex1.96E-03
13GO:0009530: primary cell wall1.96E-03
14GO:0005743: mitochondrial inner membrane2.25E-03
15GO:0070062: extracellular exosome2.84E-03
16GO:0005768: endosome3.48E-03
17GO:0005777: peroxisome3.54E-03
18GO:0000164: protein phosphatase type 1 complex4.91E-03
19GO:0016363: nuclear matrix7.36E-03
20GO:0005887: integral component of plasma membrane1.50E-02
21GO:0005740: mitochondrial envelope1.67E-02
22GO:0005578: proteinaceous extracellular matrix2.23E-02
23GO:0031012: extracellular matrix2.23E-02
24GO:0005769: early endosome2.85E-02
25GO:0005758: mitochondrial intermembrane space3.07E-02
26GO:0070469: respiratory chain3.29E-02
27GO:0043231: intracellular membrane-bounded organelle3.31E-02
28GO:0005741: mitochondrial outer membrane3.52E-02
29GO:0005905: clathrin-coated pit3.52E-02
30GO:0030136: clathrin-coated vesicle4.49E-02
31GO:0009506: plasmodesma4.82E-02
32GO:0031225: anchored component of membrane4.94E-02
33GO:0005770: late endosome5.00E-02
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Gene type



Gene DE type